mRNA_L-elsbetiae_contig1723.4800.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1723.4800.1 vs. uniprot
Match: D8LEM9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEM9_ECTSI) HSP 1 Score: 243 bits (620), Expect = 7.820e-70 Identity = 135/230 (58.70%), Postives = 158/230 (68.70%), Query Frame = 2 Query: 1736 RLRLGSYGGPSPAPATAARDAEAVAGPDGGPGG------SGAGKKREVDWNELKRNLNLLLKEEGEFTPRDLNHAFQTRFGKSPFLDGTPLRYAVSAGWLRGVCFDVSSNTYNLAVRVPAHRREDPPEGAAPFPPARPR---AVPRREPAAPVTPSTMSPDGVDWQQLSSEFQQLLLPGALEAKEIHASYHATFRKPLIIGAGYSMRQAVIDGRLRGIALERGSRRLMCA 2398 +LR G+ PS A A+ D G GG + A +KR VDW ELK NLN LLKEEGE T RDLNHAFQ RFGKSPFLDGTPLRYAVSAGWL+GVC+D+++ +NL VRVPA RREDPP+GA FPP + PRR+ P ++SPD DW +LS+EF+QLLL GALE KE+H YH FRKPLI+G GY+MRQAV G L GI + GSRRLMCA Sbjct: 93 QLRFGTSAAPSQAAGRAS---------DAGVGGVTSRPHALAPQKRGVDWRELKGNLNFLLKEEGELTGRDLNHAFQQRFGKSPFLDGTPLRYAVSAGWLKGVCYDLTNKCFNLTVRVPAGRREDPPDGAPTFPPTGSQLRAGAPRRD-----VPRSLSPDDFDWGRLSTEFRQLLLQGALEPKEVHVKYHREFRKPLILGEGYNMRQAVTAGLLIGITFDPGSRRLMCA 308
BLAST of mRNA_L-elsbetiae_contig1723.4800.1 vs. uniprot
Match: A0A6H5KX85_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX85_9PHAE) HSP 1 Score: 225 bits (574), Expect = 1.490e-60 Identity = 282/648 (43.52%), Postives = 331/648 (51.08%), Query Frame = 2 Query: 80 DVAPMTAAATPQEFLVKDLKSKLQATNVRERELHKHLLHHMQEKELLVNQVAELQRVCEALLLSQMQGDDSGTAAQAATAXXXXXLSSADVVAPDTLNTDATASDAAYNNGGAAAADAHSAAGVDPRAPKETAESERASLKLAAGGXXGETTPCADAGQPATQQHRSTSSSSLPVPDTGASALGPKPGAVLARPKDYGAVAVPPAATAAAVGVALKSPSSIALKSILGVAGGSTSVPGSK-------GTAGALNTTGPAAAAXXAAVHARAAGTDPTVDIPQLLVERGGRIRITALWEAYQNRFGETRYSLKDLFSMVKAGAIPFVVHEPPAGIRLLPSAPIYQQRQQQHLEQXXXXXXXXXXXXLXXXXXXXLLQXXXXXXXXXXXXXXXXQRRVAAELAALSQSYLAQGGSGAASPSVGPASSGVGDDADNMGHNRQQXXXXXXXXXXHSFSLPSPLMSALARLPGAQPSRESATTAGGIGSASDDSISFGWTSGEPSSASSPLGWQRPGSTAA------AAAAAAGNDKLGAESYDNDAADAXXXXXXXXXXXXXXGTADRGRLRLGSYGGPSPAPATAARDAEAVAGPDGGPGG------SGAGKKREVDWNELKRNLNLLLKEEGEFTPRDLNHAFQTRFGKS 1966 DVA AA + ++F+V+DLK KL+A VRERELH+HLLHHM+EK+LLVN VAELQRVCEALLLSQMQG G A XXXXXLS +T A ++ NNG A A AAG P T + +R + P AD + A QQ TSSS + T ASA AV A P G + AA+A A P S LK+I+ V G S S +++ P A H R AG+ P +DIPQLL+ERGGRIRITALWEAYQ RFGETRY+LKDLF+MVKAG IPFVVHEPPAGIRLLPSAP+YQQRQ L QXXXXXXXXXXXX XXXXXXX XXXXXXXXXXXXXX AA AA Q+Y Q + S PA S G+ ++G S + P L Q TT G + PG+TA+ AA A +D E ++D+ +LR G PS A A+ D G GG + A +KR VDW ELK N+NLLLKEEGE T RDLNHAFQ RFGK+ Sbjct: 8 DVAATAAAPSARDFVVEDLKDKLRAAAVRERELHQHLLHHMEEKDLLVNHVAELQRVCEALLLSQMQGT-GGPAXXXXXXXXXXXLS----------HTAALNANEKRNNG--AKVIASDAAGDIAAEP--TKQPDR------------QVWPGADMSRHAAQQQCLTSSSLKAITGTVASAPA---AAVAAYP---GRLLEQDAASATAT-AGNNPPPSGTLKAIVDVRGAGRSNASSVVEIHDGGRKEEERSSSAPVPLNSAVARHMRPAGSGPAIDIPQLLLERGGRIRITALWEAYQARFGETRYTLKDLFAMVKAGEIPFVVHEPPAGIRLLPSAPVYQQRQ---LRQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------AAAQAAFIQAYRTQ-----EAASASPAMSATGNTGADIGTTGVAPPHQQRQQPQQSQAFVQPPAIGYPSLETDQHMSLDDTTTGCV----------------------------PGTTASDDNKDDAAETAGDSDGWAEEKQEDDS---------------------EHQLRFGISAAPSQAAGRAS---------DAGVGGVTSRPHAVAPQKRGVDWKELKGNVNLLLKEEGELTGRDLNHAFQQRFGKA 549 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1723.4800.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1723.4800.1 >prot_L-elsbetiae_contig1723.4800.1 ID=prot_L-elsbetiae_contig1723.4800.1|Name=mRNA_L-elsbetiae_contig1723.4800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=789bp MHEVPRPGPATTSSQDVAPMTAAATPQEFLVKDLKSKLQATNVRERELHKback to top mRNA from alignment at L-elsbetiae_contig1723:8381..15639- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1723.4800.1 ID=mRNA_L-elsbetiae_contig1723.4800.1|Name=mRNA_L-elsbetiae_contig1723.4800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7259bp|location=Sequence derived from alignment at L-elsbetiae_contig1723:8381..15639- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1723:8381..15639- >mRNA_L-elsbetiae_contig1723.4800.1 ID=mRNA_L-elsbetiae_contig1723.4800.1|Name=mRNA_L-elsbetiae_contig1723.4800.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4734bp|location=Sequence derived from alignment at L-elsbetiae_contig1723:8381..15639- (Laminarionema elsbetiae ELsaHSoW15)back to top |