mRNA_L-elsbetiae_contig17203.4789.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17203.4789.1
Unique NamemRNA_L-elsbetiae_contig17203.4789.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17203.4789.1 vs. uniprot
Match: A0A835Z5F1_9STRA (WW domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z5F1_9STRA)

HSP 1 Score: 135 bits (341), Expect = 1.650e-39
Identity = 61/76 (80.26%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:    4 VAGDSIVLEEEIDQNYVPSEAEVREYAKWLGMELDDDVDLFWIAKEGLKAPLPENWKPCKTVDTDEIYYFNFATGE 231
            V GDSI+LEEEID NYVP+E EV EYAKWLGM+LD D  +FWIAKEGLKAPLPE+WKPCKTVDT+EIYYFNF TG+
Sbjct:   29 VQGDSIILEEEIDPNYVPTEEEVMEYAKWLGMDLDKDRGMFWIAKEGLKAPLPEHWKPCKTVDTEEIYYFNFLTGD 104
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BLAST of mRNA_L-elsbetiae_contig17203.4789.1 vs. uniprot
Match: A0A482S029_9ARCH (WW domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S029_9ARCH)

HSP 1 Score: 132 bits (333), Expect = 1.290e-38
Identity = 61/75 (81.33%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:    7 AGDSIVLEEEIDQNYVPSEAEVREYAKWLGMELDDDVDLFWIAKEGLKAPLPENWKPCKTVDTDEIYYFNFATGE 231
            A DSIVLEEEID NYVPSE EV +YAKW+GM+LD D DLFWIA+EGL APLP NWKPCKT DTD+IYYFNFATGE
Sbjct:   12 AQDSIVLEEEIDPNYVPSEQEVVDYAKWMGMDLDADKDLFWIAREGLMAPLPTNWKPCKTKDTDDIYYFNFATGE 86
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BLAST of mRNA_L-elsbetiae_contig17203.4789.1 vs. uniprot
Match: A0A2D4BW60_PYTIN (WW domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BW60_PYTIN)

HSP 1 Score: 136 bits (342), Expect = 5.260e-36
Identity = 61/77 (79.22%), Postives = 68/77 (88.31%), Query Frame = 1 
Query:    1 GVAGDSIVLEEEIDQNYVPSEAEVREYAKWLGMELDDDVDLFWIAKEGLKAPLPENWKPCKTVDTDEIYYFNFATGE 231
            G  GDSIVLEEEID NY PSE EV EYA WLGM+L+++ DLFWIA+EGLKAPLPENWKPCKT DT+EIYYFNFATG+
Sbjct:    3 GAQGDSIVLEEEIDPNYEPSEREVLEYASWLGMDLENEQDLFWIAREGLKAPLPENWKPCKTTDTEEIYYFNFATGQ 79
[Close]
BLAST of mRNA_L-elsbetiae_contig17203.4789.1 vs. uniprot
Match: A0A8K1CGE3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CGE3_PYTOL)

HSP 1 Score: 135 bits (340), Expect = 4.500e-35
Identity = 62/77 (80.52%), Postives = 67/77 (87.01%), Query Frame = 1 
Query:    1 GVAGDSIVLEEEIDQNYVPSEAEVREYAKWLGMELDDDVDLFWIAKEGLKAPLPENWKPCKTVDTDEIYYFNFATGE 231
            G  GDSIVLEEEID NY PSE EV EYA WLGM+LD + DLFWIA+EGLKAPLPENWKPCKT DT+EIYYFNFATG+
Sbjct:    3 GGQGDSIVLEEEIDPNYEPSEKEVLEYASWLGMDLDAEQDLFWIAREGLKAPLPENWKPCKTTDTEEIYYFNFATGQ 79
[Close]
BLAST of mRNA_L-elsbetiae_contig17203.4789.1 vs. uniprot
Match: A0A1V9ZS40_9STRA (Glutamic acid-rich protein (Fragment) n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZS40_9STRA)

HSP 1 Score: 133 bits (335), Expect = 2.120e-34
Identity = 62/76 (81.58%), Postives = 67/76 (88.16%), Query Frame = 1 
Query:    1 GVAGDSIVLEEEIDQNYVPSEAEVREYAKWLGMELDDDVDLFWIAKEGLKAPLPENWKPCKTVDTDEIYYFNFATG 228
            G AGDSIVLEEEID NY P+E EV EYAKWLGM+L+ + DLFWIA+EGLKAPLPENWKPCKT DT EIYYFNFATG
Sbjct:    3 GGAGDSIVLEEEIDPNYEPTEDEVLEYAKWLGMDLEAERDLFWIAREGLKAPLPENWKPCKTTDTGEIYYFNFATG 78
[Close]
BLAST of mRNA_L-elsbetiae_contig17203.4789.1 vs. uniprot
Match: A0A1V9ZYT3_9STRA (Centrosomal protein (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZYT3_9STRA)

HSP 1 Score: 132 bits (332), Expect = 5.370e-34
Identity = 61/74 (82.43%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:    7 AGDSIVLEEEIDQNYVPSEAEVREYAKWLGMELDDDVDLFWIAKEGLKAPLPENWKPCKTVDTDEIYYFNFATG 228
            AGDSIVLEEEID NY P+E EV EYAKWLGM+LD + DLFWIA+EGLKAPLPENWKPCKT DT EIYYFNFA+G
Sbjct:    5 AGDSIVLEEEIDPNYEPTEDEVLEYAKWLGMDLDAERDLFWIAREGLKAPLPENWKPCKTTDTGEIYYFNFASG 78
[Close]
BLAST of mRNA_L-elsbetiae_contig17203.4789.1 vs. uniprot
Match: A0A6G0XSA2_9STRA (WW domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XSA2_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.010e-33
Identity = 61/76 (80.26%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 GVAGDSIVLEEEIDQNYVPSEAEVREYAKWLGMELDDDVDLFWIAKEGLKAPLPENWKPCKTVDTDEIYYFNFATG 228
            G  GDSIVLEEEID NY P+E EV EYAKWLGM+L+ + DLFWIA+EGLKAPLPENWKPCKT DT EIYYFNFATG
Sbjct:    3 GGQGDSIVLEEEIDPNYEPTEDEVLEYAKWLGMDLEAERDLFWIAREGLKAPLPENWKPCKTTDTGEIYYFNFATG 78
[Close]
BLAST of mRNA_L-elsbetiae_contig17203.4789.1 vs. uniprot
Match: A0A485KW62_9STRA (Aste57867_12659 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KW62_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.010e-33
Identity = 61/76 (80.26%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:    1 GVAGDSIVLEEEIDQNYVPSEAEVREYAKWLGMELDDDVDLFWIAKEGLKAPLPENWKPCKTVDTDEIYYFNFATG 228
            G  GDSIVLEEEID NY P+E EV EYAKWLGM+LD + DLFWIA+EGLKAPLPENWKPCKT DT EIYYFNFA+G
Sbjct:    3 GGQGDSIVLEEEIDPNYEPTEDEVLEYAKWLGMDLDAERDLFWIAREGLKAPLPENWKPCKTTDTGEIYYFNFASG 78
[Close]
BLAST of mRNA_L-elsbetiae_contig17203.4789.1 vs. uniprot
Match: A0A8J2SJ42_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJ42_9STRA)

HSP 1 Score: 131 bits (329), Expect = 1.360e-33
Identity = 58/74 (78.38%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:   10 GDSIVLEEEIDQNYVPSEAEVREYAKWLGMELDDDVDLFWIAKEGLKAPLPENWKPCKTVDTDEIYYFNFATGE 231
            GDSI+LEEEID NYVPS+ E+ EYAKWLGM+L  D DL WIA+EGLKAPLPE+WKPCKT DTDEIYYFNF++GE
Sbjct:   15 GDSIILEEEIDPNYVPSQDEIDEYAKWLGMDLQQDKDLQWIAREGLKAPLPEHWKPCKTTDTDEIYYFNFSSGE 88
[Close]
BLAST of mRNA_L-elsbetiae_contig17203.4789.1 vs. uniprot
Match: W2PDH2_PHYPN (WW domain-containing protein n=17 Tax=Phytophthora TaxID=4783 RepID=W2PDH2_PHYPN)

HSP 1 Score: 131 bits (329), Expect = 1.370e-33
Identity = 59/74 (79.73%), Postives = 66/74 (89.19%), Query Frame = 1 
Query:   10 GDSIVLEEEIDQNYVPSEAEVREYAKWLGMELDDDVDLFWIAKEGLKAPLPENWKPCKTVDTDEIYYFNFATGE 231
            GDSIVLEEEID NY P+E EV EYA WLGM+L+ + DLFWIA+EGLKAPLPENWKPCKT DT+EIYYFNFATG+
Sbjct:    4 GDSIVLEEEIDPNYEPTEKEVLEYATWLGMDLEAERDLFWIAREGLKAPLPENWKPCKTTDTEEIYYFNFATGQ 77
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17203.4789.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z5F1_9STRA1.650e-3980.26WW domain-containing protein (Fragment) n=1 Tax=Tr... [more]
A0A482S029_9ARCH1.290e-3881.33WW domain-containing protein n=1 Tax=archaeon TaxI... [more]
A0A2D4BW60_PYTIN5.260e-3679.22WW domain-containing protein n=1 Tax=Pythium insid... [more]
A0A8K1CGE3_PYTOL4.500e-3580.52Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9ZS40_9STRA2.120e-3481.58Glutamic acid-rich protein (Fragment) n=1 Tax=Achl... [more]
A0A1V9ZYT3_9STRA5.370e-3482.43Centrosomal protein (Fragment) n=1 Tax=Thraustothe... [more]
A0A6G0XSA2_9STRA1.010e-3380.26WW domain-containing protein n=1 Tax=Aphanomyces e... [more]
A0A485KW62_9STRA1.010e-3380.26Aste57867_12659 protein n=1 Tax=Aphanomyces stella... [more]
A0A8J2SJ42_9STRA1.360e-3378.38Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
W2PDH2_PHYPN1.370e-3379.73WW domain-containing protein n=17 Tax=Phytophthora... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17203contigL-elsbetiae_contig17203:824..1227 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score132.5
Seed ortholog evalue9.5e-29
Seed eggNOG ortholog157072.XP_008869426.1
Preferred nameCEP164
KEGG koko:K16462
Hectar predicted targeting categoryother localisation
GOsGO:0000086,GO:0000278,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005813,GO:0005814,GO:0005815,GO:0005829,GO:0005856,GO:0005929,GO:0006996,GO:0007049,GO:0007346,GO:0008150,GO:0009987,GO:0010389,GO:0010564,GO:0015630,GO:0016043,GO:0022402,GO:0022406,GO:0022607,GO:0030030,GO:0030031,GO:0031974,GO:0031981,GO:0032991,GO:0042995,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044450,GO:0044463,GO:0044464,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0050789,GO:0050794,GO:0051179,GO:0051640,GO:0051641,GO:0051726,GO:0060271,GO:0065007,GO:0070013,GO:0070925,GO:0071840,GO:0097539,GO:0097711,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:0140056,GO:1901987,GO:1901990,GO:1902749,GO:1903047
EggNOG free text desc.cilium assembly
EggNOG OGs28IT0@1,2QR4A@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size261
Cds size261
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.1555808-CDS-L-elsbetiae_contig17203:823..8861622815717.1555808-CDS-L-elsbetiae_contig17203:823..886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17203 824..886 +
1691683056.6801152-CDS-L-elsbetiae_contig17203:823..8861691683056.6801152-CDS-L-elsbetiae_contig17203:823..886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17203 824..886 +
1622815717.1658745-CDS-L-elsbetiae_contig17203:1029..12271622815717.1658745-CDS-L-elsbetiae_contig17203:1029..1227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17203 1030..1227 +
1691683056.6912796-CDS-L-elsbetiae_contig17203:1029..12271691683056.6912796-CDS-L-elsbetiae_contig17203:1029..1227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17203 1030..1227 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17203.4789.1prot_L-elsbetiae_contig17203.4789.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17203 824..1227 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17203.4789.1

>prot_L-elsbetiae_contig17203.4789.1 ID=prot_L-elsbetiae_contig17203.4789.1|Name=mRNA_L-elsbetiae_contig17203.4789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
GVAGDSIVLEEEIDQNYVPSEAEVREYAKWLGMELDDDVDLFWIAKEGLK
APLPENWKPCKTVDTDEIYYFNFATGELLSCMFARC*
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mRNA from alignment at L-elsbetiae_contig17203:824..1227+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17203.4789.1 ID=mRNA_L-elsbetiae_contig17203.4789.1|Name=mRNA_L-elsbetiae_contig17203.4789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=404bp|location=Sequence derived from alignment at L-elsbetiae_contig17203:824..1227+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGTTGCTGGAGACAGCATTGTGCTCGAGGAGGAGATCGATCAGAACTA
CGTGCCTAGTGAGGTAAAAGCAAAAGAGATGTTTCTTCTTTTTCTATTTT
TCTCTCTCTCTCGTTCTCGCTTTTGCATATGCACGCAGATCAGAAATATA
TTCCACATGCCACGAGAACGTCTTGAGCCGGTTTGTATGATTCGGTCTGC
CCGCAGGCGGAGGTGCGCGAGTACGCGAAATGGCTGGGCATGGAGTTGGA
CGATGATGTCGACCTTTTTTGGATTGCGAAAGAGGGTCTTAAGGCACCTC
TGCCAGAGAACTGGAAGCCTTGCAAGACCGTGGATACGGACGAGATTTAC
TACTTCAATTTTGCAACGGGTGAGCTTTTATCTTGCATGTTTGCTCGTTG
CTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17203:824..1227+

>mRNA_L-elsbetiae_contig17203.4789.1 ID=mRNA_L-elsbetiae_contig17203.4789.1|Name=mRNA_L-elsbetiae_contig17203.4789.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig17203:824..1227+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGTTGCTGGAGACAGCATTGTGCTCGAGGAGGAGATCGATCAGAACTA
CGTGCCTAGTGAGGGTGTTGCTGGAGACAGCATTGTGCTCGAGGAGGAGA
TCGATCAGAACTACGTGCCTAGTGAGGCGGAGGTGCGCGAGTACGCGAAA
TGGCTGGGCATGGAGTTGGACGATGATGTCGACCTTTTTTGGATTGCGAA
AGAGGGTCTTAAGGCACCTCTGCCAGAGAACTGGAAGCCTTGCAAGACCG
TGGATACGGACGAGATTTACTACTTCAATTTTGCAACGGGTGAGCTTTTA
TCTTGCATGTTTGCTCGTTGCTAAGCGGAGGTGCGCGAGTACGCGAAATG
GCTGGGCATGGAGTTGGACGATGATGTCGACCTTTTTTGGATTGCGAAAG
AGGGTCTTAAGGCACCTCTGCCAGAGAACTGGAAGCCTTGCAAGACCGTG
GATACGGACGAGATTTACTACTTCAATTTTGCAACGGGTGAGCTTTTATC
TTGCATGTTTGCTCGTTGCTAA
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