mRNA_L-elsbetiae_contig1724.4803.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1724.4803.1
Unique NamemRNA_L-elsbetiae_contig1724.4803.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1724.4803.1 vs. uniprot
Match: A0A6H5JIM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM1_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.760e-18
Identity = 57/102 (55.88%), Postives = 64/102 (62.75%), Query Frame = -2 
Query:    3 PFHPASA-EVGQLLDLGLALGHERFELVSLVGREEARTIAAHDWASCGDGRTRRDS------ERATTTGMHLMDDTLRSRPRPPAGHDDVKAQAVREELRRE 287
            P HPA+  EVGQLLDLGLALGHERFELVSLVGREE   +AAH WA C +G  RR S        ATT  +    D   +R R  +   DVK QA RE+L RE
Sbjct:   37 PSHPAATTEVGQLLDLGLALGHERFELVSLVGREETGMVAAHAWAEC-EGSVRRPSGGDPRASTATTIRITQPHDASTTRSRQASHGGDVKVQAGREKLLRE 137
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1724.4803.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIM1_9PHAE1.760e-1855.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1724contigL-elsbetiae_contig1724:2821..3182 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size362
Cds size360
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815718.5982783-CDS-L-elsbetiae_contig1724:2820..31801622815718.5982783-CDS-L-elsbetiae_contig1724:2820..3180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1724 2821..3180 +
1691683057.6299944-CDS-L-elsbetiae_contig1724:2820..31801691683057.6299944-CDS-L-elsbetiae_contig1724:2820..3180Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1724 2821..3180 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1724.4803.1prot_L-elsbetiae_contig1724.4803.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1724 2821..3180 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1724.4803.1

>prot_L-elsbetiae_contig1724.4803.1 ID=prot_L-elsbetiae_contig1724.4803.1|Name=mRNA_L-elsbetiae_contig1724.4803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
TSLRNSSRTACAFTSSWPAGGRGRLRNVSSIRCMPVVVALSESLLVLPSP
QEAQSCAAIVRASSRPTRLTSSKRSWPSAKPRSSSWPTSADAGWKGRYLS
SLSRSTTLTLTCWRMGILLV
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mRNA from alignment at L-elsbetiae_contig1724:2821..3182+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1724.4803.1 ID=mRNA_L-elsbetiae_contig1724.4803.1|Name=mRNA_L-elsbetiae_contig1724.4803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=362bp|location=Sequence derived from alignment at L-elsbetiae_contig1724:2821..3182+ (Laminarionema elsbetiae ELsaHSoW15)
ACCTCTCTGCGCAACTCCTCTCGCACGGCCTGCGCCTTCACGTCGTCGTG
GCCCGCCGGCGGCCGTGGGCGGCTTCGCAACGTATCGTCCATCAGGTGCA
TGCCTGTTGTTGTTGCTCTTTCCGAGTCTCTCCTCGTCCTGCCATCGCCG
CAGGAAGCCCAGTCGTGCGCTGCTATCGTCCGAGCCTCTTCCCGACCAAC
GAGGCTCACGAGCTCGAAGCGCTCGTGGCCTAGCGCTAAGCCAAGGTCCA
GCAGCTGGCCGACCTCGGCCGATGCTGGGTGGAAAGGAAGATACTTGTCA
TCACTCTCTCGATCCACAACATTGACGTTGACATGCTGGCGGATGGGCAT
TCTTCTCGTGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1724:2821..3182+

>mRNA_L-elsbetiae_contig1724.4803.1 ID=mRNA_L-elsbetiae_contig1724.4803.1|Name=mRNA_L-elsbetiae_contig1724.4803.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig1724:2821..3182+ (Laminarionema elsbetiae ELsaHSoW15)
ACCTCTCTGCGCAACTCCTCTCGCACGGCCTGCGCCTTCACGTCGTCGTG
GCCCGCCGGCGGCCGTGGGCGGCTTCGCAACGTATCGTCCATCAGGTGCA
TGCCTGTTGTTGTTGCTCTTTCCGAGTCTCTCCTCGTCCTGCCATCGCCG
CAGGAAGCCCAGTCGTGCGCTGCTATCGTCCGAGCCTCTTCCCGACCAAC
GAGGCTCACGAGCTCGAAGCGCTCGTGGCCTAGCGCTAAGCCAAGGTCCA
GCAGCTGGCCGACCTCGGCCGATGCTGGGTGGAAAGGAAGATACTTGTCA
TCACTCTCTCGATCCACAACATTGACGTTGACATGCTGGCGGATGGGCAT
TCTTCTCGTGACCTCTCTGCGCAACTCCTCTCGCACGGCCTGCGCCTTCA
CGTCGTCGTGGCCCGCCGGCGGCCGTGGGCGGCTTCGCAACGTATCGTCC
ATCAGGTGCATGCCTGTTGTTGTTGCTCTTTCCGAGTCTCTCCTCGTCCT
GCCATCGCCGCAGGAAGCCCAGTCGTGCGCTGCTATCGTCCGAGCCTCTT
CCCGACCAACGAGGCTCACGAGCTCGAAGCGCTCGTGGCCTAGCGCTAAG
CCAAGGTCCAGCAGCTGGCCGACCTCGGCCGATGCTGGGTGGAAAGGAAG
ATACTTGTCATCACTCTCTCGATCCACAACATTGACGTTGACATGCTGGC
GGATGGGCATTCTTCTCGTG
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