mRNA_L-elsbetiae_contig1721.4792.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1721.4792.1
Unique NamemRNA_L-elsbetiae_contig1721.4792.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1721.4792.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1721contigL-elsbetiae_contig1721:19869..21073 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-00_008670.1
Exons3
Model size440
Cds size294
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1721.4792.1prot_L-elsbetiae_contig1721.4792.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1721 19917..20423 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.4719667-UTR-L-elsbetiae_contig1721:19868..199161622815717.4719667-UTR-L-elsbetiae_contig1721:19868..19916Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1721 19869..19916 +
1691683056.8933153-UTR-L-elsbetiae_contig1721:19868..199161691683056.8933153-UTR-L-elsbetiae_contig1721:19868..19916Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1721 19869..19916 +
1622815717.5124626-UTR-L-elsbetiae_contig1721:20423..204371622815717.5124626-UTR-L-elsbetiae_contig1721:20423..20437Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1721 20424..20437 +
1691683056.9267707-UTR-L-elsbetiae_contig1721:20423..204371691683056.9267707-UTR-L-elsbetiae_contig1721:20423..20437Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1721 20424..20437 +
1622815717.5236428-UTR-L-elsbetiae_contig1721:20989..210731622815717.5236428-UTR-L-elsbetiae_contig1721:20989..21073Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1721 20990..21073 +
1691683056.937682-UTR-L-elsbetiae_contig1721:20989..210731691683056.937682-UTR-L-elsbetiae_contig1721:20989..21073Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1721 20990..21073 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.4856915-CDS-L-elsbetiae_contig1721:19916..200201622815717.4856915-CDS-L-elsbetiae_contig1721:19916..20020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1721 19917..20020 +
1691683056.9051704-CDS-L-elsbetiae_contig1721:19916..200201691683056.9051704-CDS-L-elsbetiae_contig1721:19916..20020Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1721 19917..20020 +
1622815717.501632-CDS-L-elsbetiae_contig1721:20233..204231622815717.501632-CDS-L-elsbetiae_contig1721:20233..20423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1721 20234..20423 +
1691683056.9151328-CDS-L-elsbetiae_contig1721:20233..204231691683056.9151328-CDS-L-elsbetiae_contig1721:20233..20423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1721 20234..20423 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1721.4792.1

>prot_L-elsbetiae_contig1721.4792.1 ID=prot_L-elsbetiae_contig1721.4792.1|Name=mRNA_L-elsbetiae_contig1721.4792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
MSSIVLCSFSKCAYATAAALYIVGAIVDVIAVVSWLAWSDQFDKDADAHA
EVVVFLTVPPGIGAATFVVGAVFALKAVCNWKLSGAVNGGAVPMPAC*
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mRNA from alignment at L-elsbetiae_contig1721:19869..21073+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1721.4792.1 ID=mRNA_L-elsbetiae_contig1721.4792.1|Name=mRNA_L-elsbetiae_contig1721.4792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1205bp|location=Sequence derived from alignment at L-elsbetiae_contig1721:19869..21073+ (Laminarionema elsbetiae ELsaHSoW15)
CTCGCCGTCCCGAAAGTGCAATGGGTCGCGAGCCTCATCGGGATCATAAT
GTCCAGCATCGTACTTTGCTCGTTCAGCAAGTGCGCCTATGCCACCGCTG
CTGCTCTCTACATCGTCGGAGCGATCGTAGACGTGATCGCCGTGGTGTCG
TGGTGAGTCAGAGAGGGTGCACAAGCTTTCGTGGCCGAGGATTTTGGGCG
AATATTTATGCGAAGGTAACCCCGCCGCAATTTATTAGCTTTGCGCGTTT
CCCTGTTCCTTCCTGTGTACGCGAACGGGGCAGAGTCGCTCGACTGCTAT
CGCGTACTATACGACTAACACCCGGCGCCCCTTGCCTACCGCCAAACTCC
TCTTCCGTACACAAGGCTCGCCTGGAGTGACCAGTTCGACAAAGACGCCG
ATGCGCATGCCGAAGTGGTGGTTTTTTTAACCGTACCGCCTGGTATCGGG
GCAGCTACCTTCGTCGTGGGAGCTGTGTTTGCGCTCAAGGCCGTGTGTAA
CTGGAAGCTGAGCGGTGCCGTGAACGGTGGCGCTGTCCCTATGCCTGCTT
GTTAATAAGGAGCGCACACGTGAGTTTGAATGCTGGTTGTAGTGGGGATA
TAATCTATTCCATGACCGGGTTTGGTTTGTGAGGTCGACAGCACAAAACA
AAGCGGCGTGATGTTTCTTCATCACCCCGTCATCCTCCTCTCGCGCGGAC
AGGTCGAACGCGTTGGGGGTGACACGACAGTGCCGCTGAAAGTTGTCCGT
TCTCGGGTTATTCCCTGAGGAATGCTGTTTTGATTTCCGGGACAGCATGA
TCGCCGCGATTTCGCAGGGACGGCAACCCTGGGGGTTGAATTCCAAGTTC
TTGGCTTAACAGCTAGAAGGACACGGGCATTAGCTTTTATGAGAAGCATG
TATGACCACTGGACTACCAGTCATCGCTGACTGGTAGTCCAGTGCTCATT
CGTGCTTCTAACAAAACGAACAACGACGAGCAACCGTCGAGAGCACACTC
CCACCGGGTGCTGTCGTATGTACTGGTGGGTACATAAACACCACGACAAC
TGACACACACCCTTTCTGGCATGTCTAACTCCCAATCTGCATAACTACAT
ACTATCCTTTTTTTCGACCAGGCTGCCATGCCGAGATTTACCTCCTCCTC
CTTCGTTGACATCCCGAGTGTCAGCCGCGCACGGCACAATCTACTACCGT
AGATT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1721:19869..21073+

>mRNA_L-elsbetiae_contig1721.4792.1 ID=mRNA_L-elsbetiae_contig1721.4792.1|Name=mRNA_L-elsbetiae_contig1721.4792.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig1721:19869..21073+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCAGCATCGTACTTTGCTCGTTCAGCAAGTGCGCCTATGCCACCGC
TGCTGCTCTCTACATCGTCGGAGCGATCGTAGACGTGATCGCCGTGGTGT
CGTGATGTCCAGCATCGTACTTTGCTCGTTCAGCAAGTGCGCCTATGCCA
CCGCTGCTGCTCTCTACATCGTCGGAGCGATCGTAGACGTGATCGCCGTG
GTGTCGTGGCTCGCCTGGAGTGACCAGTTCGACAAAGACGCCGATGCGCA
TGCCGAAGTGGTGGTTTTTTTAACCGTACCGCCTGGTATCGGGGCAGCTA
CCTTCGTCGTGGGAGCTGTGTTTGCGCTCAAGGCCGTGTGTAACTGGAAG
CTGAGCGGTGCCGTGAACGGTGGCGCTGTCCCTATGCCTGCTTGTTAAGC
TCGCCTGGAGTGACCAGTTCGACAAAGACGCCGATGCGCATGCCGAAGTG
GTGGTTTTTTTAACCGTACCGCCTGGTATCGGGGCAGCTACCTTCGTCGT
GGGAGCTGTGTTTGCGCTCAAGGCCGTGTGTAACTGGAAGCTGAGCGGTG
CCGTGAACGGTGGCGCTGTCCCTATGCCTGCTTGTTAA
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