mRNA_L-elsbetiae_contig17282.4823.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17282.4823.1
Unique NamemRNA_L-elsbetiae_contig17282.4823.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17282.4823.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17282contigL-elsbetiae_contig17282:35..1538 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1504
Cds size1134
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17282.4823.1prot_L-elsbetiae_contig17282.4823.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17282 297..1430 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.2142658-UTR-L-elsbetiae_contig17282:34..2961622815720.2142658-UTR-L-elsbetiae_contig17282:34..296Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17282 35..296 +
1691683058.7343342-UTR-L-elsbetiae_contig17282:34..2961691683058.7343342-UTR-L-elsbetiae_contig17282:34..296Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17282 35..296 +
1622815720.2383306-UTR-L-elsbetiae_contig17282:1430..15381622815720.2383306-UTR-L-elsbetiae_contig17282:1430..1538Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17282 1431..1538 +
1691683058.7592263-UTR-L-elsbetiae_contig17282:1430..15381691683058.7592263-UTR-L-elsbetiae_contig17282:1430..1538Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17282 1431..1538 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.2249577-CDS-L-elsbetiae_contig17282:296..14301622815720.2249577-CDS-L-elsbetiae_contig17282:296..1430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17282 297..1430 +
1691683058.7440443-CDS-L-elsbetiae_contig17282:296..14301691683058.7440443-CDS-L-elsbetiae_contig17282:296..1430Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17282 297..1430 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17282.4823.1

>prot_L-elsbetiae_contig17282.4823.1 ID=prot_L-elsbetiae_contig17282.4823.1|Name=mRNA_L-elsbetiae_contig17282.4823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=378bp
MQLRRVHQAAGLRCCRYQNGHKKDGMVNVKAKRCNYAGCTKHPVYGVAGD
KNAELCCKHNKYGMVNVKSKKCNYTGCTKQPSYGAAGSRSAELCSGHKKD
GMVDLQRKRCNYAGCTKQPVYGVAGIKTVEFCFEHNDGMVNFKGCTKQPV
YGVAGIKNAELCSGHEKDGMVNVKSKTCNYTGCTKQPVYGVSGSKTGEFC
FERKKDGMMNSKNKSCTHLGCATHPDYGLAGTSKREVCSKHAVKGIINLE
DPKSRISGDDVGDGGRGGSDSAVGDDDTVRRAGAGQKRSNPFPSPVNTEH
SSGGSREGIKRPRQVPAMVPAASTTPVEPPGGDESANPAEHGLFSEPDNA
AVKMEMGLFEGRPRGSFESRRNRRSDL*
back to top

mRNA from alignment at L-elsbetiae_contig17282:35..1538+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17282.4823.1 ID=mRNA_L-elsbetiae_contig17282.4823.1|Name=mRNA_L-elsbetiae_contig17282.4823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1504bp|location=Sequence derived from alignment at L-elsbetiae_contig17282:35..1538+ (Laminarionema elsbetiae ELsaHSoW15)
AGAAGGACGGGATGGTGAATGTCAAGGCCAAGAGGTGCAACTACGCCGGG
TGCACCAAGCAGCCGGGGTACGGTGTTGCCGGTATCAAAACGGCGGGGTT
TTGCTTTGAGCACAAGAAGGACGGGATGGTGAATGTCAAGAGCAAGAAAT
GCAACTACGCCGGGTGCACCAAGCAGCCTAGCTATGGTGCTGCCGGTAGC
AGGAGCACGGAGCTCTGCTCTGGACACCAAAAGGACGGGATGGTGGATCT
GAAGAGAAAGAGATGCAACTACGCCGGGTGCACCAAGCAGCCGGTCTACG
GTGCTGCCGGTATCAAAACGGCCACAAGAAGGACGGGATGGTGAATGTCA
AGGCCAAGAGGTGCAACTACGCTGGGTGCACCAAACACCCAGTCTACGGT
GTCGCAGGGGACAAGAACGCGGAGCTCTGCTGTAAACACAACAAGTACGG
AATGGTGAATGTCAAGAGCAAGAAATGCAACTACACCGGGTGCACCAAAC
AGCCGAGCTATGGTGCTGCCGGTAGCAGGAGCGCGGAGCTCTGCTCTGGA
CACAAGAAGGACGGGATGGTGGATCTCCAGAGGAAGAGGTGCAACTACGC
CGGGTGCACCAAGCAGCCGGTCTATGGTGTTGCCGGTATCAAAACGGTGG
AATTTTGCTTTGAGCACAACGACGGGATGGTGAATTTCAAGGGGTGCACC
AAGCAGCCGGTCTACGGTGTTGCAGGGATCAAGAACGCGGAGCTCTGCTC
TGGACACGAGAAGGACGGGATGGTGAATGTCAAGAGTAAGACGTGCAACT
ACACCGGGTGCACCAAGCAGCCGGTCTATGGTGTTTCTGGTAGCAAAACG
GGGGAGTTTTGCTTTGAGCGCAAGAAGGACGGGATGATGAATAGCAAGAA
CAAGAGTTGCACCCACCTTGGCTGCGCCACACACCCAGACTACGGTCTTG
CTGGCACCAGCAAGAGGGAGGTATGCTCCAAGCATGCCGTAAAAGGCATC
ATCAACCTCGAGGATCCCAAAAGCCGGATCAGCGGTGATGATGTTGGCGA
CGGCGGGCGAGGCGGTAGCGATTCAGCAGTGGGTGATGATGACACCGTTC
GCCGTGCTGGTGCCGGTCAAAAGCGGAGCAACCCGTTCCCGTCACCCGTC
AACACAGAACATTCCTCGGGCGGCAGCAGGGAGGGCATCAAGCGACCTCG
TCAGGTCCCTGCCATGGTGCCTGCTGCATCGACAACCCCCGTGGAACCAC
CAGGAGGAGATGAGAGCGCCAACCCAGCGGAGCATGGCTTGTTTTCGGAA
CCAGACAACGCTGCCGTGAAGATGGAAATGGGACTCTTCGAAGGTAGACC
CCGCGGGAGCTTCGAGAGTCGAAGAAACCGAAGAAGCGACCTGTGATGAA
GGCGCGACCCCCGCCGTGGAAGTTGGCCCTGTGTCCGGAGTTAGATGCCT
CGGTGAGGACAAACATGAGGGATTCTTCCCCATAAAAAAACATGATGGAT
GGAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17282:35..1538+

>mRNA_L-elsbetiae_contig17282.4823.1 ID=mRNA_L-elsbetiae_contig17282.4823.1|Name=mRNA_L-elsbetiae_contig17282.4823.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2268bp|location=Sequence derived from alignment at L-elsbetiae_contig17282:35..1538+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAACTACGCCGGGTGCACCAAGCAGCCGGTCTACGGTGCTGCCGGTA
TCAAAACGGCCACAAGAAGGACGGGATGGTGAATGTCAAGGCCAAGAGGT
GCAACTACGCTGGGTGCACCAAACACCCAGTCTACGGTGTCGCAGGGGAC
AAGAACGCGGAGCTCTGCTGTAAACACAACAAGTACGGAATGGTGAATGT
CAAGAGCAAGAAATGCAACTACACCGGGTGCACCAAACAGCCGAGCTATG
GTGCTGCCGGTAGCAGGAGCGCGGAGCTCTGCTCTGGACACAAGAAGGAC
GGGATGGTGGATCTCCAGAGGAAGAGGTGCAACTACGCCGGGTGCACCAA
GCAGCCGGTCTATGGTGTTGCCGGTATCAAAACGGTGGAATTTTGCTTTG
AGCACAACGACGGGATGGTGAATTTCAAGGGGTGCACCAAGCAGCCGGTC
TACGGTGTTGCAGGGATCAAGAACGCGGAGCTCTGCTCTGGACACGAGAA
GGACGGGATGGTGAATGTCAAGAGTAAGACGTGCAACTACACCGGGTGCA
CCAAGCAGCCGGTCTATGGTGTTTCTGGTAGCAAAACGGGGGAGTTTTGC
TTTGAGCGCAAGAAGGACGGGATGATGAATAGCAAGAACAAGAGTTGCAC
CCACCTTGGCTGCGCCACACACCCAGACTACGGTCTTGCTGGCACCAGCA
AGAGGGAGGTATGCTCCAAGCATGCCGTAAAAGGCATCATCAACCTCGAG
GATCCCAAAAGCCGGATCAGCGGTGATGATGTTGGCGACGGCGGGCGAGG
CGGTAGCGATTCAGCAGTGGGTGATGATGACACCGTTCGCCGTGCTGGTG
CCGGTCAAAAGCGGAGCAACCCGTTCCCGTCACCCGTCAACACAGAACAT
TCCTCGGGCGGCAGCAGGGAGGGCATCAAGCGACCTCGTCAGGTCCCTGC
CATGGTGCCTGCTGCATCGACAACCCCCGTGGAACCACCAGGAGGAGATG
AGAGCGCCAACCCAGCGGAGCATGGCTTGTTTTCGGAACCAGACAACGCT
GCCGTGAAGATGGAAATGGGACTCTTCGAAGGTAGACCCCGCGGGAGCTT
CGAGAGTCGAAGAAACCGAAGAAGCGACCTGTGAATGCAACTACGCCGGG
TGCACCAAGCAGCCGGTCTACGGTGCTGCCGGTATCAAAACGGCCACAAG
AAGGACGGGATGGTGAATGTCAAGGCCAAGAGGTGCAACTACGCTGGGTG
CACCAAACACCCAGTCTACGGTGTCGCAGGGGACAAGAACGCGGAGCTCT
GCTGTAAACACAACAAGTACGGAATGGTGAATGTCAAGAGCAAGAAATGC
AACTACACCGGGTGCACCAAACAGCCGAGCTATGGTGCTGCCGGTAGCAG
GAGCGCGGAGCTCTGCTCTGGACACAAGAAGGACGGGATGGTGGATCTCC
AGAGGAAGAGGTGCAACTACGCCGGGTGCACCAAGCAGCCGGTCTATGGT
GTTGCCGGTATCAAAACGGTGGAATTTTGCTTTGAGCACAACGACGGGAT
GGTGAATTTCAAGGGGTGCACCAAGCAGCCGGTCTACGGTGTTGCAGGGA
TCAAGAACGCGGAGCTCTGCTCTGGACACGAGAAGGACGGGATGGTGAAT
GTCAAGAGTAAGACGTGCAACTACACCGGGTGCACCAAGCAGCCGGTCTA
TGGTGTTTCTGGTAGCAAAACGGGGGAGTTTTGCTTTGAGCGCAAGAAGG
ACGGGATGATGAATAGCAAGAACAAGAGTTGCACCCACCTTGGCTGCGCC
ACACACCCAGACTACGGTCTTGCTGGCACCAGCAAGAGGGAGGTATGCTC
CAAGCATGCCGTAAAAGGCATCATCAACCTCGAGGATCCCAAAAGCCGGA
TCAGCGGTGATGATGTTGGCGACGGCGGGCGAGGCGGTAGCGATTCAGCA
GTGGGTGATGATGACACCGTTCGCCGTGCTGGTGCCGGTCAAAAGCGGAG
CAACCCGTTCCCGTCACCCGTCAACACAGAACATTCCTCGGGCGGCAGCA
GGGAGGGCATCAAGCGACCTCGTCAGGTCCCTGCCATGGTGCCTGCTGCA
TCGACAACCCCCGTGGAACCACCAGGAGGAGATGAGAGCGCCAACCCAGC
GGAGCATGGCTTGTTTTCGGAACCAGACAACGCTGCCGTGAAGATGGAAA
TGGGACTCTTCGAAGGTAGACCCCGCGGGAGCTTCGAGAGTCGAAGAAAC
CGAAGAAGCGACCTGTGA
back to top