mRNA_L-elsbetiae_contig172.4782.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig172.4782.1
Unique NamemRNA_L-elsbetiae_contig172.4782.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig172.4782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig172contigL-elsbetiae_contig172:1437..2468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size1032
Cds size552
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig172.4782.1prot_L-elsbetiae_contig172.4782.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig172 1749..2300 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815716.1144814-UTR-L-elsbetiae_contig172:1436..17481622815716.1144814-UTR-L-elsbetiae_contig172:1436..1748Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig172 1437..1748 +
1691683055.9293575-UTR-L-elsbetiae_contig172:1436..17481691683055.9293575-UTR-L-elsbetiae_contig172:1436..1748Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig172 1437..1748 +
1622815716.1426125-UTR-L-elsbetiae_contig172:2300..24681622815716.1426125-UTR-L-elsbetiae_contig172:2300..2468Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig172 2301..2468 +
1691683055.9451234-UTR-L-elsbetiae_contig172:2300..24681691683055.9451234-UTR-L-elsbetiae_contig172:2300..2468Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig172 2301..2468 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815716.1277523-CDS-L-elsbetiae_contig172:1748..23001622815716.1277523-CDS-L-elsbetiae_contig172:1748..2300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig172 1749..2300 +
1691683055.937433-CDS-L-elsbetiae_contig172:1748..23001691683055.937433-CDS-L-elsbetiae_contig172:1748..2300Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig172 1749..2300 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig172.4782.1

>prot_L-elsbetiae_contig172.4782.1 ID=prot_L-elsbetiae_contig172.4782.1|Name=mRNA_L-elsbetiae_contig172.4782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=184bp
MCHASGSSMCHAFHFVRAGRVCASGSWGADSRFMWVWCWFSTIALMMVKT
LELFYSMGVFTIRVFFWRVILALRNITAFAVSRILGGGCVRLIMIDSRTQ
QHCLFFGFYMACGLLQLGGCCHIDIILEFFAMMTEKGCLCGSIFLVRSWD
TTAGGLFAYLSFISFLEQQEKRRFACVGDLFRF*
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mRNA from alignment at L-elsbetiae_contig172:1437..2468+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig172.4782.1 ID=mRNA_L-elsbetiae_contig172.4782.1|Name=mRNA_L-elsbetiae_contig172.4782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1032bp|location=Sequence derived from alignment at L-elsbetiae_contig172:1437..2468+ (Laminarionema elsbetiae ELsaHSoW15)
AAAAGAAGAAAAAGCCCCAGTGTTCACCTCCTCCTGTGTGACCCCGGTTG
GTTCTAGTTGTACAGACAAATGCACTGCAAAGTGTAGTACCTCTAAGTAC
ACCACAAGGTGTAGAGTACACGTCTCCACTTGGGGGGACTGTCGCCAGAA
TATATGGGAAGGACACACACACACATACATGTGTGCATACTGGGCATGTC
TACGCGCAACGATGTCCACTTCGTCCGCCCAATGCCGCCGGAATAACGGT
ATTCCTTGCATGTTTTGTGTTTCTCTTGGGTATTTTGTTTTTCTGGTGGC
ATTTCTTGGGTTATGTGCCATGCTTCTGGTAGCAGTATGTGCCATGCATT
TCATTTCGTTCGTGCTGGCCGTGTTTGTGCCTCTGGAAGTTGGGGGGCTG
ATAGCCGTTTCATGTGGGTTTGGTGTTGGTTTTCTACGATCGCGCTGATG
ATGGTCAAAACGCTCGAATTATTTTACAGTATGGGGGTATTTACGATCCG
TGTTTTCTTCTGGAGGGTTATTCTGGCTTTGAGGAACATTACTGCTTTTG
CTGTTTCAAGAATCCTGGGGGGGGGTTGTGTGCGCTTAATCATGATTGAT
TCTAGAACGCAGCAGCATTGTTTGTTTTTCGGTTTTTATATGGCTTGTGG
ATTGCTGCAGCTGGGGGGCTGTTGTCATATTGATATTATCTTGGAGTTTT
TTGCCATGATGACTGAAAAAGGTTGTTTGTGTGGCTCTATATTCCTTGTG
CGTTCTTGGGATACAACAGCTGGGGGGCTGTTTGCATATTTAAGTTTTAT
ATCGTTTCTTGAACAACAGGAGAAACGCCGGTTCGCGTGTGTGGGCGATC
TGTTTAGATTTTAAAAGTTCTTGGATACTGCATTAGAAGGAAGGGTTTGA
CATGTCTTGGTGGCTAGTAATATTGAGGGAAGTCCCAGAGCTTCCTGAAT
GGTCTCCTAGACTGGTCAATAAGTTCACATTTGGGTTTTGTTTGAGGTTT
GTTTTCTAGCACATTGAGGTATTTTCTGGGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig172:1437..2468+

>mRNA_L-elsbetiae_contig172.4782.1 ID=mRNA_L-elsbetiae_contig172.4782.1|Name=mRNA_L-elsbetiae_contig172.4782.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1104bp|location=Sequence derived from alignment at L-elsbetiae_contig172:1437..2468+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCCATGCTTCTGGTAGCAGTATGTGCCATGCATTTCATTTCGTTCG
TGCTGGCCGTGTTTGTGCCTCTGGAAGTTGGGGGGCTGATAGCCGTTTCA
TGTGGGTTTGGTGTTGGTTTTCTACGATCGCGCTGATGATGGTCAAAACG
CTCGAATTATTTTACAGTATGGGGGTATTTACGATCCGTGTTTTCTTCTG
GAGGGTTATTCTGGCTTTGAGGAACATTACTGCTTTTGCTGTTTCAAGAA
TCCTGGGGGGGGGTTGTGTGCGCTTAATCATGATTGATTCTAGAACGCAG
CAGCATTGTTTGTTTTTCGGTTTTTATATGGCTTGTGGATTGCTGCAGCT
GGGGGGCTGTTGTCATATTGATATTATCTTGGAGTTTTTTGCCATGATGA
CTGAAAAAGGTTGTTTGTGTGGCTCTATATTCCTTGTGCGTTCTTGGGAT
ACAACAGCTGGGGGGCTGTTTGCATATTTAAGTTTTATATCGTTTCTTGA
ACAACAGGAGAAACGCCGGTTCGCGTGTGTGGGCGATCTGTTTAGATTTT
AAATGTGCCATGCTTCTGGTAGCAGTATGTGCCATGCATTTCATTTCGTT
CGTGCTGGCCGTGTTTGTGCCTCTGGAAGTTGGGGGGCTGATAGCCGTTT
CATGTGGGTTTGGTGTTGGTTTTCTACGATCGCGCTGATGATGGTCAAAA
CGCTCGAATTATTTTACAGTATGGGGGTATTTACGATCCGTGTTTTCTTC
TGGAGGGTTATTCTGGCTTTGAGGAACATTACTGCTTTTGCTGTTTCAAG
AATCCTGGGGGGGGGTTGTGTGCGCTTAATCATGATTGATTCTAGAACGC
AGCAGCATTGTTTGTTTTTCGGTTTTTATATGGCTTGTGGATTGCTGCAG
CTGGGGGGCTGTTGTCATATTGATATTATCTTGGAGTTTTTTGCCATGAT
GACTGAAAAAGGTTGTTTGTGTGGCTCTATATTCCTTGTGCGTTCTTGGG
ATACAACAGCTGGGGGGCTGTTTGCATATTTAAGTTTTATATCGTTTCTT
GAACAACAGGAGAAACGCCGGTTCGCGTGTGTGGGCGATCTGTTTAGATT
TTAA
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