mRNA_L-elsbetiae_contig17183.4779.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17183.4779.1
Unique NamemRNA_L-elsbetiae_contig17183.4779.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17183.4779.1 vs. uniprot
Match: D8LSW3_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW3_ECTSI)

HSP 1 Score: 69.3 bits (168), Expect = 1.970e-10
Identity = 32/41 (78.05%), Postives = 34/41 (82.93%), Query Frame = 2 
Query:  233 FYHHFFFEGTTLGMQLRVATTTILYDKILRLSLGSLGQVRT 355
            F HHFFF G TLGMQLR+ TTTILYDKILRL L SLGQ+ T
Sbjct:   49 FIHHFFFVGYTLGMQLRICTTTILYDKILRLRLSSLGQIST 89
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BLAST of mRNA_L-elsbetiae_contig17183.4779.1 vs. uniprot
Match: D8LSW4_ECTSI (Multidrug resistance-associated protein-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW4_ECTSI)

HSP 1 Score: 61.6 bits (148), Expect = 8.830e-8
Identity = 29/41 (70.73%), Postives = 32/41 (78.05%), Query Frame = 2 
Query:  233 FYHHFFFEGTTLGMQLRVATTTILYDKILRLSLGSLGQVRT 355
            F HHF F G  LGMQLR++TTTILYDKILRL L  LGQ+ T
Sbjct:   96 FLHHFNFVGYMLGMQLRISTTTILYDKILRLRLSLLGQIST 136
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BLAST of mRNA_L-elsbetiae_contig17183.4779.1 vs. uniprot
Match: D8LSW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSW6_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 9.990e-7
Identity = 28/43 (65.12%), Postives = 32/43 (74.42%), Query Frame = 2 
Query:  227 SLFYHHFFFEGTTLGMQLRVATTTILYDKILRLSLGSLGQVRT 355
            S F     F G TLGMQLR++TTT+LYDKILRL L SLGQ+ T
Sbjct:  147 SFFXXXXXFVGWTLGMQLRISTTTVLYDKILRLRLSSLGQIST 189
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17183.4779.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LSW3_ECTSI1.970e-1078.05Multidrug resistance-associated protein-like prote... [more]
D8LSW4_ECTSI8.830e-870.73Multidrug resistance-associated protein-like prote... [more]
D8LSW6_ECTSI9.990e-765.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17183contigL-elsbetiae_contig17183:2047..2599 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score68.9
Seed ortholog evalue1.7e-09
Seed eggNOG ortholog2880.D8LSW3
KEGG koko:K05673
KEGG TC3.A.1.208.7
KEGG Pathwayko01523,ko02010,ko04024,ko04976,map01523,map02010,map04024,map04976
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ATPase activity, coupled to transmembrane movement of substances
EggNOG OGsCOG1132@1,KOG0054@2759
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000
Exons1
Model size553
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17183.4779.1prot_L-elsbetiae_contig17183.4779.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17183 2222..2557 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815715.9436882-UTR-L-elsbetiae_contig17183:2046..22211622815715.9436882-UTR-L-elsbetiae_contig17183:2046..2221Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17183 2047..2221 +
1691683055.844915-UTR-L-elsbetiae_contig17183:2046..22211691683055.844915-UTR-L-elsbetiae_contig17183:2046..2221Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17183 2047..2221 +
1622815715.9649622-UTR-L-elsbetiae_contig17183:2557..25991622815715.9649622-UTR-L-elsbetiae_contig17183:2557..2599Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17183 2558..2599 +
1691683055.8672178-UTR-L-elsbetiae_contig17183:2557..25991691683055.8672178-UTR-L-elsbetiae_contig17183:2557..2599Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17183 2558..2599 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815715.9536781-CDS-L-elsbetiae_contig17183:2221..25571622815715.9536781-CDS-L-elsbetiae_contig17183:2221..2557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17183 2222..2557 +
1691683055.8574216-CDS-L-elsbetiae_contig17183:2221..25571691683055.8574216-CDS-L-elsbetiae_contig17183:2221..2557Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17183 2222..2557 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17183.4779.1

>prot_L-elsbetiae_contig17183.4779.1 ID=prot_L-elsbetiae_contig17183.4779.1|Name=mRNA_L-elsbetiae_contig17183.4779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MALPPPSASIVEQRCRGSLFYHHFFFEGTTLGMQLRVATTTILYDKILRL
SLGSLGQVRTQRTHARTHAILQVHSSAAGGHARVCTAACSYPRFTTRGQT
KQTPGGENELP*
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mRNA from alignment at L-elsbetiae_contig17183:2047..2599+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17183.4779.1 ID=mRNA_L-elsbetiae_contig17183.4779.1|Name=mRNA_L-elsbetiae_contig17183.4779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=553bp|location=Sequence derived from alignment at L-elsbetiae_contig17183:2047..2599+ (Laminarionema elsbetiae ELsaHSoW15)
CCCGAAGAACCGACCTTGAAGTAGAAGTTAGCCTGTGGTCACGACCACCG
GCCGTGAGTTGCTAGATGATCGGAACGGTTTTCAACGCGAAGAAACAACA
AGACAGCAACTGCACATACATATGGCCGAACATAGTCTTTGGGGTACGAA
GCCTTAACCCCCCCCTCTCGCCGCCATGGCGCTTCCTCCCCCTTCCGCAT
CGATTGTCGAACAACGCTGCCGAGGCAGCCTCTTCTACCACCATTTCTTC
TTCGAGGGCACGACGCTGGGCATGCAGTTGAGGGTGGCCACCACGACCAT
CCTCTACGACAAGATCCTCCGCCTTAGCCTCGGCTCCCTGGGTCAGGTAC
GCACGCAACGCACGCACGCACGCACGCACGCAATTTTGCAGGTGCACTCC
TCGGCCGCGGGGGGTCACGCTCGCGTGTGTACAGCAGCGTGCTCGTACCC
ACGATTCACGACTCGTGGACAAACAAAACAAACGCCCGGTGGAGAGAACG
AACTCCCCTGATTGGCCCCGCTCTTTCGAGCGAGCACATTAAGCATGTGT
ACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17183:2047..2599+

>mRNA_L-elsbetiae_contig17183.4779.1 ID=mRNA_L-elsbetiae_contig17183.4779.1|Name=mRNA_L-elsbetiae_contig17183.4779.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig17183:2047..2599+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGCTTCCTCCCCCTTCCGCATCGATTGTCGAACAACGCTGCCGAGG
CAGCCTCTTCTACCACCATTTCTTCTTCGAGGGCACGACGCTGGGCATGC
AGTTGAGGGTGGCCACCACGACCATCCTCTACGACAAGATCCTCCGCCTT
AGCCTCGGCTCCCTGGGTCAGGTACGCACGCAACGCACGCACGCACGCAC
GCACGCAATTTTGCAGGTGCACTCCTCGGCCGCGGGGGGTCACGCTCGCG
TGTGTACAGCAGCGTGCTCGTACCCACGATTCACGACTCGTGGACAAACA
AAACAAACGCCCGGTGGAGAGAACGAACTCCCCTGAATGGCGCTTCCTCC
CCCTTCCGCATCGATTGTCGAACAACGCTGCCGAGGCAGCCTCTTCTACC
ACCATTTCTTCTTCGAGGGCACGACGCTGGGCATGCAGTTGAGGGTGGCC
ACCACGACCATCCTCTACGACAAGATCCTCCGCCTTAGCCTCGGCTCCCT
GGGTCAGGTACGCACGCAACGCACGCACGCACGCACGCACGCAATTTTGC
AGGTGCACTCCTCGGCCGCGGGGGGTCACGCTCGCGTGTGTACAGCAGCG
TGCTCGTACCCACGATTCACGACTCGTGGACAAACAAAACAAACGCCCGG
TGGAGAGAACGAACTCCCCTGA
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