mRNA_L-elsbetiae_contig173.4832.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig173.4832.1
Unique NamemRNA_L-elsbetiae_contig173.4832.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig173.4832.1 vs. uniprot
Match: D7FTI7_ECTSI (Peptidylprolyl isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI7_ECTSI)

HSP 1 Score: 132 bits (332), Expect = 1.710e-38
Identity = 74/111 (66.67%), Postives = 75/111 (67.57%), Query Frame = 1
Query:    1 MARRAVSVEIFAAGDGINYPQK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            MARRAVSVEIFAAGDGINYPQK                                    VVPGLD+GVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN
Sbjct:    1 MARRAVSVEIFAAGDGINYPQKGQTVTVHYTGYLEDGTQFDSSRNRGKPFKFKLGSEQVVPGLDDGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 111          
BLAST of mRNA_L-elsbetiae_contig173.4832.1 vs. uniprot
Match: A0A7S2C1G0_9STRA (Peptidylprolyl isomerase n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2C1G0_9STRA)

HSP 1 Score: 107 bits (268), Expect = 9.590e-29
Identity = 61/111 (54.95%), Postives = 67/111 (60.36%), Query Frame = 1
Query:    1 MARRAVSVEIFAAGDGINYPQK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            M R  V+VEIFAAGDGINYP+K                                    V+ GLD+GVSQLSIGERAK++IPAA AYG RGFPGLVPP S LVFDLELITFN
Sbjct:    1 MPRHDVAVEIFAAGDGINYPRKGQTVTVHYTGYLPDGDTFDSSRDRGKPFKFKLGAEQVILGLDQGVSQLSIGERAKISIPAALAYGERGFPGLVPPDSELVFDLELITFN 111          
BLAST of mRNA_L-elsbetiae_contig173.4832.1 vs. uniprot
Match: A0A6U1QP22_9STRA (Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1QP22_9STRA)

HSP 1 Score: 102 bits (255), Expect = 9.660e-27
Identity = 57/106 (53.77%), Postives = 62/106 (58.49%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYPQ------------------------------------KVVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            V VEIFAAGDGINYPQ                                    +V+ GLDEGVSQLSIGERAK+TIP+   YG RGFPGLVPP+S LVFDLELITF 
Sbjct:    8 VKVEIFAAGDGINYPQPGKTVTVHYTGFLPDGTQFDSSRDRGKPFKFKLGAEQVISGLDEGVSQLSIGERAKITIPSQKGYGERGFPGLVPPNSQLVFDLELITFT 113          
BLAST of mRNA_L-elsbetiae_contig173.4832.1 vs. uniprot
Match: F0YHE6_AURAN (Peptidylprolyl isomerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHE6_AURAN)

HSP 1 Score: 101 bits (252), Expect = 2.690e-26
Identity = 54/109 (49.54%), Postives = 65/109 (59.63%), Query Frame = 1
Query:    7 RRAVSVEIFAAGDGINYPQK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            ++ ++VEIFAAGDG+NYP+K                                    V+PGLD GVSQLSIGERAK+ IP   AYG RGFPGL+P +SAL+FDLELITFN
Sbjct:    4 KKDIAVEIFAAGDGVNYPRKGQTVTVHYSGYLPSGDMFDSSRDRGKPFKFKLGGEQVIPGLDAGVSQLSIGERAKIVIPPDMAYGDRGFPGLIPRNSALIFDLELITFN 112          
BLAST of mRNA_L-elsbetiae_contig173.4832.1 vs. uniprot
Match: A0A8J2T2V8_9STRA (Peptidylprolyl isomerase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2V8_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.590e-25
Identity = 53/106 (50.00%), Postives = 65/106 (61.32%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYP------------------------------------QKVVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            ++VEIFAAGDG+NYP                                    ++V+PGLD GVSQLSIGERAK++IP+  AYG RGFPGL+P +SALVFDLELITF+
Sbjct:    8 IAVEIFAAGDGVNYPRQGQTVTVHYSGYLPNGEIFDSSRDRGKPFKFKLGGEQVIPGLDAGVSQLSIGERAKISIPSDMAYGERGFPGLIPRNSALVFDLELITFS 113          
BLAST of mRNA_L-elsbetiae_contig173.4832.1 vs. uniprot
Match: A0A836CL56_9STRA (Peptidylprolyl isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL56_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 1.070e-22
Identity = 41/55 (74.55%), Postives = 51/55 (92.73%), Query Frame = 1
Query:   61 QKVVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            ++VVPGLDEG +QLSIGERAK+T+P + AYGA+GFPGLVPP+S LVFD+ELITF+
Sbjct:   54 EQVVPGLDEGAAQLSIGERAKITMPPSMAYGAKGFPGLVPPNSTLVFDMELITFS 108          
BLAST of mRNA_L-elsbetiae_contig173.4832.1 vs. uniprot
Match: A0A485LR83_9STRA (Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A485LR83_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 3.530e-22
Identity = 48/106 (45.28%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYPQK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            V VE+F AGDG+NYP+K                                    V+PGLDEG+ QL + ERAK+ IPA  AYG +GFPGLVPP++ LVFD+ELITF 
Sbjct:   21 VQVEVFVAGDGVNYPKKGQTVVVHYTAYLQDGKKFDSSRDRDKPFKFKLGAEQVIPGLDEGIEQLCMKERAKIYIPADKAYGKKGFPGLVPPNTNLVFDIELITFK 126          
BLAST of mRNA_L-elsbetiae_contig173.4832.1 vs. uniprot
Match: K3WSB6_GLOUD (Peptidylprolyl isomerase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSB6_GLOUD)

HSP 1 Score: 90.9 bits (224), Expect = 6.210e-22
Identity = 48/106 (45.28%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYPQK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            + VE+F AGDGINYP+K                                    V+PGLDEGV +L + ERAK+ IPA  AYG +GFPGLVPP+S L+FDLEL+TF 
Sbjct:   16 IQVEVFIAGDGINYPKKGQTVVVHYTGYLQDGRKFDSSRDREKPFKFKLGAEQVIPGLDEGVERLCMKERAKIFIPADKAYGRKGFPGLVPPNSNLIFDLELLTFR 121          
BLAST of mRNA_L-elsbetiae_contig173.4832.1 vs. uniprot
Match: A0A024TRW9_9STRA (Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID=100860 RepID=A0A024TRW9_9STRA)

HSP 1 Score: 90.5 bits (223), Expect = 1.010e-21
Identity = 47/106 (44.34%), Postives = 59/106 (55.66%), Query Frame = 1
Query:   16 VSVEIFAAGDGINYPQK------------------------------------VVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            + VE+F AGDGINYPQK                                    V+PGLDEG+ +L + ERAK+ IP+  AYG +GFPGLVPP++ LVFD+ELITF 
Sbjct:   21 IQVEVFVAGDGINYPQKGQTVVVHYTAYLQDGKKFDSSRDRDKPFKFKLGAEQVIPGLDEGIERLCMKERAKIYIPSDKAYGKKGFPGLVPPNTNLVFDIELITFK 126          
BLAST of mRNA_L-elsbetiae_contig173.4832.1 vs. uniprot
Match: A0A7S1CR57_9STRA (Peptidylprolyl isomerase n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CR57_9STRA)

HSP 1 Score: 89.7 bits (221), Expect = 1.920e-21
Identity = 48/112 (42.86%), Postives = 63/112 (56.25%), Query Frame = 1
Query:    1 MARRAVSVEIFAAGDGINYP-------------------------------------QKVVPGLDEGVSQLSIGERAKVTIPAASAYGARGFPGLVPPHSALVFDLELITFN 225
            M++  V+VEIF AGDG+NYP                                     ++V+ GLDEGV+QLSIGE A++ IP+  AYGA GFPGLVPP+  L FD+ELI+F+
Sbjct:   13 MSKGRVTVEIFKAGDGVNYPKPGNVVTLHYTGYYGRAQTEFDSTRTRGKPFKFKLGAEQVIEGLDEGVAQLSIGEHAQIHIPSEKAYGAHGFPGLVPPNKDLTFDVELISFS 124          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig173.4832.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTI7_ECTSI1.710e-3866.67Peptidylprolyl isomerase n=1 Tax=Ectocarpus silicu... [more]
A0A7S2C1G0_9STRA9.590e-2954.95Peptidylprolyl isomerase n=1 Tax=Florenciella parv... [more]
A0A6U1QP22_9STRA9.660e-2753.77Peptidylprolyl isomerase n=1 Tax=Fibrocapsa japoni... [more]
F0YHE6_AURAN2.690e-2649.54Peptidylprolyl isomerase n=1 Tax=Aureococcus anoph... [more]
A0A8J2T2V8_9STRA1.590e-2550.00Peptidylprolyl isomerase n=1 Tax=Pelagomonas calce... [more]
A0A836CL56_9STRA1.070e-2274.55Peptidylprolyl isomerase n=1 Tax=Tribonema minus T... [more]
A0A485LR83_9STRA3.530e-2245.28Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID... [more]
K3WSB6_GLOUD6.210e-2245.28Peptidylprolyl isomerase n=1 Tax=Globisporangium u... [more]
A0A024TRW9_9STRA1.010e-2144.34Peptidylprolyl isomerase n=2 Tax=Aphanomyces TaxID... [more]
A0A7S1CR57_9STRA1.920e-2142.86Peptidylprolyl isomerase n=1 Tax=Bicosoecida sp. C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig173contigL-elsbetiae_contig173:40148..42057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue8.3e-29
Seed eggNOG ortholog2880.D7FTI7
KEGG koko:K09568,ko:K15382
KEGG TC9.A.58.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Peptidyl-prolyl cis-trans isomerase
EggNOG OGsCOG0545@1,KOG0544@2759
EC5.2.1.8
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko02000,ko03110
Exons3
Model size228
Cds size228
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig173.4832.1prot_L-elsbetiae_contig173.4832.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig173 40148..42057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.98227-CDS-L-elsbetiae_contig173:40147..402131622815720.98227-CDS-L-elsbetiae_contig173:40147..40213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig173 40148..40213 +
1691683059.2366688-CDS-L-elsbetiae_contig173:40147..402131691683059.2366688-CDS-L-elsbetiae_contig173:40147..40213Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig173 40148..40213 +
1622815721.0010612-CDS-L-elsbetiae_contig173:41462..415191622815721.0010612-CDS-L-elsbetiae_contig173:41462..41519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig173 41463..41519 +
1691683059.2486348-CDS-L-elsbetiae_contig173:41462..415191691683059.2486348-CDS-L-elsbetiae_contig173:41462..41519Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig173 41463..41519 +
1622815721.012018-CDS-L-elsbetiae_contig173:41952..420571622815721.012018-CDS-L-elsbetiae_contig173:41952..42057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig173 41953..42057 +
1691683059.2644057-CDS-L-elsbetiae_contig173:41952..420571691683059.2644057-CDS-L-elsbetiae_contig173:41952..42057Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig173 41953..42057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig173.4832.1

>prot_L-elsbetiae_contig173.4832.1 ID=prot_L-elsbetiae_contig173.4832.1|Name=mRNA_L-elsbetiae_contig173.4832.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=76bp
MARRAVSVEIFAAGDGINYPQKVVPGLDEGVSQLSIGERAKVTIPAASAY
GARGFPGLVPPHSALVFDLELITFN*
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mRNA from alignment at L-elsbetiae_contig173:40148..42057+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig173.4832.1 ID=mRNA_L-elsbetiae_contig173.4832.1|Name=mRNA_L-elsbetiae_contig173.4832.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1910bp|location=Sequence derived from alignment at L-elsbetiae_contig173:40148..42057+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAAGGCGTGCGGTTTCTGTGGAGATCTTTGCGGCTGGAGACGGCAT AAACTACCCACAGAAGGTCGAGGAAGACGCGAAAAAAGTCTATCTGTTAG ATAATGATCACGCTAGGTTGCGACTTCCGTTGTACGCACCACGCTGTCCT AATCTATGGGGTACTGCACAGTCCGACATAATTTGCTATAGACGAGCGCC TCTATCATGTATGACAACAGGCATCATCAGTCCGTTAGATATATCTATAT CTAGACACATGTGGGGTGTGACGGAAAATAAGGGTATCTAGACTTACTTG TAGATACACCAAGACCACCTGCACGCTTGTGCTGTTGTCCCTCACACACT TGGTGGATATAGTCGGCGCCAAATGTCTCTCAACACCACTGCATTGTAGT CACGTGCTAGGATATGCATATATAGTGCATTTGCAACATTATTCCGTCCT ATCACACTGACTGCTGCGTGTGCAACTTCCAGGCTTCTCGAAAGTACGTG TGCATAAATATCTTGCCGTGTGGTCTTCATCCCATCTGTTTAGCATCTGG CGCCATCTCTTCGGCGCACGACATTTCCGTGTCTGTGTGTGGTGCTTCGC TCTTCGGTGTATTTTAAATCACAGTTAGTGCGTAGCTACATGTGTCGGGG GGTCACATATGTAGGAGATCTCGATATTTCCTGCCTGACATTCGTCGTAC ATACTTCAGCCGGGTCATATCGCTACCAACACAAACCTTCCAGGGACAAA CGGTGACCGTGCACTACACTGGATACCTTGAGGACGGGACTCAGTTCGAC TCGTCCCGAAATCGGGGCAAACCTTTCAAGTTCAAGTTAGGAAGCGAGCA GGCGAGGGACATGACGCTCGCAAAACCAACTGAGCCACTACTGTGTCACG TTCGATCGTGTTCGAGAGTTTTTTTATTTCGGCCATACATATGTGTGACC CCGGTTGGGTCGTCTAGCTAGAGTAGAAGTGGAGGATGGGGGCCAGAGGG GCAGACGACAAAATCCAATAATGGGCAGACAAAAAAAAAGAAAAAAAGAA AATGTACATCCAAATGCTGTCGCTCACCGATTTGTGCGCAACAACTCGCA CCTGCAAAAACAAACTGTCAACGCGGCAAACCCCAGCCAGGAGCTATCAT ATCTGTAGCCCAAGCGTGCAAAATAAAAACGACTTTTGAATGACATCTGG AGAAAAGATTGCACACCACACGCCTGCCATGAATTGATCGATGCCAGTAA GGATCAAGCGATCAGAGCATAACGTGCTGTTCCTATTCTCTGCCTGGTGC TGTCGGCTCCTGCAGGTAGTTCCAGGACTCGACGAGGGTGTGAGCCAGCT CAGCATTGGAGAACGAGCCAAGGTAAAAACTTCTACTTAAAAAGAAGTAC AGACCTAGACTATTGTTGTAAATTGGATGGTCCGAGACCTTTAAACGTGC AATACGAAAAACAGATGCAAATAGCGATTGAGCCACAGGTGAACAGAGTT GGCACGATCAAAACTTTGATCAGGCCACAAAGGTCACAAACAAAACAAAT GTTTAGCTCTGCGAGTGAACGTACAAACAGACGTGGGAAGCTTTCGCACA TCTCAGGAACGCGTTCATGGAGAAACGAAAACAAAGCAAATCGCGAACTT GTTAGTTTTTCGTCCGAGCGAGACCCGCGAGTTTATTGTACGTGTCAAAT CAGTAAGCGATGTGGAGGTCCATGACAAGTAATTGACTTGTTTCTGAACG TATTGCCACCTTTTTCATTGCGCTAATTACTTCACGTTTTTACGCGTACT CTCAGGTCACAATTCCCGCGGCTTCGGCATATGGTGCACGAGGATTCCCT GGCCTTGTTCCTCCACACTCGGCCCTGGTGTTTGATTTAGAGTTGATAAC TTTCAACTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig173:40148..42057+

>mRNA_L-elsbetiae_contig173.4832.1 ID=mRNA_L-elsbetiae_contig173.4832.1|Name=mRNA_L-elsbetiae_contig173.4832.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=456bp|location=Sequence derived from alignment at L-elsbetiae_contig173:40148..42057+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAAGGCGTGCGGTTTCTGTGGAGATCTTTGCGGCTGGAGACGGCAT
AAACTACCCACAGAAGATGGCAAGGCGTGCGGTTTCTGTGGAGATCTTTG
CGGCTGGAGACGGCATAAACTACCCACAGAAGGTAGTTCCAGGACTCGAC
GAGGGTGTGAGCCAGCTCAGCATTGGAGAACGAGCCAAGGTAGTTCCAGG
ACTCGACGAGGGTGTGAGCCAGCTCAGCATTGGAGAACGAGCCAAGGTCA
CAATTCCCGCGGCTTCGGCATATGGTGCACGAGGATTCCCTGGCCTTGTT
CCTCCACACTCGGCCCTGGTGTTTGATTTAGAGTTGATAACTTTCAACTG
AGTCACAATTCCCGCGGCTTCGGCATATGGTGCACGAGGATTCCCTGGCC
TTGTTCCTCCACACTCGGCCCTGGTGTTTGATTTAGAGTTGATAACTTTC
AACTGA
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