mRNA_L-elsbetiae_contig17281.4822.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17281.4822.1
Unique NamemRNA_L-elsbetiae_contig17281.4822.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17281.4822.1 vs. uniprot
Match: A0A6H5K2A1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2A1_9PHAE)

HSP 1 Score: 354 bits (908), Expect = 3.980e-119
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 2 
Query:    2 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 544
            KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct:   49 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 229
[Close]
BLAST of mRNA_L-elsbetiae_contig17281.4822.1 vs. uniprot
Match: A0A7S1UDB6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UDB6_9STRA)

HSP 1 Score: 349 bits (896), Expect = 1.610e-117
Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 2 
Query:    2 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 544
            KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTID VKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTID VKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct:   32 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 212
[Close]
BLAST of mRNA_L-elsbetiae_contig17281.4822.1 vs. uniprot
Match: D8LC68_ECTSI (Uncharacterized protein n=3 Tax=Eukaryota TaxID=2759 RepID=D8LC68_ECTSI)

HSP 1 Score: 354 bits (908), Expect = 6.770e-117
Identity = 181/181 (100.00%), Postives = 181/181 (100.00%), Query Frame = 2 
Query:    2 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 544
            KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct:  199 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 379
[Close]
BLAST of mRNA_L-elsbetiae_contig17281.4822.1 vs. uniprot
Match: F0YAA4_AURAN (Polyubiquitin n=9 Tax=Stramenopiles TaxID=33634 RepID=F0YAA4_AURAN)

HSP 1 Score: 349 bits (896), Expect = 3.560e-116
Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 2 
Query:    2 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 544
            KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTID VKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTID VKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
[Close]
BLAST of mRNA_L-elsbetiae_contig17281.4822.1 vs. uniprot
Match: UBIQP_PHYIN (Polyubiquitin n=16 Tax=Eukaryota TaxID=2759 RepID=UBIQP_PHYIN)

HSP 1 Score: 346 bits (888), Expect = 4.150e-116
Identity = 177/181 (97.79%), Postives = 179/181 (98.90%), Query Frame = 2 
Query:    2 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 544
            KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSD+ID VKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSD+ID VKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
[Close]
BLAST of mRNA_L-elsbetiae_contig17281.4822.1 vs. uniprot
Match: A0A7S2ESJ4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2ESJ4_9STRA)

HSP 1 Score: 345 bits (884), Expect = 4.740e-116
Identity = 177/181 (97.79%), Postives = 177/181 (97.79%), Query Frame = 2 
Query:    2 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 544
            KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTID VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTID VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct:    6 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 186
[Close]
BLAST of mRNA_L-elsbetiae_contig17281.4822.1 vs. uniprot
Match: A0A836CJQ4_9STRA (Polyubiquitin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJQ4_9STRA)

HSP 1 Score: 349 bits (896), Expect = 9.860e-116
Identity = 179/181 (98.90%), Postives = 179/181 (98.90%), Query Frame = 2 
Query:    2 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 544
            KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTID VKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTID VKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct:   78 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 258
[Close]
BLAST of mRNA_L-elsbetiae_contig17281.4822.1 vs. uniprot
Match: A0A6S8JTU4_9STRA (Hypothetical protein n=7 Tax=Sar TaxID=2698737 RepID=A0A6S8JTU4_9STRA)

HSP 1 Score: 345 bits (884), Expect = 1.680e-115
Identity = 177/181 (97.79%), Postives = 177/181 (97.79%), Query Frame = 2 
Query:    2 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 544
            KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTID VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTID VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
[Close]
BLAST of mRNA_L-elsbetiae_contig17281.4822.1 vs. uniprot
Match: A0A7S1B3W7_9STRA (Hypothetical protein (Fragment) n=3 Tax=Coscinodiscophyceae TaxID=33836 RepID=A0A7S1B3W7_9STRA)

HSP 1 Score: 345 bits (884), Expect = 4.620e-115
Identity = 177/181 (97.79%), Postives = 177/181 (97.79%), Query Frame = 2 
Query:    2 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 544
            KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTID VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTID VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct:   75 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 255
[Close]
BLAST of mRNA_L-elsbetiae_contig17281.4822.1 vs. uniprot
Match: M9NZH2_PARCA (Polyubiquitin (Fragment) n=1 Tax=Paramecium caudatum TaxID=5885 RepID=M9NZH2_PARCA)

HSP 1 Score: 345 bits (884), Expect = 5.700e-115
Identity = 177/181 (97.79%), Postives = 177/181 (97.79%), Query Frame = 2 
Query:    2 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 544
            KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTID VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTID VK KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG
Sbjct:   48 KQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDAVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTIDAVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17281.4822.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K2A1_9PHAE3.980e-119100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S1UDB6_9STRA1.610e-11798.90Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
D8LC68_ECTSI6.770e-117100.00Uncharacterized protein n=3 Tax=Eukaryota TaxID=27... [more]
F0YAA4_AURAN3.560e-11698.90Polyubiquitin n=9 Tax=Stramenopiles TaxID=33634 Re... [more]
UBIQP_PHYIN4.150e-11697.79Polyubiquitin n=16 Tax=Eukaryota TaxID=2759 RepID=... [more]
A0A7S2ESJ4_9STRA4.740e-11697.79Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A836CJQ4_9STRA9.860e-11698.90Polyubiquitin n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A6S8JTU4_9STRA1.680e-11597.79Hypothetical protein n=7 Tax=Sar TaxID=2698737 Rep... [more]
A0A7S1B3W7_9STRA4.620e-11597.79Hypothetical protein (Fragment) n=3 Tax=Coscinodis... [more]
M9NZH2_PARCA5.700e-11597.79Polyubiquitin (Fragment) n=1 Tax=Paramecium caudat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17281contigL-elsbetiae_contig17281:1026..2525 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score301.6
Seed ortholog evalue2.1e-79
Seed eggNOG ortholog2880.D7FWC9
Preferred nameUBC
KEGG koko:K02927,ko:K04551,ko:K08770,ko:K12158
KEGG Pathwayko03010,ko03320,ko04137,ko04144,ko05012,ko05167,map03010,map03320,map04137,map04144,map05012,map05167
KEGG ModuleM00177,M00179
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0019538,GO:0031386,GO:0032446,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044464,GO:0045116,GO:0070647,GO:0071704,GO:1901564
EggNOG free text desc.ubiquitin
EggNOG OGsCOG5272@1,KOG0001@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04121,ko04147
Ec32 ortholog descriptionsimilar to ubiquitin
Ec32 orthologEc-25_000520.1
Exons3
Model size1191
Cds size462
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17281.4822.1prot_L-elsbetiae_contig17281.4822.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17281 1667..2314 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.1308684-UTR-L-elsbetiae_contig17281:1025..16661622815720.1308684-UTR-L-elsbetiae_contig17281:1025..1666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17281 1026..1666 -
1691683058.6784031-UTR-L-elsbetiae_contig17281:1025..16661691683058.6784031-UTR-L-elsbetiae_contig17281:1025..1666Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17281 1026..1666 -
1622815720.1642795-UTR-L-elsbetiae_contig17281:2314..23531622815720.1642795-UTR-L-elsbetiae_contig17281:2314..2353Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17281 2315..2353 -
1691683058.7157679-UTR-L-elsbetiae_contig17281:2314..23531691683058.7157679-UTR-L-elsbetiae_contig17281:2314..2353Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17281 2315..2353 -
1622815720.176917-UTR-L-elsbetiae_contig17281:2476..25251622815720.176917-UTR-L-elsbetiae_contig17281:2476..2525Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17281 2477..2525 -
1691683058.7252371-UTR-L-elsbetiae_contig17281:2476..25251691683058.7252371-UTR-L-elsbetiae_contig17281:2476..2525Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17281 2477..2525 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815720.1426523-CDS-L-elsbetiae_contig17281:1666..19391622815720.1426523-CDS-L-elsbetiae_contig17281:1666..1939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17281 1667..1939 -
1691683058.6925342-CDS-L-elsbetiae_contig17281:1666..19391691683058.6925342-CDS-L-elsbetiae_contig17281:1666..1939Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17281 1667..1939 -
1622815720.152511-CDS-L-elsbetiae_contig17281:2125..23141622815720.152511-CDS-L-elsbetiae_contig17281:2125..2314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17281 2126..2314 -
1691683058.705586-CDS-L-elsbetiae_contig17281:2125..23141691683058.705586-CDS-L-elsbetiae_contig17281:2125..2314Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17281 2126..2314 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17281.4822.1

>prot_L-elsbetiae_contig17281.4822.1 ID=prot_L-elsbetiae_contig17281.4822.1|Name=mRNA_L-elsbetiae_contig17281.4822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=154bp
MQIFVKTLTGKTITLDVEPSDTIDGVKQKIQDKEGIPPDQQRLIFAGKQL
EDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLDVEPSDTID
GVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR
GGF*
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mRNA from alignment at L-elsbetiae_contig17281:1026..2525-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17281.4822.1 ID=mRNA_L-elsbetiae_contig17281.4822.1|Name=mRNA_L-elsbetiae_contig17281.4822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1500bp|location=Sequence derived from alignment at L-elsbetiae_contig17281:1026..2525- (Laminarionema elsbetiae ELsaHSoW15)
CAAGCAGCTGGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGG
CGAGTGGAGTTTGTCTTGAACGTACGCCATGTGGAGACGAGGCATTCTTT
GCCCACGCATGTCACTAACCGGACCCCCCTCTCCTATTTGATGCGTTTGA
TTTATATTTTTTTCTCTTGCAGGAGTCTACCCTCCACCTCGTGCTGAGGC
TGCGCGGCGGCATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATC
ACTCTTGACGTGGAGCCCTCGGACACGATCGACGGCGTGAAGCAGAAGAT
CCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTGATCTTCGCCG
GCAAGCAGCTGGAGGACGGCCGCACGCTGTCCGACTACAACATCCAGAAG
GCGAGTGTAGTTTGTCTTGAACGTACGACATCTGAAGATGAGTCATACAT
AGATTGGAGACGAAAGAGGTACACGAGAGAACTAGCGACTCTTGAAACCA
TGAAAACCAGATACCTGTACTTTTGCATGTCACTAACCGGCCCCCCTCTC
CCTGATGCGCTTGGTTTGTATTTTTTTCTCTTGCAGGAGTCTACCCTCCA
CCTGGTGCTGAGGCTGCGCGGCGGAATGCAGATCTTCGTCAAGACCCTCA
CGGGCAAGACGATCACTCTTGACGTGGAGCCCTCGGACACGATCGACGGC
GTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCG
TCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCCGACT
ACAACATCCAGAAAGAGTCGACGCTCCACCTCGTTCTCCGCCTGCGCGGT
GGCTTTTAAATCGCTCGGCCAGCGTCTTCGATACTGCATTTCCTCTGTTG
CAACTTCAGCAACTGCCACTCTTGGTATTGACATGGCCTAGTTGTAGTGA
TGGGTCGGCAATCGAGAGAAATACCTTGATGGGCCAGATGTTTTCCAAAT
TTTCCAGATGATTTGAGCCAGTGTGTGCCGTCAGCACAACGAAACTAGGA
GAGGAGAGGTAATGGCTAGGCTGGCGAGATTTGGTGTGAATGAGGAGATG
TTGAAATTCATTGAAAGAACTGATGTGGAAGGCTCGCACTCTGGACCGAA
GGGGAAGAACCGCGATTGTACCAGAATGGATATCGGGCGAAAGTTACCTC
AGCGATGGACTCGCAGTCGAAAACTATCAACACTTTTAGAACCCGCCTAT
ACTCTGGCCGCCTGTGATTGGCTGAAGAGCCACGGTCCCTTCCAGTCTGC
TGGCCCCGCGTTCTTCCCGGACTTGCCGGACCTGCCAGCAGAGTGACTGG
GGTGAAACAAGAGGGTGCATCGCTATCCCACAGATGCAGGAGGAACGTAA
GCATGGTTTCACAAGGTTCCGTGCACACAACAGAAGATAAAATCGAAAAC
TAAAAAAATGGCGACAGTTCGGACTCCCGAATCTAAATTAAACTTTCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17281:1026..2525-

>mRNA_L-elsbetiae_contig17281.4822.1 ID=mRNA_L-elsbetiae_contig17281.4822.1|Name=mRNA_L-elsbetiae_contig17281.4822.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig17281:1026..2525- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACGATCACTCTTGACGT
GGAGCCCTCGGACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGG
AGGGCATCCCCCCCGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTG
GAGGACGGCCGCACGCTGTCCGACTACAACATCCAGAAGATGCAGATCTT
CGTCAAGACCCTCACGGGCAAGACGATCACTCTTGACGTGGAGCCCTCGG
ACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCC
CCCGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCG
CACGCTGTCCGACTACAACATCCAGAAGGAGTCTACCCTCCACCTGGTGC
TGAGGCTGCGCGGCGGAATGCAGATCTTCGTCAAGACCCTCACGGGCAAG
ACGATCACTCTTGACGTGGAGCCCTCGGACACGATCGACGGCGTGAAGCA
GAAGATCCAGGACAAGGAGGGCATCCCCCCCGACCAGCAGCGTCTGATCT
TCGCCGGCAAGCAGCTGGAGGACGGCCGCACGCTGTCCGACTACAACATC
CAGAAAGAGTCGACGCTCCACCTCGTTCTCCGCCTGCGCGGTGGCTTTTA
AGAGTCTACCCTCCACCTGGTGCTGAGGCTGCGCGGCGGAATGCAGATCT
TCGTCAAGACCCTCACGGGCAAGACGATCACTCTTGACGTGGAGCCCTCG
GACACGATCGACGGCGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCC
CCCCGACCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCC
GCACGCTGTCCGACTACAACATCCAGAAAGAGTCGACGCTCCACCTCGTT
CTCCGCCTGCGCGGTGGCTTTTAA
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