mRNA_L-elsbetiae_contig17179.4776.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17179.4776.1
Unique NamemRNA_L-elsbetiae_contig17179.4776.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig17179.4776.1 vs. uniprot
Match: A0A6H5LM37_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LM37_9PHAE)

HSP 1 Score: 111 bits (277), Expect = 2.060e-28
Identity = 59/81 (72.84%), Postives = 65/81 (80.25%), Query Frame = 1
Query:    1 MPAFTHQASPDDPEEALKKELLTLQAQRDALEMEADAIASELKSPGAGGEPAVGVKGPLVDSDGYPLAGVDLFNVRAKRHR 243
             P    Q +   PEEAL+KEL+ LQAQRDALE+EADAIASELKSPGA GE  VGVKG LVD+DG+PLAG DLFNVR KRHR
Sbjct:    7 QPQQPQQQAIPSPEEALRKELVVLQAQRDALELEADAIASELKSPGANGEAPVGVKGALVDADGFPLAGFDLFNVREKRHR 87          
BLAST of mRNA_L-elsbetiae_contig17179.4776.1 vs. uniprot
Match: A0A7S3HBQ7_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HBQ7_9STRA)

HSP 1 Score: 75.5 bits (184), Expect = 6.850e-15
Identity = 39/67 (58.21%), Postives = 46/67 (68.66%), Query Frame = 1
Query:   43 EALKKELLTLQAQRDALEMEADAIASELKSPGAGGEPAVGVKGPLVDSDGYPLAGVDLFNVRAKRHR 243
            E L+  L  L AQRDALE EADAI SEL SPG  GEP  G+K P VD++GYP   +D+ NV+ KR R
Sbjct:   12 EILRGTLNNLSAQRDALEAEADAIHSELTSPGINGEPPAGIKTPFVDAEGYPRGDIDIINVKDKRRR 78          
BLAST of mRNA_L-elsbetiae_contig17179.4776.1 vs. uniprot
Match: A0A482S8P2_9ARCH (Nas2_N domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482S8P2_9ARCH)

HSP 1 Score: 71.2 bits (173), Expect = 2.980e-13
Identity = 36/65 (55.38%), Postives = 48/65 (73.85%), Query Frame = 1
Query:   49 LKKELLTLQAQRDALEMEADAIASELKSPGAGGEPAVGVKGPLVDSDGYPLAGVDLFNVRAKRHR 243
            L++ L TL AQR+ LE+EADAI SEL SPG  GEP  G+K PLVD++ +P   +D++NV+ KR R
Sbjct:    7 LRQSLNTLIAQRELLEVEADAIHSELTSPGPNGEPPAGIKDPLVDAEDFPRNDIDIYNVKRKRLR 71          
BLAST of mRNA_L-elsbetiae_contig17179.4776.1 vs. uniprot
Match: A0A448ZSK9_9STRA (Nas2_N domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZSK9_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 7.960e-12
Identity = 35/81 (43.21%), Postives = 53/81 (65.43%), Query Frame = 1
Query:    1 MPAFTHQASPDDPEEALKKELLTLQAQRDALEMEADAIASELKSPGAGGEPAVGVKGPLVDSDGYPLAGVDLFNVRAKRHR 243
            M +  H+   D+PE AL+K L +L AQR A++ EADAI +EL +P   G   +G+  PLVD +GYP   +D++  R++R+R
Sbjct:    1 MASTPHEIENDNPETALRKTLASLDAQRTAIQEEADAIIAELTTPPREGVEPMGLDTPLVDQEGYPRGDIDVYRARSQRNR 81          
BLAST of mRNA_L-elsbetiae_contig17179.4776.1 vs. uniprot
Match: A0A7S3LKN0_9STRA (26S proteasome non-ATPase regulatory subunit 9 n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LKN0_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.580e-8
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   43 EALKKELLTLQAQRDALEMEADAIASELKSPGAGGEPAVGVKGPLVDSDGYPLAGVDLFNVRAKRHR 243
            E L+ +   L+ ++ A+E+E  AIA EL SPG    P VG+KG LVD +G+P A VD+  +R +R+R
Sbjct:    6 EQLRAKFAELEEKKKAMEVEISAIAQELNSPGPNKAPPVGMKGNLVDHEGFPRADVDVHAIRLQRNR 72          
BLAST of mRNA_L-elsbetiae_contig17179.4776.1 vs. uniprot
Match: A0A7S3LJE4_9STRA (26S proteasome non-ATPase regulatory subunit 9 n=2 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3LJE4_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 2.830e-8
Identity = 30/67 (44.78%), Postives = 44/67 (65.67%), Query Frame = 1
Query:   43 EALKKELLTLQAQRDALEMEADAIASELKSPGAGGEPAVGVKGPLVDSDGYPLAGVDLFNVRAKRHR 243
            E L+ +   L+ ++ A+E+E  AIA EL SPG    P VG+KG LVD +G+P A VD+  +R +R+R
Sbjct:    6 EQLRAKFAELEEKKKAMEVEISAIAQELNSPGPNKAPPVGMKGNLVDHEGFPRADVDVHAIRLQRNR 72          
BLAST of mRNA_L-elsbetiae_contig17179.4776.1 vs. uniprot
Match: A0A024G3E9_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024G3E9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 5.020e-8
Identity = 32/63 (50.79%), Postives = 43/63 (68.25%), Query Frame = 1
Query:   55 KELLTLQAQRDALEMEADAIASELKSPGAGGEPAVGVKGPLVDSDGYPLAGVDLFNVRAKRHR 243
            KEL  L+A++  LE E  +I  EL S    G  AVG+KGPLVDS+G+P A +D++ VR +RHR
Sbjct:    8 KELDALRAKKTELEDEIASITKELTS----GPMAVGIKGPLVDSEGFPRADIDIYTVRHQRHR 66          
BLAST of mRNA_L-elsbetiae_contig17179.4776.1 vs. uniprot
Match: A0A2D4BRX5_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BRX5_PYTIN)

HSP 1 Score: 56.6 bits (135), Expect = 1.890e-7
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   46 ALKKELLTLQAQRDALEMEADAIASELKSPGAGGEPAVGVKGPLVDSDGYPLAGVDLFNVRAKRH 240
            +L +E   L  Q+DALE E  AIA EL S    G  A G+KGPLVD++G+P A +D++ VR +RH
Sbjct:    4 SLMEEYAQLTQQKDALEAEIAAIAEELTS----GPNAPGLKGPLVDAEGFPRADIDVYRVRHQRH 64          
BLAST of mRNA_L-elsbetiae_contig17179.4776.1 vs. uniprot
Match: A0A7S0DG52_MICPS (Hypothetical protein (Fragment) n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0DG52_MICPS)

HSP 1 Score: 55.1 bits (131), Expect = 2.900e-7
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 1
Query:   52 KKELLTLQAQRDALEMEADAIASELKSPGAGGEPAVGVKGPLVDSDGYPLAGVDLFNVRAKRHR 243
            ++ + ++ A R+A+E E  +IA  L  PGA      G+KGPLVD +G+P+ GVDL+ VRA R R
Sbjct:   19 RERVTSMYAAREAMETEMASIAGRLSQPGA-----PGLKGPLVDKEGFPIPGVDLYAVRADRGR 77          
BLAST of mRNA_L-elsbetiae_contig17179.4776.1 vs. uniprot
Match: A0A7S4VM81_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VM81_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.270e-7
Identity = 32/65 (49.23%), Postives = 43/65 (66.15%), Query Frame = 1
Query:   52 KKELLTLQAQRDALEMEADAIASEL-KSPGAGGEPAVGVKGPLVDSDGYPLAGVDLFNVRAKRHR 243
            ++ LL+L A+R ALEMEA AI  EL + P  GG P +G+  PLVD DGYP + +D++  R  R R
Sbjct:   82 RQTLLSLDARRQALEMEASAIIDELTREPEDGGIP-MGIDTPLVDHDGYPRSDIDVYRARTLRKR 145          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17179.4776.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A6H5LM37_9PHAE2.060e-2872.84Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3HBQ7_9STRA6.850e-1558.21Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A482S8P2_9ARCH2.980e-1355.38Nas2_N domain-containing protein n=1 Tax=archaeon ... [more]
A0A448ZSK9_9STRA7.960e-1243.21Nas2_N domain-containing protein n=1 Tax=Pseudo-ni... [more]
A0A7S3LKN0_9STRA1.580e-844.7826S proteasome non-ATPase regulatory subunit 9 n=1... [more]
A0A7S3LJE4_9STRA2.830e-844.7826S proteasome non-ATPase regulatory subunit 9 n=2... [more]
A0A024G3E9_9STRA5.020e-850.79Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A2D4BRX5_PYTIN1.890e-749.23Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A7S0DG52_MICPS2.900e-745.31Hypothetical protein (Fragment) n=1 Tax=Micromonas... [more]
A0A7S4VM81_9STRA3.270e-749.23Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17179contigL-elsbetiae_contig17179:1242..1487 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.7
Seed ortholog evalue1.6e-22
Seed eggNOG ortholog2880.D8LKY7
Preferred nameNAS2
KEGG koko:K06693,ko:K07936
KEGG Pathwayko03008,ko03013,ko05166,ko05169,map03008,map03013,map05166,map05169
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0008540,GO:0009056,GO:0009057,GO:0009987,GO:0016043,GO:0019538,GO:0019941,GO:0022607,GO:0022624,GO:0030163,GO:0032991,GO:0034622,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043248,GO:0043632,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0051603,GO:0065003,GO:0070682,GO:0071704,GO:0071840,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.26S Proteasome non-ATPase regulatory subunit
EggNOG OGsCOG0265@1,KOG3129@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03016,ko03019,ko03036,ko03051,ko04031,ko04147
Exons1
Model size246
Cds size246
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815715.6795504-CDS-L-elsbetiae_contig17179:1241..14871622815715.6795504-CDS-L-elsbetiae_contig17179:1241..1487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17179 1242..1487 +
1691683055.681358-CDS-L-elsbetiae_contig17179:1241..14871691683055.681358-CDS-L-elsbetiae_contig17179:1241..1487Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17179 1242..1487 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17179.4776.1prot_L-elsbetiae_contig17179.4776.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17179 1242..1487 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17179.4776.1

>prot_L-elsbetiae_contig17179.4776.1 ID=prot_L-elsbetiae_contig17179.4776.1|Name=mRNA_L-elsbetiae_contig17179.4776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=82bp
MPAFTHQASPDDPEEALKKELLTLQAQRDALEMEADAIASELKSPGAGGE
PAVGVKGPLVDSDGYPLAGVDLFNVRAKRHR*
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mRNA from alignment at L-elsbetiae_contig17179:1242..1487+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17179.4776.1 ID=mRNA_L-elsbetiae_contig17179.4776.1|Name=mRNA_L-elsbetiae_contig17179.4776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=246bp|location=Sequence derived from alignment at L-elsbetiae_contig17179:1242..1487+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTGCCTTCACGCACCAAGCCTCCCCGGACGACCCAGAGGAGGCCCT GAAGAAGGAGCTCCTCACGCTCCAGGCGCAGAGAGACGCCCTCGAGATGG AGGCGGACGCGATCGCCAGCGAGCTCAAGTCGCCCGGCGCCGGCGGCGAG CCGGCCGTAGGGGTGAAGGGTCCGTTGGTGGACTCCGACGGCTACCCGCT CGCGGGAGTCGACCTGTTCAACGTGCGGGCGAAGAGACACCGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17179:1242..1487+

>mRNA_L-elsbetiae_contig17179.4776.1 ID=mRNA_L-elsbetiae_contig17179.4776.1|Name=mRNA_L-elsbetiae_contig17179.4776.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=492bp|location=Sequence derived from alignment at L-elsbetiae_contig17179:1242..1487+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCTGCCTTCACGCACCAAGCCTCCCCGGACGACCCAGAGGAGGCCCT
GAAGAAGGAGCTCCTCACGCTCCAGGCGCAGAGAGACGCCCTCGAGATGG
AGGCGGACGCGATCGCCAGCGAGCTCAAGTCGCCCGGCGCCGGCGGCGAG
CCGGCCGTAGGGGTGAAGGGTCCGTTGGTGGACTCCGACGGCTACCCGCT
CGCGGGAGTCGACCTGTTCAACGTGCGGGCGAAGAGACACCGGTGAATGC
CTGCCTTCACGCACCAAGCCTCCCCGGACGACCCAGAGGAGGCCCTGAAG
AAGGAGCTCCTCACGCTCCAGGCGCAGAGAGACGCCCTCGAGATGGAGGC
GGACGCGATCGCCAGCGAGCTCAAGTCGCCCGGCGCCGGCGGCGAGCCGG
CCGTAGGGGTGAAGGGTCCGTTGGTGGACTCCGACGGCTACCCGCTCGCG
GGAGTCGACCTGTTCAACGTGCGGGCGAAGAGACACCGGTGA
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