mRNA_L-elsbetiae_contig17327.4844.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17327.4844.1
Unique NamemRNA_L-elsbetiae_contig17327.4844.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17327.4844.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17327contigL-elsbetiae_contig17327:1178..2310 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-06_002770.1
Exons2
Model size443
Cds size441
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815721.8915095-CDS-L-elsbetiae_contig17327:1178..12531622815721.8915095-CDS-L-elsbetiae_contig17327:1178..1253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17327 1179..1253 -
1691683059.7531643-CDS-L-elsbetiae_contig17327:1178..12531691683059.7531643-CDS-L-elsbetiae_contig17327:1178..1253Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17327 1179..1253 -
1622815721.9034255-CDS-L-elsbetiae_contig17327:1944..23101622815721.9034255-CDS-L-elsbetiae_contig17327:1944..2310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17327 1945..2310 -
1691683059.764602-CDS-L-elsbetiae_contig17327:1944..23101691683059.764602-CDS-L-elsbetiae_contig17327:1944..2310Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17327 1945..2310 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17327.4844.1prot_L-elsbetiae_contig17327.4844.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17327 1179..2310 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17327.4844.1

>prot_L-elsbetiae_contig17327.4844.1 ID=prot_L-elsbetiae_contig17327.4844.1|Name=mRNA_L-elsbetiae_contig17327.4844.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=147bp
WGEGYRVEGEDSQVGYGCISGGGAQAREDGQNRFGCGAGTGDDDWADASW
RPIAREEGYAVSVEEAANAEAGARDGFCYPPRRNDDVIGRQEQFSTVPAE
DVISDEASGFAERLDASKDKGEDDAAIQATLARQCINTPGFYDRMVE
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mRNA from alignment at L-elsbetiae_contig17327:1178..2310-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17327.4844.1 ID=mRNA_L-elsbetiae_contig17327.4844.1|Name=mRNA_L-elsbetiae_contig17327.4844.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1133bp|location=Sequence derived from alignment at L-elsbetiae_contig17327:1178..2310- (Laminarionema elsbetiae ELsaHSoW15)
TGGGGAGAGGGCTACAGGGTCGAAGGAGAAGATAGCCAGGTTGGATATGG
GTGCATCAGTGGTGGAGGGGCACAGGCACGGGAAGATGGCCAGAATCGCT
TCGGCTGTGGTGCGGGAACTGGAGATGACGACTGGGCCGATGCCTCGTGG
CGCCCCATCGCTCGCGAGGAGGGCTATGCCGTTTCAGTAGAAGAAGCAGC
CAATGCAGAAGCAGGAGCACGTGATGGGTTTTGTTACCCGCCACGTCGGA
ACGACGATGTCATTGGGCGCCAGGAGCAGTTTTCGACTGTTCCTGCGGAA
GACGTTATCAGTGACGAAGCTTCGGGGTTTGCGGAGAGGCTCGATGCATC
GAAGGACAAAGGAGAGGTGAGTGCCGCCGAAACAAGTCGACCAGTTTTTG
TTTTAAAAAGAAGGTCGGGTTGTCGCTTGTTTTTTTCTAGCTTCATTCCT
CTCTGTCCGATGTAAGCTACAGCACCCTGATCGTGAATAATGTGCCATTT
GACAAACACATGCACGCTTTCTTAAACGCGTTGGCCGCCCGGGAATGCAC
GATCAGTATGCGAAACACAGGATTTCAGGGGGGTCGACAGACAGTATCGT
TTGGCTGGAACTTATGTCTACTGACTGCTACTCCGCGCGTCTACCGGTAT
TTTCCCCCTGCGCTGTGAAACCCCAGAAACGATAACGGGGGAAAGTTCCA
CCCGAATAACGCCGGAAGTAAATATATATCGGCCGAGATAGGAGCAGGAG
CACACCTGTCTCGTGGGTGTTTGAGCTAAAATGAACGAATGCGCCCCTGA
TTCCATCCAAGTTGCGACGGACGGACTCTTTCCTGTTCGAGTCACGTACA
TGGTCGATCGAAAGATGGAGGCGCAGGCGTCTGTCTCCCCGAGCTCCATC
CAGACTGAGATAGATGATGAGGACAGGAGTCGACAACCGAGCGGATACTG
CCAGAAAATGGGCAACCCCGACTGAGATAACCTAACCGGACCGACGAGTT
GATACTAACCATAGTGCCCCCACTCACCCCTCCATGACTCTCGGTGTTAT
CCCCAAGGACGACGCCGCTATCCAAGCCACGCTTGCTCGCCAATGCATAA
ACACTCCCGGCTTCTACGATCGCATGGTGGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17327:1178..2310-

>mRNA_L-elsbetiae_contig17327.4844.1 ID=mRNA_L-elsbetiae_contig17327.4844.1|Name=mRNA_L-elsbetiae_contig17327.4844.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=882bp|location=Sequence derived from alignment at L-elsbetiae_contig17327:1178..2310- (Laminarionema elsbetiae ELsaHSoW15)
TGGGGAGAGGGCTACAGGGTCGAAGGAGAAGATAGCCAGGTTGGATATGG
GTGCATCAGTGGTGGAGGGGCACAGGCACGGGAAGATGGCCAGAATCGCT
TCGGCTGTGGTGCGGGAACTGGAGATGACGACTGGGCCGATGCCTCGTGG
CGCCCCATCGCTCGCGAGGAGGGCTATGCCGTTTCAGTAGAAGAAGCAGC
CAATGCAGAAGCAGGAGCACGTGATGGGTTTTGTTACCCGCCACGTCGGA
ACGACGATGTCATTGGGCGCCAGGAGCAGTTTTCGACTGTTCCTGCGGAA
GACGTTATCAGTGACGAAGCTTCGGGGTTTGCGGAGAGGCTCGATGCATC
GAAGGACAAAGGAGAGTGGGGAGAGGGCTACAGGGTCGAAGGAGAAGATA
GCCAGGTTGGATATGGGTGCATCAGTGGTGGAGGGGCACAGGCACGGGAA
GATGGCCAGAATCGCTTCGGCTGTGGTGCGGGAACTGGAGATGACGACTG
GGCCGATGCCTCGTGGCGCCCCATCGCTCGCGAGGAGGGCTATGCCGTTT
CAGTAGAAGAAGCAGCCAATGCAGAAGCAGGAGCACGTGATGGGTTTTGT
TACCCGCCACGTCGGAACGACGATGTCATTGGGCGCCAGGAGCAGTTTTC
GACTGTTCCTGCGGAAGACGTTATCAGTGACGAAGCTTCGGGGTTTGCGG
AGAGGCTCGATGCATCGAAGGACAAAGGAGAGGACGACGCCGCTATCCAA
GCCACGCTTGCTCGCCAATGCATAAACACTCCCGGCTTCTACGATCGCAT
GGTGGAAGACGACGCCGCTATCCAAGCCACGCTTGCTCGCCAATGCATAA
ACACTCCCGGCTTCTACGATCGCATGGTGGAA
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