mRNA_L-elsbetiae_contig17253.4811.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig17253.4811.1 vs. uniprot
Match: D8LIY0_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIY0_ECTSI) HSP 1 Score: 147 bits (371), Expect = 7.850e-35 Identity = 89/179 (49.72%), Postives = 112/179 (62.57%), Query Frame = -3 Query: 1 IYNGSNVTWTGVTEFSSNEALFDGGAIATPLSGVSFSPLDSTLTVRXXXXXXXXXXXXXXXXLALLGGCAADLGSA-DVVFSGNSADVAGGAVFLSSTGFGPTFSGASFVSNSAQVGGAVSTVGSGNTKDDIGVEASNPTTFDSCRFTGNTATATGGAVESAAGLDAYVGSVFEGNRAG 534 I N S +WTGVT F+SN+A FDGGAI +P ++P +STL +AL GGCA + + + F N+A V+GGAVF+SS G G F SFVSNSAQ+GGAV+T GSG +K +E NPTTFD CRF GN ATATGGA+++AAG D +V + FE N AG Sbjct: 675 IRNASTASWTGVTNFTSNQAFFDGGAIVSPQLDSEYNPSESTLNFNGTTTFFNNRCGGNGGGMALYGGCALVIDTEMGISFIENTAAVSGGAVFVSSAGTGLAFPTTSFVSNSAQIGGAVATFGSGGSKGVEDIEPPNPTTFDRCRFVGNRATATGGAIDTAAGYDFFVDTTFEDNAAG 853
BLAST of mRNA_L-elsbetiae_contig17253.4811.1 vs. uniprot
Match: D7G301_ECTSI (Polymorphic Outer membrane protein G/I family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G301_ECTSI) HSP 1 Score: 145 bits (365), Expect = 4.690e-34 Identity = 88/156 (56.41%), Postives = 106/156 (67.95%), Query Frame = -3 Query: 1 DGGAIATPLSGVSFSPLDSTLTVRXXXXXXXXXXXXXXXXLALLGGCAADLGSADVVFSGNSADVAGGAVFLSSTGFGPTFSGASFVSNSAQVGGAVSTVGSGNTKDDIGVEASNPTTFDSCRFTGNTATATGGAVESAAGLDAYVGSVFEGNRAG 468 DGG I + S S S STL + LALLGG A ++G+ +V F GN+A+VAGGAVF+S TGFGP F+GA F+SNSAQVGGAVSTVGSGN K++ + NPTTFD C F N ATATGGA++SAAG DA+V S F+GNRAG Sbjct: 536 DGGVIGS-FSTDSVSNQGSTLVMNGTTAFVNNTCGANGGALALLGGLAVNIGTENVSFIGNAAEVAGGAVFVSGTGFGPIFTGARFISNSAQVGGAVSTVGSGNLKENADISPPNPTTFDHCHFIDNRATATGGAIDSAAGQDAFVNSTFQGNRAG 690
BLAST of mRNA_L-elsbetiae_contig17253.4811.1 vs. uniprot
Match: A0A6H5K3R8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3R8_9PHAE) HSP 1 Score: 127 bits (319), Expect = 3.630e-28 Identity = 89/205 (43.41%), Postives = 114/205 (55.61%), Query Frame = -3 Query: 1 STVSWSAGVALVXXXXXXXXXLFIYNGSNVTWTGVTEFSSNEALFDGGAI----ATPLSGVSFSPLDSTLTVRXXXXXXXXXXXXXXXXLALLGGCAADLGSADVVFSGNSADVAGGAVFLSSTGFGPTFSGASFVSNSAQVGGAVSTVGSGNTKDDIGVEASNPTTFDSCRFTGNTATATGGAVESAAGLDAYVGSVFEGNRAG 603 S V+WSA +F++NGS+V WTG T+FSSN+A DGG + TP F+ L++ L LGG + +G+ + VF GN+A VAGGAVF+SST GPTF S +SN AQVGGA+S +GSG + + + PTTFD CRF N A ATGG V++A G D V SVFE N AG Sbjct: 18 SQVAWSAATEFEDNTALSGRAMFLWNGSHVEWTGDTDFSSNKASADGGVVWSFVLTP-----FTTLNTPL----------------------LGGLSVAIGTENAVFVGNTAAVAGGAVFVSSTAIGPTFVNVSLISNWAQVGGAISLIGSGTSFNPEDYTPA-PTTFDQCRFLSNRAIATGGTVDTATGQDRVVNSVFEDNTAG 194
BLAST of mRNA_L-elsbetiae_contig17253.4811.1 vs. uniprot
Match: D7G2X5_ECTSI (Adhesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2X5_ECTSI) HSP 1 Score: 126 bits (316), Expect = 1.170e-27 Identity = 94/245 (38.37%), Postives = 120/245 (48.98%), Query Frame = -3 Query: 4 RFSGNTARAGGAMTVGFSTVSWSAGVALVXXXXXXXXXLFIY-NGSNVTWTGVTEFSSNEALF---------------------------DGGAIATPLSGVSFSPLDSTLTVRXXXXXXXXXXXXXXXXLALLGGCAADLGSADVVFSGNSADVAGGAVFLSSTGFGPTFSGASFVSNSAQVGGAVSTVGSGNTKDDIGVEASNPTTFDSCRFTGNTATATGGAVESAAGLDAYVGSVFEGNRA 654 R +G+ A G V ST+ WS G+ +Y +GS VTW+G TE +GGA+ +P ++PL+S+L + LAL C+ D+ +ADV F+GNSA AGGAVF+S G GPTFS SF+SN AQVGGA S GSGN + + PT FD CRF N AT +GGAV+SAAG D V SVF+GN A Sbjct: 616 RVTGDAAAGGIICAVFASTIYWSGGLTRFIGGSSSFVGGALYVSGSEVTWSGGTEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGGAMMSPSYDSEYNPLESSLVINGTTTFFNNTCGENGGSLALFDACSLDINTADVSFTGNSAGFAGGAVFVSGAGIGPTFSDVSFISNFAQVGGAASVFGSGNDRGMLSPII--PTKFDRCRFIDNVATTSGGAVDSAAGQDIVVNSVFKGNSA 858
BLAST of mRNA_L-elsbetiae_contig17253.4811.1 vs. uniprot
Match: D7FHG7_ECTSI (LNR domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHG7_ECTSI) HSP 1 Score: 117 bits (294), Expect = 9.250e-25 Identity = 106/268 (39.55%), Postives = 132/268 (49.25%), Query Frame = -3 Query: 4 SGFGGAVNAFTSSRVILSGEITEFQDNRAGNGGGAMAVAYSSEVSCGGPCRFSGNTARAGGAMTVGFSTVSWSAGVALVXXXXXXXXXLF-IYNGSNVTWTGVTEFSSNEALFDGGAIATPLSGVSFSPLDSTLTVRXXXXXXXXXXXXXXXXLALLGGCAADLGSADVVFSGNSADVAGGAVFLSSTGFGPTFSGASFVSNSAQVGGAVSTVGSGNTKDDIGVEASNPTTFDSCRFTGNTATATGGAVESAAGLDAYVGSVFEGNRA 804 SGF A +S L+ T F +N AG GGA+ + SS VSW G + XXXXXXXX + NGS V+ T + + S SP DSTL++ LALLGG + + + + F NSAD+AGGAV++S T GPTFS F SNSAQVGGAVS +GSGN K + PTTF CRFT N ATATGGAV+SA+G D + +VF GN+A Sbjct: 2126 SGFSAIGGAIAASGATLAFHNTSFVNNSAGTNGGALWLTDSS---------------------------VSWGGGTEFISXXXXXXXXXXXLLNGSYVSSTXXXXXXXXXXXXXXXXVGSVASDSVLSPEDSTLSIDGPTAFVNNTSGENGGALALLGGLSISVNTEETNFVDNSADLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSALGSGNVKGGENDQLL-PTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQA 2365
BLAST of mRNA_L-elsbetiae_contig17253.4811.1 vs. uniprot
Match: D8LSC0_ECTSI (Polymorphic Outer membrane protein G/I family n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LSC0_ECTSI) HSP 1 Score: 117 bits (293), Expect = 1.140e-24 Identity = 103/264 (39.02%), Postives = 131/264 (49.62%), Query Frame = -3 Query: 1 GGGAMAVAYSSEVSCGGPCRFSGNTARAGGAMTVGFSTVSWSAGVALVXXXXXXXXX--------------------------LFIYNGSNVTWTGVTEFSSNEALFDGGAIATPLSGVSFSPLDSTLTVRXXXXXXXXXXXXXXXXLALLGGCAADLG-SADVVFSGNSADVAGGAVFLSSTGFGPTFSGASFVSNSAQVGGAVSTVGSGNTKDDIGVEASNPTTFDSCRFTGNTATATGGAVESAAGLDAYVGSVFEGNRAG 711 GGG V S+ V GG +F GN A G A+++ S SW XXXXXXXXX +F+ NGS FDGGAI +P + +S + + + LLG C + +A V F+ N+A VAGGAVF+S G GP F+ +F SNSAQVGGAV+ GSGN+K +E NPTTF+ C F GN ATATGGA++SAAG D +V + FE N AG Sbjct: 781 GGGMRLVVGSNAVWGGGTTQFIGNDAAYGSAISMDTSVGSWGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAIFLRNGSTAXXXXXXXXXXXXXFFDGGAIVSPEFDDELNLENSAILINGTTSFFNNACGGNGGAVTLLGACDLVVNPAASVRFTENAAAVAGGAVFVSGAGAGPAFANTTFTSNSAQVGGAVAVFGSGNSKGVADIEPPNPTTFERCWFVGNRATATGGAIDSAAGHDYFVDTTFEDNAAG 1044
BLAST of mRNA_L-elsbetiae_contig17253.4811.1 vs. uniprot
Match: D7G2Z8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2Z8_ECTSI) HSP 1 Score: 116 bits (290), Expect = 2.410e-24 Identity = 90/156 (57.69%), Postives = 111/156 (71.15%), Query Frame = -3 Query: 1 DGGAIATPLSGVSFSPLDSTLTVRXXXXXXXXXXXXXXXXLALLGGCAADLGSADVVFSGNSADVAGGAVFLSSTGFGPTFSGASFVSNSAQVGGAVSTVGSGNTKDDIGVEASNPTTFDSCRFTGNTATATGGAVESAAGLDAYVGSVFEGNRAG 468 DGG + + + ++P S L V XXXXXXXXXXXXXXX LALLGG + +G+ + VF GN+A VAGGA+F+S T GPTF S VSNSAQVGGA+S +GSG + + + PTTF+ CRFT N A ATGGAV++AAG D +V SVFEGN AG Sbjct: 256 DGGVVGSFVLDSLYNPQGSYLIVXXXXXXXXXXXXXXXXALALLGGLSVTIGTENTVFVGNTAAVAGGAIFVSGTAVGPTFVNISLVSNSAQVGGAISLIGSGTSFNPEDYTPA-PTTFEQCRFTSNRAIATGGAVDTAAGQDKFVNSVFEGNTAG 410
BLAST of mRNA_L-elsbetiae_contig17253.4811.1 vs. uniprot
Match: D7FHH1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHH1_ECTSI) HSP 1 Score: 114 bits (286), Expect = 7.910e-24 Identity = 93/209 (44.50%), Postives = 118/209 (56.46%), Query Frame = -3 Query: 4 GGAMTVGFSTVSWSAGVALVXXXXXXXXXLFIY-NGSNVTWTGVTEFSSNEALFDGGAIATPLSGVSFSPLDSTLTVRXXXXXXXXXXXXXXXXLALLGGCAADLGSADVVFSGNSADVAGGAVFLSSTGFGPTFSGASFVSNSAQVGGAVSTVGSGNTKDDIGVEASNPTTFDSCRFTGNTATATGGAVESAAGLDAYVGSVFEGNRA 627 GGA+ + S+VSW G + XXXXXXXX NGS V+ T + + S SP DSTL++ LALLGG + + + + F NSA++AGGAV++S T GPTFS F SNSAQVGGAVS++GSGN K + PTTF CRFT N ATATGGAV+SA+G D + +VF GN+A Sbjct: 245 GGALWLTDSSVSWGGGTEFISXXXXXXXXXXXXLNGSYVSSTXXXXXXXXXXXXXXXXVGSVASDSVLSPEDSTLSIDGPTAFVNNTSGENGGALALLGGLSISVNTGETSFVDNSANLAGGAVYVSDTAIGPTFSDVIFDSNSAQVGGAVSSLGSGNVKGGENDQLL-PTTFSRCRFTFNRATATGGAVDSASGQDLFEDTVFRGNQA 452
BLAST of mRNA_L-elsbetiae_contig17253.4811.1 vs. uniprot
Match: A0A6H5K1P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P8_9PHAE) HSP 1 Score: 112 bits (281), Expect = 3.820e-23 Identity = 96/253 (37.94%), Postives = 129/253 (50.99%), Query Frame = -3 Query: 1 NRAGNGGGAMAVAYSSEVSCG-GPCRFSGNTARA-GGAMTVGFSTVSWS--------AGVALVXXXXXXXXXLFIYNGSNVTWTGVTEFSSNEALFDGGAIATPLSGVSFSPLDSTLTVRXXXXXXXXXXXXXXXXLALLGGCAAD-LGSADVVFSGNSADVAGGAVFLSSTGFGPTFSGASFVSNSAQVGGAVSTVGSGNTKDDIGVEASNPTTFDSCRFTGNTATATGGAVESAAGLDAYVGSVFEGNRAG 726 N G GGGA++ + VS G G F GN A GA+ S +SW+ + ++LV NV+WTG T F+SN A +GG I + + S +T+ + L A + + + D+ F GNSA VAGGA+FLS GP F+ +F SN A++GGAVS+ G + GV+ NPTTFD CRF N +TGGA+ESAAG DA+ GS+FEGN AG Sbjct: 534 NFVGFGGGAISATQGARVSWGEGTATFLGNVASCRAGALDCIDSYISWAGTAEFNGNSALSLVNSTLGEEGGAASVLSCNVSWTGETIFTSNVAQSEGGGITASSAN---DGILSNITMNATTIFFNNTAATNGRAIVLFEDAALNSIFNMDISFVGNSAGVAGGAIFLSGVDTGPIFTEVNFTSNVAEIGGAVSSFRCGI--EPSGVD--NPTTFDRCRFVDNQGASTGGAIESAAGKDAFNGSIFEGNSAG 779
BLAST of mRNA_L-elsbetiae_contig17253.4811.1 vs. uniprot
Match: D7FTI5_ECTSI (Polymorphic outer membrane protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTI5_ECTSI) HSP 1 Score: 110 bits (274), Expect = 3.150e-22 Identity = 116/266 (43.61%), Postives = 142/266 (53.38%), Query Frame = -3 Query: 1 TEFQDNRAGNGGGAMAVAYSSEVSCG-GPCRFSGNTAR-AGGAMTVGFSTVSWSAGVALVXXXXXXXXXLFIYNGS-------------NVTWTGVTEFSSNEALFDGGAIATPLSGVSFSPLDSTLTVRXXXXXXXXXXXXXXXXLALLGGCAADLG-SADVVFSGNSADVAGGAVFLSSTGFGPTFSGASFVSNSAQVGGAVSTVGSGNTKDDIGVEAS---NPTTFDSCRFTGNTATATGGAVESAAGLDAYVGSVFEGNRAG 741 TEF N G GGGA++ + VS G G F GN A GA S +SWS + LF+ N + NV T F+SN A +GG I T SG + S +T+ XXXXXXXXXXXXXX + L A + + D+ F GNSA VAGGA+FLS GP F+ +F SN A++GGAVS G G+E S NPTTFD CRF N +TGGA+ESAAG DA+ GS+FEGN AG Sbjct: 803 TEFDTNFVGFGGGAISATEGARVSWGEGTTTFLGNFASYRAGAFDCIDSYISWSGTTEFIGNSA-----LFLVNSTLGGEGGAASVLSCNVXXXXXTIFTSNVAQSEGGGI-TASSGND--GILSNITMNAXXXXXXXXXXXXXXAIVLFEDAALNTSFNVDISFVGNSAGVAGGAIFLSGVDTGPIFTEVNFTSNVAEIGGAVSLFG-------CGIEPSGGDNPTTFDRCRFVDNQGASTGGAIESAAGKDAFNGSIFEGNSAG 1053 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17253.4811.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 20
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig17253.4811.1 >prot_L-elsbetiae_contig17253.4811.1 ID=prot_L-elsbetiae_contig17253.4811.1|Name=mRNA_L-elsbetiae_contig17253.4811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=227bp ARPVALEDAADVGVQPGGALDRPARRCRRVAREAAAVERRRVRRLDADVVback to top mRNA from alignment at L-elsbetiae_contig17253:275..1485+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig17253.4811.1 ID=mRNA_L-elsbetiae_contig17253.4811.1|Name=mRNA_L-elsbetiae_contig17253.4811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1211bp|location=Sequence derived from alignment at L-elsbetiae_contig17253:275..1485+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig17253:275..1485+ >mRNA_L-elsbetiae_contig17253.4811.1 ID=mRNA_L-elsbetiae_contig17253.4811.1|Name=mRNA_L-elsbetiae_contig17253.4811.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1362bp|location=Sequence derived from alignment at L-elsbetiae_contig17253:275..1485+ (Laminarionema elsbetiae ELsaHSoW15)back to top |