mRNA_L-elsbetiae_contig17202.4788.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17202.4788.1
Unique NamemRNA_L-elsbetiae_contig17202.4788.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17202.4788.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17202contigL-elsbetiae_contig17202:720..1533 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size814
Cds size417
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.1058815-UTR-L-elsbetiae_contig17202:719..11161622815717.1058815-UTR-L-elsbetiae_contig17202:719..1116Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17202 720..1116 +
1691683056.6618884-UTR-L-elsbetiae_contig17202:719..11161691683056.6618884-UTR-L-elsbetiae_contig17202:719..1116Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17202 720..1116 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815717.1191068-CDS-L-elsbetiae_contig17202:1116..15331622815717.1191068-CDS-L-elsbetiae_contig17202:1116..1533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17202 1117..1533 +
1691683056.6708744-CDS-L-elsbetiae_contig17202:1116..15331691683056.6708744-CDS-L-elsbetiae_contig17202:1116..1533Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17202 1117..1533 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17202.4788.1prot_L-elsbetiae_contig17202.4788.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17202 1117..1533 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17202.4788.1

>prot_L-elsbetiae_contig17202.4788.1 ID=prot_L-elsbetiae_contig17202.4788.1|Name=mRNA_L-elsbetiae_contig17202.4788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MLFSMAVCWEKMAFLGRFISGFRRFSFRVPSATVRFIHLMRVLALITTVG
TEHVFLWASSSIWDFFSIQFLRRRLGGGGHSILLIQGLSDEHDLIDFGMH
IFLGTYAKTDCTNSPKSTTFPIRLLASRCKIPLPIPTQ*
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mRNA from alignment at L-elsbetiae_contig17202:720..1533+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17202.4788.1 ID=mRNA_L-elsbetiae_contig17202.4788.1|Name=mRNA_L-elsbetiae_contig17202.4788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=814bp|location=Sequence derived from alignment at L-elsbetiae_contig17202:720..1533+ (Laminarionema elsbetiae ELsaHSoW15)
GCCATCTTCAAAGGAACGCATGAACTCCTCGCACTCGAGAACAATAGAGT
ACGCCCGCGCAAGCATCTCCTGGTATATCGAGTTTCGAAGCACGGCGTGC
GGTGAAGTGAACAGAAACGACCTCTGTACGTTGCAGAACGCGCCACCATT
TAAGAACCGCCTATTTTGCGAGGCTCGTTGCTTATTAGCTGCCCCAAACC
GAGCGCATGTTCGTATTTGAGTTCTTATTTCGGAGATATTTCCCAGTAAA
TCGCGGGTTCTTGTTCTTATGTCTGTACAAGCGCGTCATCCGGCCGAAAA
ATAAATTATTTGAAGTTTTGTTTCAGTTGCCGGGGATCTCGTACTACCTT
ACGATACGTAGTTAAACTAATTTCTGTTTTATCTCGAGTCCAAATCGATG
CTTTTCTCCATGGCCGTTTGCTGGGAAAAAATGGCGTTCTTGGGCCGTTT
TATAAGTGGATTTCGAAGGTTTTCGTTTCGTGTCCCTAGTGCCACAGTCC
GTTTTATACACCTCATGCGGGTTCTTGCTCTTATTACCACCGTCGGAACT
GAGCACGTGTTCTTATGGGCAAGTTCTTCTATTTGGGATTTTTTTAGCAT
TCAGTTCTTAAGGAGACGGTTAGGGGGGGGGGGGCACAGTATACTTTTGA
TCCAGGGGCTCAGTGACGAGCACGATTTGATCGATTTTGGAATGCACATT
TTTTTGGGTACATATGCGAAAACCGACTGCACGAACTCTCCCAAAAGCAC
CACTTTTCCAATTCGGCTCTTAGCGTCCCGCTGCAAGATCCCTCTACCCA
TTCCAACGCAATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17202:720..1533+

>mRNA_L-elsbetiae_contig17202.4788.1 ID=mRNA_L-elsbetiae_contig17202.4788.1|Name=mRNA_L-elsbetiae_contig17202.4788.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig17202:720..1533+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTTTCTCCATGGCCGTTTGCTGGGAAAAAATGGCGTTCTTGGGCCG
TTTTATAAGTGGATTTCGAAGGTTTTCGTTTCGTGTCCCTAGTGCCACAG
TCCGTTTTATACACCTCATGCGGGTTCTTGCTCTTATTACCACCGTCGGA
ACTGAGCACGTGTTCTTATGGGCAAGTTCTTCTATTTGGGATTTTTTTAG
CATTCAGTTCTTAAGGAGACGGTTAGGGGGGGGGGGGCACAGTATACTTT
TGATCCAGGGGCTCAGTGACGAGCACGATTTGATCGATTTTGGAATGCAC
ATTTTTTTGGGTACATATGCGAAAACCGACTGCACGAACTCTCCCAAAAG
CACCACTTTTCCAATTCGGCTCTTAGCGTCCCGCTGCAAGATCCCTCTAC
CCATTCCAACGCAATAGATGCTTTTCTCCATGGCCGTTTGCTGGGAAAAA
ATGGCGTTCTTGGGCCGTTTTATAAGTGGATTTCGAAGGTTTTCGTTTCG
TGTCCCTAGTGCCACAGTCCGTTTTATACACCTCATGCGGGTTCTTGCTC
TTATTACCACCGTCGGAACTGAGCACGTGTTCTTATGGGCAAGTTCTTCT
ATTTGGGATTTTTTTAGCATTCAGTTCTTAAGGAGACGGTTAGGGGGGGG
GGGGCACAGTATACTTTTGATCCAGGGGCTCAGTGACGAGCACGATTTGA
TCGATTTTGGAATGCACATTTTTTTGGGTACATATGCGAAAACCGACTGC
ACGAACTCTCCCAAAAGCACCACTTTTCCAATTCGGCTCTTAGCGTCCCG
CTGCAAGATCCCTCTACCCATTCCAACGCAATAG
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