mRNA_L-elsbetiae_contig172.4784.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig172.4784.1
Unique NamemRNA_L-elsbetiae_contig172.4784.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig172.4784.1 vs. uniprot
Match: D8LNX2_ECTSI (Protein phosphatase 2C containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNX2_ECTSI)

HSP 1 Score: 488 bits (1257), Expect = 1.490e-173
Identity = 240/264 (90.91%), Postives = 249/264 (94.32%), Query Frame = 1
Query:    1 MKEDLAGLGLRLFVVLDGHGELGHLVSRRCASKIPNLVVESTFGVARATLRMADDLRSCPVDCSSSGATCVLTTIQDGKISVANLGDSKCVLGTLVNGHVCAVALSDDHKPDRPDERQRILAIGGQVGSRHLVVGSSPSGPIRIPMGPARVWYRCRGEIMGLAMSRSLGDDIAHQAGVSSEPEVMEHDIGPGDQFLILATDGVWDVTEIGQAVQIVQGYASRCRGDSWDPQGAASLLAHSARKRWEGLSAVVDDITALVVRLNV 792
            MKEDL GLG+RLFVVLDGHGELGHLVSRRC++K+PNLVV+S   VARATLRMADDLRSCPVDC+SSGATCVLTTI+DGKISVANLGDSKCVL  LVNG VCAV LS DHKPDRPDERQRILAIGGQVGSRHLVVGS+PSGPIRIPMGPARVWYRCRGEIMGLAMSRSLGDDIAHQAGVSSEPEV EH I   DQFLILATDGVWDVTEIGQAVQIVQGYASRCRG+SWDPQGAASLLAHSARKRWEGLSAVVDDITALVVRL V
Sbjct:   18 MKEDLGGLGVRLFVVLDGHGELGHLVSRRCSAKLPNLVVDSNLCVARATLRMADDLRSCPVDCASSGATCVLTTIRDGKISVANLGDSKCVLARLVNGQVCAVPLSHDHKPDRPDERQRILAIGGQVGSRHLVVGSNPSGPIRIPMGPARVWYRCRGEIMGLAMSRSLGDDIAHQAGVSSEPEVKEHQIDANDQFLILATDGVWDVTEIGQAVQIVQGYASRCRGNSWDPQGAASLLAHSARKRWEGLSAVVDDITALVVRLTV 281          
BLAST of mRNA_L-elsbetiae_contig172.4784.1 vs. uniprot
Match: A0A835YTT3_9STRA (Phosphatase 2C-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTT3_9STRA)

HSP 1 Score: 301 bits (771), Expect = 1.430e-98
Identity = 161/282 (57.09%), Postives = 192/282 (68.09%), Query Frame = 1
Query:   10 DLAGLGLRLFVVLDGHGELGHLVSRRCASKIPNLVVESTFGVARATLRMADDLRS-CPVDCSSSGATCVLTTIQD-GKISVANLGDSKCVLGTLVNG-------------------HVCAVALSDDHKPDRPDERQRILAIGGQVGSRHLVVGSSPSGPIRIPMGPARVWYRCRGEIMGLAMSRSLGDDIAHQAGVSSEPEVMEH--DIGPGDQFLILATDGVWDVTEIGQAVQIVQGYASRCRGDSWDPQGAASLLAHSARKRWEGLSAVVDDITALVVRL 786
            D  G  LR+F VLDGHGE GHLV+RRC  ++P L+  +    ARA + + +DL S   VDC  SGATCV+ TI   G ++VANLGDS+CVLG    G                    VCAV L+ DHKPDRPDER RI A GGQVGSR L+VGS P+GPIRIPMGPARVWY+ RGE MGLAMSRS+GD IAH AGVS++PEV+EH  D   GD FL+LA+DGVWDV +   AV IV   A+   G  WDP+ AA     +ARKRW+GLS ++DDITALVV+L
Sbjct:   74 DGGGDRLRVFAVLDGHGEAGHLVTRRCRERLPQLLRAARGDAARACVALHEDLASGVHVDCQCSGATCVVVTISARGAVTVANLGDSRCVLGRWECGGXXXXXXXXXXXMVGRAQRQVCAVPLTTDHKPDRPDERARIQAAGGQVGSRQLIVGSGPAGPIRIPMGPARVWYQVRGETMGLAMSRSIGDVIAHAAGVSAQPEVVEHCLDRDAGDAFLVLASDGVWDVLDAQAAVHIVAACAAAAGGAEWDPREAAXXXXXAARKRWDGLSPMIDDITALVVKL 355          
BLAST of mRNA_L-elsbetiae_contig172.4784.1 vs. uniprot
Match: A0A7S4D964_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D964_HETAK)

HSP 1 Score: 287 bits (735), Expect = 9.520e-94
Identity = 140/253 (55.34%), Postives = 183/253 (72.33%), Query Frame = 1
Query:   34 LFVVLDGHGELGHLVSRRCASKIPNLVVESTFGVARATLRMADDL-RSCPVDCSSSGATCVLTTIQDGKISVANLGDSKCVLGTLVNGHVCAVALSDDHKPDRPDERQRILAIGGQVGSRHLVVGSSPSGPIRIPMGPARVWYRCRGEIMGLAMSRSLGDDIAHQAGVSSEPEVMEHDIGPGDQFLILATDGVWDVTEIGQAVQIVQGYASRCRGDSWDPQGAASLLAHSARKRWEGLSAVVDDITALVVRLN 789
            +F VLDGHG+ GHLVS +C  ++P L  E+   ++R  L M  +L +S  +D   SGATCV+  ++  +++V NLGDSK VLG  VNG      L++DHKPDRPDERQRIL  GG+VG R LVVG+ P+GP+R+PMGP R+WY+ RGE MGLAMSRSLGD I H  GVS++PE+ EH +   D FL+L +DG+WDVT++ QAVQIVQG  ++     WDP+ AA  LA SAR+RWE +S +VDDITA+VV+L 
Sbjct:   59 MFCVLDGHGQQGHLVSTQCRERLPQLYRETGNDLSRTCLAMQAELEKSTAMDVKCSGATCVICVVEGRRLTVGNLGDSKAVLGRRVNGVTLPHPLTNDHKPDRPDERQRILQAGGKVGCRQLVVGNGPNGPVRLPMGPMRIWYQVRGETMGLAMSRSLGDGIVHALGVSADPELTEHLLDGEDLFLLLGSDGIWDVTDLNQAVQIVQGVVNK-NPHGWDPREAAEELAVSARRRWESMSQMVDDITAIVVKLQ 310          
BLAST of mRNA_L-elsbetiae_contig172.4784.1 vs. uniprot
Match: A0A7S2WTT9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WTT9_9STRA)

HSP 1 Score: 271 bits (692), Expect = 1.380e-85
Identity = 136/257 (52.92%), Postives = 172/257 (66.93%), Query Frame = 1
Query:   28 LRLFVVLDGHGELGHLVSRRCASKIPNLVVESTFGVARATLRMADDLRSCPVDCSSSGATCVLTTIQDGKISVANLGDSKCVLGTLVNGHVCAVALSDDHKPDRPDERQRILAIGGQVGSRHLVVGSSPSGPIRIPMGPARVWYRCRGEIMGLAMSRSLGDDIAHQAGVSSEPEVMEHDIGPGDQFLILATDGVWDVTEIGQAVQIVQGYASRCRGDS---WDPQGAASLLAHSARKRWEGLSAVVDDITALVVRLN 789
            L  + V DGHGE GHLVSR    ++  + +E +   +RA  +M  +L    VD   SGATCV+  ++   I V N GDS+ VLG   NG + A+ L+ DHKPDRPDER+R++  GGQVGSR LVVG + +GP+ +P+GP RVWY+ RGE MGLAMSRSLGD IAH  GVSSEPEV EH +   D F+ILA+DG+WDV E  QAVQIV  + +R        WD   AA +L  +AR+RWE LS +VDDITA+VV L 
Sbjct:  176 LHAWGVFDGHGEFGHLVSRIIRERLGKIWLECSQNFSRAFWQMQSELDKSSVDARCSGATCVMVVLRGNTIQVGNCGDSRAVLGRRSNGTISALQLTSDHKPDRPDERRRVMQAGGQVGSRQLVVGHNANGPVTLPLGPPRVWYQIRGETMGLAMSRSLGDGIAHSNGVSSEPEVTEHAVSSTDVFVILASDGIWDVIETNQAVQIVGNHFARATASGSTQWDVVDAAMVLTTTARRRWESLSPMVDDITAVVVDLR 432          
BLAST of mRNA_L-elsbetiae_contig172.4784.1 vs. uniprot
Match: A0A7S3ZZR6_9STRA (Hypothetical protein n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZZR6_9STRA)

HSP 1 Score: 264 bits (674), Expect = 7.250e-83
Identity = 135/256 (52.73%), Postives = 172/256 (67.19%), Query Frame = 1
Query:   31 RLFVVLDGHGELGHLVSRRCASKIPNLVVESTFGVARATLRMADDLRSCPVDCSSSGATCVLTTIQDGKISVANLGDSKCVLGTLVNGHVCAVALSDDHKPDRPDERQRILAIGGQVGSRHLVVGSSPSGPIRIPMGPARVWYR---CRGEIMGLAMSRSLGDDIAHQAGVSSEPEVMEHDIGPGDQFLILATDGVWDVTEIGQAVQIVQGYASRCRGDSWDPQGAASLLAHSARKRWEGLSAVVDDITALVVRLN 789
            R + VLDGHGE+GHLVS+RC+ ++    V+S   ++ A   M +DL  C +D   SGATCV   + D  + VAN+GDS+ VLG L   ++CA  L+ DHKPDR DE+ RI+A GGQV  R LVVG S +GPI +P+GP RVWYR     G+ MGLAMSRS GD IAH  GVS EPE+ ++++   D+FLI ATDGVWDV +  QAV+IV     R   + WDP  AA  L  SAR RW+ LS ++DDITALVV L+
Sbjct:  158 RCYGVLDGHGEIGHLVSKRCSQQLCEHFVKSQLDMSLAFRLMQEDLSQCELDIKCSGATCVFVHLHDSYLRVANIGDSRGVLGHLDGANICATPLTSDHKPDRHDEQIRIVACGGQVSCRQLVVGHSSNGPITLPLGPPRVWYRRNSSHGDTMGLAMSRSFGDAIAHGLGVSCEPEITQYNLDLADKFLICATDGVWDVIDNAQAVKIVHTLYER--SNDWDPLEAAHTLCISARNRWQSLSPMIDDITALVVDLH 411          
BLAST of mRNA_L-elsbetiae_contig172.4784.1 vs. uniprot
Match: A0A482S1K4_9ARCH (Protein serine/threonine phosphatase 2C family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S1K4_9ARCH)

HSP 1 Score: 258 bits (658), Expect = 1.840e-80
Identity = 126/261 (48.28%), Postives = 175/261 (67.05%), Query Frame = 1
Query:   10 DLAGLGLRLFVVLDGHGELGHLVSRRCASKIPNLVVESTFGVARATLRMADDLRSCPVDCSSSGATCVLTTIQDGKISVANLGDSKCVLGTL-VNGHVCAVALSDDHKPDRPDERQRILAIGGQVGSRHLVVGSSPSGPIRIPMGPARVWYRCRGEIMGLAMSRSLGDDIAHQAGVSSEPEVMEHDIGPGDQFLILATDGVWDVTEIGQAVQIVQGYASRCRGDSWDPQGAASLLAHSARKRWEGLSAVVDDITALVVRLN 789
            +L    LR++ VLDGHGE GH+VS+RC    P+ +  + + V  A   M +DL S  +D   SGATCV+  + + +++V N GDS+ VLG    +G + A  LS+DHKPD+P+ER+RIL  GG +G R ++V     GP+ +P+GP RVWY+ RGE +GLAMSRSLGD I H+ GV++EPE+ EH I   D+F+ILATDGVWDV +   AVQ+V G ASR    +W    A++ +   AR RWE LS +VDDIT +VV+++
Sbjct:  177 ELPDRDLRVYCVLDGHGEHGHIVSKRCRENFPHFLKSTNWQVEAAFNMMQNDLTSSEIDVRCSGATCVIACVSNNRLTVYNCGDSRAVLGRRSASGAIAAYPLSNDHKPDKPEERKRILGCGGHLGCRQVLVNQGNRGPVSMPVGPCRVWYQHRGETLGLAMSRSLGDSIVHKVGVTAEPELTEHQIDDHDEFIILATDGVWDVVDNNHAVQMVFGVASR--SVNWSVLEASNAVCRFARSRWEKLSPMVDDITCVVVKIH 435          
BLAST of mRNA_L-elsbetiae_contig172.4784.1 vs. uniprot
Match: A0A7S1U9X7_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9X7_9STRA)

HSP 1 Score: 256 bits (653), Expect = 6.390e-78
Identity = 132/284 (46.48%), Postives = 173/284 (60.92%), Query Frame = 1
Query:   34 LFVVLDGHGELGHLVSRRCASKIPNLVVESTFGVARATLRMADDLRSCPVDCSSSGATCVLTTIQDGK--------ISVANLGDSKCVLGTLVNGHVCAVALSDDHKPDRPDERQRILAIGGQVGSRHLVVGSSPSGPIRIPMGPARVWYRCRGEIMGLAMSRSLGDDIAHQAGVSSEPEVMEHDIGPGDQFLILATDGVWDVTEIGQAVQIV------------------------QGYASR-CRGDSWDPQGAASLLAHSARKRWEGLSAVVDDITALVVRL 786
            LF V DGHGE GHLVSR+C  ++P  ++ +   +  A     D  +SC VDCS SGAT V+  I +          + + N GDS+ V+  +VN  +  V L+ DHKPDRPDER+RI A+GG+VG+R +VVG  P+G I +P+GPAR+WY CRGE MGLAMSRSLGD IAH+ G S EPE+   ++   D FL+LATDGVWDV +   AV I                          G++S   R   WDP+ AA  +  +AR+RWE LSA+VDDIT +VV+L
Sbjct:  316 LFAVFDGHGEFGHLVSRKCREEMPQRLISNRLDMGAAFDEAQDHFKSCEVDCSCSGATAVVIIIDNATRGRGGSSTLRIGNCGDSRAVVARVVNNTITGVTLTKDHKPDRPDERRRITAMGGKVGTRQVVVGHGPNGAITMPVGPARIWYNCRGETMGLAMSRSLGDLIAHRVGGSHEPEMTMRNLQEEDMFLLLATDGVWDVLDANAAVDIAFEVMMEAREEAGLGPKRVPMGGAAAGFSSEEWRSIPWDPEVAAKRICTTARRRWENLSAMVDDITCVVVKL 599          
BLAST of mRNA_L-elsbetiae_contig172.4784.1 vs. uniprot
Match: A0A7S2CMF9_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CMF9_9STRA)

HSP 1 Score: 239 bits (610), Expect = 6.110e-73
Identity = 121/255 (47.45%), Postives = 166/255 (65.10%), Query Frame = 1
Query:   37 FVVLDGHGELGHLVSRRCASKIPNLVVESTFGVARATLRMADDLRSCPVDCSSSGATCVLTTIQDGKISVANLGDSKCVLGTLVNG--HVCAVALSDDHKPDRPDERQRILAIGGQVGSRHLVVGSSPSGPIRIPMGPARVWYRCRGEIMGLAMSRSLGDDIAHQAGVSSEPEVMEHDIGPGDQFLILATDGVWDVTEIGQAVQIVQGYASRC-RGDS-WDPQGAASLLAHSARKRWEGLSAVVDDITALVVRLN 789
            ++V DGHG+ GHLVS+    K+    +++ F +    L M   L    VD  SSG+TCV+  + +  + VAN GDS+ VLG +VN    +  + L+DDHKPDRPDER R+   GGQVG R +++    S  +R+P+GPARVWY  RGE  GLAMSRSLGD I H  GVS EPEV +  +   ++F+I+ATDG+WDV      VQIV  + +   R +S W+PQ AA +L  +AR+RWEG+S +VDDITA+V+ L+
Sbjct:  202 WIVFDGHGDRGHLVSKFGREKMGKTWIDNKFRLRETFLSMQQQLNKSSVDVRSSGSTCVMVVLDNDCLKVANCGDSRAVLGKVVNSSSQLATIVLTDDHKPDRPDERMRVEKAGGQVGCRQMLMNRGSS--VRVPLGPARVWYTNRGETTGLAMSRSLGDAIVHTFGVSEEPEVTQRTLDKTERFIIVATDGIWDVLHSSHVVQIVDKHFNEAARSNSPWNPQDAAMVLCLTARRRWEGMSTMVDDITAVVIDLS 454          
BLAST of mRNA_L-elsbetiae_contig172.4784.1 vs. uniprot
Match: A0A7S2XVV9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVV9_9STRA)

HSP 1 Score: 209 bits (532), Expect = 2.660e-63
Identity = 103/178 (57.87%), Postives = 127/178 (71.35%), Query Frame = 1
Query:   37 FVVLDGHGELGHLVSRRCASKIPNLVVESTFGVARATLRMADDLRSCP-VDCSSSGATCVLTTIQDGKISVANLGDSKCVLGTLVNGHVCAVALSDDHKPDRPDERQRILAIGGQVGSRHLVVGSSPSGPIRIPMGPARVWYRCRGEIMGLAMSRSLGDDIAHQAGVSSEPEVMEHDI 567
            + VLDGHG+ GHLVS      +     E    V+RA LRM +DL + P +D   SGATCV+  ++   + V NLGDS+CVL   VNG +  VALS+DHKPDRPDERQRILA GG+VG R LVVG+ PSGP+R+PMGP R+WY+ RGE MGLAMSRSLGD I H  GVS++PE+ EH +
Sbjct:  116 YCVLDGHGQQGHLVSGYIRENLVRHYSECGQDVSRACLRMQEDLDTTPTLDTKCSGATCVIAILRGRSLLVGNLGDSRCVLARRVNGVLSPVALSNDHKPDRPDERQRILAAGGKVGCRQLVVGNGPSGPVRLPMGPMRIWYQVRGETMGLAMSRSLGDSIVHTQGVSADPELKEHQV 293          
BLAST of mRNA_L-elsbetiae_contig172.4784.1 vs. uniprot
Match: A0A7S2NWU1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2NWU1_9STRA)

HSP 1 Score: 189 bits (479), Expect = 2.130e-54
Identity = 98/255 (38.43%), Postives = 147/255 (57.65%), Query Frame = 1
Query:   34 LFVVLDGHGELGHLVSRRCASKIPNLVVESTFGVARATLRMADDLRSCPVDCSSSGATCVLTTIQDGK-ISVANLGDSKCV-LGTLVNGHVCAVALSDDHKPDRPDERQRILAIGGQVGSRHLVVGSSPSGPIRIPMGPARVWYRCRGEIMGLAMSRSLGDDIAHQAGVSSEPEVMEHDIGPGDQFLILATDGVWDVTEIGQAVQIVQGYASRCRGDSWDPQGAASLLAHSARKRWEGLSAV-VDDITALVVRLN 789
            +++V DGHG  GH+VS+ C + +P ++ E+ +   RA   +  DL S  +D   SG TCV   ++  + I V N+GDS+ + L    N  + A+ LS DHKP + DER+RIL  GG++ S+H   G            P+RVW+      MGLAMSRS+GD+ AH+ GVS EP++  H I P D  ++LA+DG+WDV    +   ++Q   +    D W+ + AA  L   AR RWE +S   +DD+T LV+++ 
Sbjct:  123 VYMVFDGHGRFGHVVSKHCKAVLPKILAETGYDQERAISVLQSDLESSAIDIECSGCTCVTAIVKQNRTIEVGNVGDSRAIILQRSPNNTLKALPLSIDHKPSQLDERKRILETGGRIASKHCSAG------------PSRVWFEYNNTTMGLAMSRSVGDEFAHRVGVSHEPQIFHHKIEPQDTCIVLASDGLWDVYSNDEVAHLIQTCINGNYAD-WNAKIAAVFLTKMARMRWEHISTEHIDDVTCLVIKIE 364          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig172.4784.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNX2_ECTSI1.490e-17390.91Protein phosphatase 2C containing protein n=1 Tax=... [more]
A0A835YTT3_9STRA1.430e-9857.09Phosphatase 2C-containing protein n=1 Tax=Tribonem... [more]
A0A7S4D964_HETAK9.520e-9455.34Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S2WTT9_9STRA1.380e-8552.92Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3ZZR6_9STRA7.250e-8352.73Hypothetical protein n=4 Tax=Pelagomonas calceolat... [more]
A0A482S1K4_9ARCH1.840e-8048.28Protein serine/threonine phosphatase 2C family pro... [more]
A0A7S1U9X7_9STRA6.390e-7846.48Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2CMF9_9STRA6.110e-7347.45Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2XVV9_9STRA2.660e-6357.87Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
A0A7S2NWU1_9STRA2.130e-5438.43Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig172contigL-elsbetiae_contig172:37375..40572 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score488.0
Seed ortholog evalue2.7e-135
Seed eggNOG ortholog2880.D8LNX2
KEGG koko:K04403,ko:K14803,ko:K17500
KEGG Pathwayko04010,ko04064,ko04380,ko04620,ko04621,ko04668,ko05140,ko05145,ko05168,ko05169,map04010,map04064,map04380,map04620,map04621,map04668,map05140,map05145,map05168,map05169
KEGG ModuleM00686
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein serine/threonine phosphatase activity
EggNOG OGsCOG0631@1,KOG0698@2759
EC3.1.3.16
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01009,ko03009
Ec32 ortholog descriptionProtein phosphatase 2C (PP2C)-like domain
Ec32 orthologEc-08_005490.1
Exons6
Model size798
Cds size798
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig172.4784.1prot_L-elsbetiae_contig172.4784.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig172 37375..40572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815716.5972903-CDS-L-elsbetiae_contig172:37374..374371622815716.5972903-CDS-L-elsbetiae_contig172:37374..37437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig172 37375..37437 +
1691683056.303832-CDS-L-elsbetiae_contig172:37374..374371691683056.303832-CDS-L-elsbetiae_contig172:37374..37437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig172 37375..37437 +
1622815716.6089704-CDS-L-elsbetiae_contig172:37944..381181622815716.6089704-CDS-L-elsbetiae_contig172:37944..38118Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig172 37945..38118 +
1691683056.314566-CDS-L-elsbetiae_contig172:37944..381181691683056.314566-CDS-L-elsbetiae_contig172:37944..38118Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig172 37945..38118 +
1622815716.6195855-CDS-L-elsbetiae_contig172:38677..388181622815716.6195855-CDS-L-elsbetiae_contig172:38677..38818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig172 38678..38818 +
1691683056.3231056-CDS-L-elsbetiae_contig172:38677..388181691683056.3231056-CDS-L-elsbetiae_contig172:38677..38818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig172 38678..38818 +
1622815716.632356-CDS-L-elsbetiae_contig172:39288..394921622815716.632356-CDS-L-elsbetiae_contig172:39288..39492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig172 39289..39492 +
1691683056.33327-CDS-L-elsbetiae_contig172:39288..394921691683056.33327-CDS-L-elsbetiae_contig172:39288..39492Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig172 39289..39492 +
1622815716.644094-CDS-L-elsbetiae_contig172:39881..399501622815716.644094-CDS-L-elsbetiae_contig172:39881..39950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig172 39882..39950 +
1691683056.3592176-CDS-L-elsbetiae_contig172:39881..399501691683056.3592176-CDS-L-elsbetiae_contig172:39881..39950Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig172 39882..39950 +
1622815716.6566541-CDS-L-elsbetiae_contig172:40425..405721622815716.6566541-CDS-L-elsbetiae_contig172:40425..40572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig172 40426..40572 +
1691683056.3700683-CDS-L-elsbetiae_contig172:40425..405721691683056.3700683-CDS-L-elsbetiae_contig172:40425..40572Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig172 40426..40572 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig172.4784.1

>prot_L-elsbetiae_contig172.4784.1 ID=prot_L-elsbetiae_contig172.4784.1|Name=mRNA_L-elsbetiae_contig172.4784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=266bp
MKEDLAGLGLRLFVVLDGHGELGHLVSRRCASKIPNLVVESTFGVARATL
RMADDLRSCPVDCSSSGATCVLTTIQDGKISVANLGDSKCVLGTLVNGHV
CAVALSDDHKPDRPDERQRILAIGGQVGSRHLVVGSSPSGPIRIPMGPAR
VWYRCRGEIMGLAMSRSLGDDIAHQAGVSSEPEVMEHDIGPGDQFLILAT
DGVWDVTEIGQAVQIVQGYASRCRGDSWDPQGAASLLAHSARKRWEGLSA
VVDDITALVVRLNVS*
back to top

mRNA from alignment at L-elsbetiae_contig172:37375..40572+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig172.4784.1 ID=mRNA_L-elsbetiae_contig172.4784.1|Name=mRNA_L-elsbetiae_contig172.4784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3198bp|location=Sequence derived from alignment at L-elsbetiae_contig172:37375..40572+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAGAAGACCTTGCAGGCTTGGGTCTTCGCCTCTTCGTGGTGCTAGA TGGCCATGGCGAGGTATGCTGCTTGTCCTGCAGCCGCTCTGCTGGAGCTA CTTGCGTTGCTGATGTGTTCTCACGAAGCATAGTTAGTTCTGGTCACCAG CCCTGCATCAACCATATTCGTGCTGTGTAGTGGTAGTTTTACCTTGCAGG AAGCAGGTTCTCGTGGGCGTAGCGTAGATGTCATCACAAGGTAGATGGCT CCACCCACGCCGAGGAGAATAAATCACCTCCAGCCTGAAAATGAAAATAA CAGAAAGCGACGCCACAAGGTGCTATGCACCGTACCGCAAGCTTTCGGGA GCGAGAAAAGTACGATAATTTCAGTTGTGTCTGTGTATGTACGTATGTAT ATCTTTCCTTACTGCGTGGATACGTGCCCCTGTTCAACAATTCCCCTGCG CGGTGAAGACCACAAATATGCTATTTTACAGTTGTTTTTCGGCAAGTGTT GACTTCGAACTGACCGTCTACTGCCTACTCGTTGCTGCTAAATACCCTTG CCCCGACTTGATGGATGCAGTTGGGCCACCTCGTGAGCCGGAGATGCGCC TCAAAGATTCCAAACCTAGTGGTAGAGTCCACCTTTGGTGTGGCGAGAGC CACGTTAAGGATGGCCGACGACCTGCGAAGCTGTCCGGTAGACTGCTCGT CGAGCGGGGCCACGTGCGTGCTTACGACGATACAGGATGGAAAGGTGACT ATTGGAGGCGTGGTGTTGGCACAGACTGCACTCGAAGGCCGTTCAATGCG TACAGTAGTAACACCGGTGCTACCTTATACCGGATGCGCTAAATGATACT GGTAGGTGCTACACTCACCATACCGCATATGGTGTTCTTAGTCATTTTCT CTCAAACTCGCACCCATTACCGTGCTCGTGTATGTTTCTGCAATGCCCTC AGTCTCGTTGTACATACACGTTCTTCAGGCAGTGTGCTCAGTGCGGCCTG GCACTACCTTGTTCCCCCCCCTTCTCTGTCTGTTTCACTCGGTTTCTGAT TTCAAGCATACCTTCTGTTTTCCGTGGCGACAACACTTTTCTCCATCGCG ACGTGTCATCCCGCTTAGCTTTTCTGAAATATATGTGTTCGGGCTGATCT ACGTTTCTGCGTCGACGACACTACTGCCTGACATAATGCACTTGAAAGGG TACCCGCATCGTCTGCACGGCTACTACCATATGGACATGTCTTTGCCGAA TAACGCGAGCCTCTCTGTGCCTCCCCCCCCCCCCTGGCTGCCCCCTTCGG AAGATCTCCGTGGCCAACCTGGGAGATTCCAAGTGTGTCTTGGGGACGCT GGTGAACGGCCACGTTTGCGCCGTGGCGCTCTCGGATGACCACAAGCCGG ATCGCCCGGACGAAAGGCAACGGATACTCGCCATAGGGGGGCAGGTACAT CGCAATGAAGACCGCGATACTACACAAGCCGTGTTTGCCAGCCGATTATC ATGGCCTTGACCTATACACAATCACCGCCAAGCTTTGACACGACACGCTA CGTATGTATGTACATGTGAACGTCGTGTTTTGGAAAACTGAAACTTCAAA AAACAAAAAAAGATGCCACTACGACTGCTGTTAATGATCAAACAAGCGGA AAGCGGGAGCTCGTCTGCGCGAGGCAGGCGTTGAAAGTTGTGCGGCCCTA GGGAGTCAACAGCATTTCACAAAACGCCGACGATGGAAAACATTCCCGTT CCACCATATGACCCCATAAATTATCCGAAAACATCCACGTTGCACAACGA TCACATACAAACTATCCGACGCCGCGGGCTTGGGCTTAGCTATCTACTGC CGGCTTTGCTCTGCATCTTGATCCTCTGCATCTTGATCCTCTGCATCTTG ATCCTGGCACACAGGTGGGATCTCGACATCTCGTGGTCGGGTCTAGCCCG TCCGGTCCCATCCGCATTCCCATGGGACCGGCAAGAGTGTGGTATCGCTG TCGGGGGGAGATAATGGGGCTGGCCATGAGTCGCAGCCTGGGGGACGACA TCGCGCACCAGGCGGGGGTGTCTTCGGAGCCAGAGGTCATGGAGCATGAC ATCGGTCCCGGCGATCAGGTGCGCCAGGGGTGGTGATGGGGCCTAGGGGG GGGGGCGTCAGAGCAGTCGATGGCGGGAAGGGAGTGGACCTCGCCGTTCG CCGTTTCATTCGTTCCTCGTCCGAAATAACGTCTTTTTCGCGCACACCTC TCTCCTCTCATTCTCCCGACGAAAGACGATAACACACAGGAGTTTGACGC GCGCCTTAAACCCAAGGAGAAGTCGCATTTCTTGCTTAGGGATACGCACC ACTATTATATACATACTCGAAGCCACTGCTGTTTTTATGGTTTTATTTTT CGATCTTTTCAAGAAGCACAAACGCTCCACGCAAGTGTTCGCGTGACATG CGTGAAACACCAATCAACCAGTGCAGATTTATTTCGTCCTTCCCTCTCTT GCTTTAGTTCCTGATCCTGGCGACGGACGGGGTGTGGGATGTCACGGAGA TCGGACAAGCCGTCCAAATAGTACAGGTGCGGGATAAAATGTCCCTGTAT TGTACCAACCTCGTTGCCCTCCCTGCTTGCGTACCGGGTTAATCCTGTCT TGGAGTAGCGAAGCTGCCGGGCGCGATGCAAAGGAGAAAGCAAAGGAGGG AGTCGTTTCATCGATCAACAGCATCCTTTAGACTTAGTGTCTTTATGTTT AAATCGCACACTGCTTTTATTCCAACAGGAAACACCGGCCTAAGCGACGG CACCCGCCAGCCCAGAGAAACTCTATGTAGTCGGCGGGGAGCATGTGACC CCGGTTGGGTCGTCTAGTCGTAGTGGAGGAAGGGGGCCAGTGGGGCACAC GACGAATAAGCCAATAATGGGAGGAAAAACAAAAATGTAGATATCTCGTT CTGTTTTACTTTTGGGCCCGTAGCGTTTTCGGCACAATATGATAATCTGC CCGTTTTTTAAGCACCCCCGCTCCGGTTCCGCCCTCCCGCACGTGCGACA GGGGTATGCATCACGATGCCGAGGGGATTCGTGGGACCCCCAAGGGGCGG CGTCTCTCCTGGCCCACTCGGCGCGAAAGCGCTGGGAAGGGTTGTCGGCC GTGGTGGACGACATCACGGCCCTAGTGGTACGGCTGAACGTCTCCTGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig172:37375..40572+

>mRNA_L-elsbetiae_contig172.4784.1 ID=mRNA_L-elsbetiae_contig172.4784.1|Name=mRNA_L-elsbetiae_contig172.4784.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1596bp|location=Sequence derived from alignment at L-elsbetiae_contig172:37375..40572+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAGAAGACCTTGCAGGCTTGGGTCTTCGCCTCTTCGTGGTGCTAGA
TGGCCATGGCGAGATGAAAGAAGACCTTGCAGGCTTGGGTCTTCGCCTCT
TCGTGGTGCTAGATGGCCATGGCGAGTTGGGCCACCTCGTGAGCCGGAGA
TGCGCCTCAAAGATTCCAAACCTAGTGGTAGAGTCCACCTTTGGTGTGGC
GAGAGCCACGTTAAGGATGGCCGACGACCTGCGAAGCTGTCCGGTAGACT
GCTCGTCGAGCGGGGCCACGTGCGTGCTTACGACGATACAGGATGGAAAG
TTGGGCCACCTCGTGAGCCGGAGATGCGCCTCAAAGATTCCAAACCTAGT
GGTAGAGTCCACCTTTGGTGTGGCGAGAGCCACGTTAAGGATGGCCGACG
ACCTGCGAAGCTGTCCGGTAGACTGCTCGTCGAGCGGGGCCACGTGCGTG
CTTACGACGATACAGGATGGAAAGATCTCCGTGGCCAACCTGGGAGATTC
CAAGTGTGTCTTGGGGACGCTGGTGAACGGCCACGTTTGCGCCGTGGCGC
TCTCGGATGACCACAAGCCGGATCGCCCGGACGAAAGGCAACGGATACTC
GCCATAGGGGGGCAGATCTCCGTGGCCAACCTGGGAGATTCCAAGTGTGT
CTTGGGGACGCTGGTGAACGGCCACGTTTGCGCCGTGGCGCTCTCGGATG
ACCACAAGCCGGATCGCCCGGACGAAAGGCAACGGATACTCGCCATAGGG
GGGCAGGTGGGATCTCGACATCTCGTGGTCGGGTCTAGCCCGTCCGGTCC
CATCCGCATTCCCATGGGACCGGCAAGAGTGTGGTATCGCTGTCGGGGGG
AGATAATGGGGCTGGCCATGAGTCGCAGCCTGGGGGACGACATCGCGCAC
CAGGCGGGGGTGTCTTCGGAGCCAGAGGTCATGGAGCATGACATCGGTCC
CGGCGATCAGGTGGGATCTCGACATCTCGTGGTCGGGTCTAGCCCGTCCG
GTCCCATCCGCATTCCCATGGGACCGGCAAGAGTGTGGTATCGCTGTCGG
GGGGAGATAATGGGGCTGGCCATGAGTCGCAGCCTGGGGGACGACATCGC
GCACCAGGCGGGGGTGTCTTCGGAGCCAGAGGTCATGGAGCATGACATCG
GTCCCGGCGATCAGTTCCTGATCCTGGCGACGGACGGGGTGTGGGATGTC
ACGGAGATCGGACAAGCCGTCCAAATAGTACAGTTCCTGATCCTGGCGAC
GGACGGGGTGTGGGATGTCACGGAGATCGGACAAGCCGTCCAAATAGTAC
AGGGGTATGCATCACGATGCCGAGGGGATTCGTGGGACCCCCAAGGGGCG
GCGTCTCTCCTGGCCCACTCGGCGCGAAAGCGCTGGGAAGGGTTGTCGGC
CGTGGTGGACGACATCACGGCCCTAGTGGTACGGCTGAACGTCTCCTGAG
GGTATGCATCACGATGCCGAGGGGATTCGTGGGACCCCCAAGGGGCGGCG
TCTCTCCTGGCCCACTCGGCGCGAAAGCGCTGGGAAGGGTTGTCGGCCGT
GGTGGACGACATCACGGCCCTAGTGGTACGGCTGAACGTCTCCTGA
back to top