mRNA_L-elsbetiae_contig17276.4819.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17276.4819.1
Unique NamemRNA_L-elsbetiae_contig17276.4819.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17276.4819.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17276contigL-elsbetiae_contig17276:988..1532 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionHomeodomain-like
Ec32 orthologEc-23_001040.2
Exons1
Model size545
Cds size543
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815719.9607084-CDS-L-elsbetiae_contig17276:987..15301622815719.9607084-CDS-L-elsbetiae_contig17276:987..1530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17276 988..1530 +
1691683058.5836654-CDS-L-elsbetiae_contig17276:987..15301691683058.5836654-CDS-L-elsbetiae_contig17276:987..1530Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17276 988..1530 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17276.4819.1prot_L-elsbetiae_contig17276.4819.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17276 988..1530 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17276.4819.1

>prot_L-elsbetiae_contig17276.4819.1 ID=prot_L-elsbetiae_contig17276.4819.1|Name=mRNA_L-elsbetiae_contig17276.4819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
HTLPYALRLCRCSRSFCLSHQHMHRFIRGENAGFTSVIGAQQPQSTTTLR
ESTYLHADFLPALPACASMDSRRLQELRDVYTQLSQQSTGPDGAQAGTGA
AFGQGDNNSAGLSQGSTPTQPAPARIPAGSSGRSASPSGGAASLPAPNRA
ASFMSDTEHDGGDSAAAGAGIGTGTGGKRKR
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mRNA from alignment at L-elsbetiae_contig17276:988..1532+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17276.4819.1 ID=mRNA_L-elsbetiae_contig17276.4819.1|Name=mRNA_L-elsbetiae_contig17276.4819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=545bp|location=Sequence derived from alignment at L-elsbetiae_contig17276:988..1532+ (Laminarionema elsbetiae ELsaHSoW15)
CATACGTTACCCTACGCGCTGCGGCTCTGCCGCTGCTCTCGCTCTTTCTG
TCTGTCTCATCAGCACATGCATAGGTTCATCAGGGGCGAAAACGCAGGAT
TTACCAGCGTGATCGGTGCGCAGCAGCCGCAGTCGACGACGACTTTGAGG
GAGAGTACATACTTGCACGCTGACTTCTTGCCTGCCCTCCCAGCCTGCGC
CAGTATGGATAGCCGACGGCTCCAGGAGCTACGTGATGTCTACACACAGC
TGTCACAGCAGAGCACAGGACCAGACGGTGCGCAGGCCGGCACTGGTGCC
GCTTTTGGGCAGGGCGACAACAACTCCGCAGGGCTTAGCCAAGGCTCCAC
TCCGACACAACCAGCACCGGCACGAATACCCGCGGGTAGTAGCGGAAGAA
GCGCTTCGCCGAGCGGTGGAGCAGCGAGCCTGCCAGCGCCGAACCGGGCT
GCGTCGTTTATGAGCGACACGGAGCACGATGGAGGGGACTCGGCCGCGGC
GGGGGCGGGGATCGGGACGGGGACAGGCGGCAAGAGGAAACGGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17276:988..1532+

>mRNA_L-elsbetiae_contig17276.4819.1 ID=mRNA_L-elsbetiae_contig17276.4819.1|Name=mRNA_L-elsbetiae_contig17276.4819.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig17276:988..1532+ (Laminarionema elsbetiae ELsaHSoW15)
CATACGTTACCCTACGCGCTGCGGCTCTGCCGCTGCTCTCGCTCTTTCTG
TCTGTCTCATCAGCACATGCATAGGTTCATCAGGGGCGAAAACGCAGGAT
TTACCAGCGTGATCGGTGCGCAGCAGCCGCAGTCGACGACGACTTTGAGG
GAGAGTACATACTTGCACGCTGACTTCTTGCCTGCCCTCCCAGCCTGCGC
CAGTATGGATAGCCGACGGCTCCAGGAGCTACGTGATGTCTACACACAGC
TGTCACAGCAGAGCACAGGACCAGACGGTGCGCAGGCCGGCACTGGTGCC
GCTTTTGGGCAGGGCGACAACAACTCCGCAGGGCTTAGCCAAGGCTCCAC
TCCGACACAACCAGCACCGGCACGAATACCCGCGGGTAGTAGCGGAAGAA
GCGCTTCGCCGAGCGGTGGAGCAGCGAGCCTGCCAGCGCCGAACCGGGCT
GCGTCGTTTATGAGCGACACGGAGCACGATGGAGGGGACTCGGCCGCGGC
GGGGGCGGGGATCGGGACGGGGACAGGCGGCAAGAGGAAACGGCATACGT
TACCCTACGCGCTGCGGCTCTGCCGCTGCTCTCGCTCTTTCTGTCTGTCT
CATCAGCACATGCATAGGTTCATCAGGGGCGAAAACGCAGGATTTACCAG
CGTGATCGGTGCGCAGCAGCCGCAGTCGACGACGACTTTGAGGGAGAGTA
CATACTTGCACGCTGACTTCTTGCCTGCCCTCCCAGCCTGCGCCAGTATG
GATAGCCGACGGCTCCAGGAGCTACGTGATGTCTACACACAGCTGTCACA
GCAGAGCACAGGACCAGACGGTGCGCAGGCCGGCACTGGTGCCGCTTTTG
GGCAGGGCGACAACAACTCCGCAGGGCTTAGCCAAGGCTCCACTCCGACA
CAACCAGCACCGGCACGAATACCCGCGGGTAGTAGCGGAAGAAGCGCTTC
GCCGAGCGGTGGAGCAGCGAGCCTGCCAGCGCCGAACCGGGCTGCGTCGT
TTATGAGCGACACGGAGCACGATGGAGGGGACTCGGCCGCGGCGGGGGCG
GGGATCGGGACGGGGACAGGCGGCAAGAGGAAACGG
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