mRNA_L-elsbetiae_contig1715.4767.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1715.4767.1
Unique NamemRNA_L-elsbetiae_contig1715.4767.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1715.4767.1 vs. uniprot
Match: A0A6H5KAX6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KAX6_9PHAE)

HSP 1 Score: 161 bits (407), Expect = 1.770e-39
Identity = 132/337 (39.17%), Postives = 175/337 (51.93%), Query Frame = 1 
Query:  271 RGTRGEDNEHFKGATGKESLRVHETWQSRASPLPSSTALSPKFQALKHGSRQRADPGTCASLPTGSGRQFSNEGEGLNQHEDDFKEGSTTESAGESSLSSNGSGLDGDGGGILRVEDTLSGSGGACPSPGFEPPAEDMVDERVSDRDVEQRASTPAG-------------RGTKRQSDADFTLAQVIDHHMSRRRLNGVVSDRERVRVEPNSGCERRAASIDNAGSQNRHNLN---DGTWPSAGAGCCADATIVAAAWTNGCVLPLTEAVAPHMRLVAPIFAAEPEGRRVVVHTAAAVASAAAILALPGHRLEVTGTCRDGLLLELRP-----KEEG 1218
            RG+R E    F     + ++   +T  S+ S LP  TA +PK Q       +    G   + PTGS   F +   GL++ + D K GST  +A  ++L+S   G+D   G     +   SG                    R++ R  E+ A T  G             RGTKR+S AD TL QVIDHHM+RRRL+G  +  +  R  P+S     ++    AG+      N   +G  PS        A +V AAW++GC+LPLTEA APHMRLVAP+ A EPEGRRVV+ TAAAVA+ AA LALP HR+EVTG  +DG+LLEL P     +EEG
Sbjct:  285 RGSREEKGPRFAFKQDEGNVNRGDTRCSKTSALPPPTA-TPKLQ-------RHPQAGKYVAPPTGSSPLFRDPATGLDRSQQDSKGGSTRNTARYATLTSTDRGVDRSRGCYGNYDGGHSG--------------------RINQRSCERTARTSKGFESGTKKKVAEARRGTKRRSTADVTLEQVIDHHMARRRLDGAANGPDGSRAGPHSSIGNASSHSTGAGADCLRGENLRSNGKRPSP-CSVSDGANLVVAAWSSGCILPLTEAAAPHMRLVAPLLAGEPEGRRVVLRTAAAVATGAAKLALPHHRVEVTGVWQDGILLELCPAPLVEREEG 592
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BLAST of mRNA_L-elsbetiae_contig1715.4767.1 vs. uniprot
Match: D7G8F4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8F4_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 3.260e-39
Identity = 125/322 (38.82%), Postives = 168/322 (52.17%), Query Frame = 1 
Query:  274 GTRGEDNEHFKGATGKESLRVHETWQSRASPLPSSTALSPKFQALKHGSRQRADPGTCASLPTGSGRQFSNEGEGLNQHEDDFKEGSTTESAGESSLSSNGSGLDGDGGGILRVEDTLSGSGGACPSPGFEPPAEDMVDERVSDRDVEQRASTPAGRGTKRQSDADFTLAQVIDHHMSRRRLNGVVSDRERVRVEPNSGCERRAASIDNAGSQNRHNLNDGTWPSAGAGCCAD--ATIVAAAWTNGCVLPLTEAVAPHMRLVAPIFAAEPEGRRVVVHTAAAVASAAAILALPGHRLEVTGTCRDGLLLELRP-----KEEG 1218
            G+R E+   F     +  +   +T  S+ S LP +TA + K Q       +    GTC   PTGS   F +   GL++ + D K GST  +A  ++ +S   G       I+R         G       +   E             ++    A RGTKR+S AD TL QVIDHHM+RRRL+G  +  +  R  P+S     ++    AG+      N  +     + C     AT+V AAW++GC+LPLTEA APHMRLVAP+ A EPEGRRVV+ TAAAVA+ AA LALP HR+EVTG  ++GLLLEL P     +EEG
Sbjct:  348 GSREEEGSRFAFTQDEGDMNRGDTRCSKTSALPPATATT-KLQ-------RHPQAGTCVGPPTGSSPLFRDPAGGLDRSQKDSKGGSTRSAARYATPTSTDRG-------IIRSRGCYGNYDGGRSGGVNQRSCERTARTSKGSESGTKKKVAEARRGTKRRSTADVTLEQVIDHHMARRRLDGAANGLDGSRAGPHSRIGNTSSHSTGAGTDRLRGENPRSNGKRPSPCSVSDGATLVVAAWSSGCILPLTEAAAPHMRLVAPLLAGEPEGRRVVLRTAAAVATGAAKLALPQHRVEVTGVWQNGLLLELCPAPLVEREEG 654
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1715.4767.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KAX6_9PHAE1.770e-3939.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G8F4_ECTSI3.260e-3938.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1715contigL-elsbetiae_contig1715:9526..11075 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1239
Cds size1236
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.987678-CDS-L-elsbetiae_contig1715:9527..106991622815714.987678-CDS-L-elsbetiae_contig1715:9527..10699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1715 9528..10699 -
1691683055.325445-CDS-L-elsbetiae_contig1715:9527..106991691683055.325445-CDS-L-elsbetiae_contig1715:9527..10699Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1715 9528..10699 -
1622815715.0016673-CDS-L-elsbetiae_contig1715:11011..110751622815715.0016673-CDS-L-elsbetiae_contig1715:11011..11075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1715 11012..11075 -
1691683055.3379793-CDS-L-elsbetiae_contig1715:11011..110751691683055.3379793-CDS-L-elsbetiae_contig1715:11011..11075Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1715 11012..11075 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1715.4767.1prot_L-elsbetiae_contig1715.4767.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1715 9528..11075 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1715.4767.1

>prot_L-elsbetiae_contig1715.4767.1 ID=prot_L-elsbetiae_contig1715.4767.1|Name=mRNA_L-elsbetiae_contig1715.4767.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=412bp
SGARPSGLDQEDIFEEHPGWKDGPPNEDESPGCRRQQFGERVEEDVKTSI
TTHPLEVAEPVHTVDLASARGDSICSTAKGTVTSNTKHRHRGTRGEDNEH
FKGATGKESLRVHETWQSRASPLPSSTALSPKFQALKHGSRQRADPGTCA
SLPTGSGRQFSNEGEGLNQHEDDFKEGSTTESAGESSLSSNGSGLDGDGG
GILRVEDTLSGSGGACPSPGFEPPAEDMVDERVSDRDVEQRASTPAGRGT
KRQSDADFTLAQVIDHHMSRRRLNGVVSDRERVRVEPNSGCERRAASIDN
AGSQNRHNLNDGTWPSAGAGCCADATIVAAAWTNGCVLPLTEAVAPHMRL
VAPIFAAEPEGRRVVVHTAAAVASAAAILALPGHRLEVTGTCRDGLLLEL
RPKEEGVRCSYS
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mRNA from alignment at L-elsbetiae_contig1715:9526..11075-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1715.4767.1 ID=mRNA_L-elsbetiae_contig1715.4767.1|Name=mRNA_L-elsbetiae_contig1715.4767.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1550bp|location=Sequence derived from alignment at L-elsbetiae_contig1715:9526..11075- (Laminarionema elsbetiae ELsaHSoW15)
TCCGGAGCTCGGCCAAGTGGGCTCGACCAAGAAGACATCTTCGAGGAACA
TCCAGGGTGGAAAGGTGAATCTCCTTCGTCGAACATAGCAGGGGTAGAAG
GCTATCGCGGCCGTGCACAAAGCGGGCGCATTTTGGCCATTCGGAGTCGA
CGAAACGCCTTCCTGGGGTTTCTTGCACGACCACGACATATTTAGGAGGA
GAGAGCAGAAACACGTCCGGCATTACAAAACGCGTATTCATATATATGCT
CGGTATGCATATATTATGCGAAGAGGTTCTTGTGCAAAGGGAAGGATCGC
CTGAAAATAGCGAGACGGAATACCAAAGTTCACGGCAAATTTTAAACCAA
ACACTTATACACGTTCTCGCGCGCAGATGGTCCTCCGAACGAGGACGAAT
CTCCCGGATGCAGACGCCAGCAATTCGGTGAAAGGGTTGAGGAAGACGTG
AAAACATCTATTACCACTCACCCTTTGGAGGTAGCCGAGCCGGTACATAC
GGTGGACTTAGCTTCTGCGCGCGGTGACTCCATTTGTTCGACAGCCAAAG
GAACGGTCACGTCCAACACTAAGCATCGCCACCGCGGCACCAGGGGGGAA
GACAATGAACATTTCAAAGGGGCGACAGGCAAGGAAAGTCTGCGGGTGCA
TGAGACATGGCAAAGCAGAGCATCGCCGCTGCCTTCCTCCACTGCACTTT
CGCCGAAGTTCCAAGCGCTCAAGCACGGTTCCCGCCAGCGGGCTGATCCC
GGCACGTGTGCTTCCCTCCCAACTGGTAGCGGTCGACAATTCAGCAACGA
AGGGGAAGGGCTGAACCAGCATGAGGACGATTTCAAGGAGGGTTCCACAA
CGGAGTCGGCAGGTGAATCTTCTCTGAGTAGCAATGGCAGCGGCCTCGAC
GGTGACGGGGGTGGTATTTTGCGCGTTGAAGACACGTTATCTGGTAGTGG
TGGGGCCTGCCCGTCACCAGGCTTCGAACCACCTGCCGAGGATATGGTAG
ACGAGCGCGTTTCCGACCGTGATGTCGAGCAACGCGCATCAACGCCAGCC
GGTAGAGGCACGAAGCGCCAAAGCGACGCCGATTTTACCCTGGCGCAGGT
CATCGACCACCACATGTCGCGTCGTCGTTTGAACGGGGTAGTATCCGATC
GCGAGAGGGTCCGGGTTGAACCAAACTCAGGCTGCGAGAGAAGAGCTGCA
AGCATCGACAATGCCGGAAGCCAGAACCGTCATAATTTGAATGATGGGAC
ATGGCCGTCGGCAGGAGCTGGTTGTTGTGCTGATGCCACAATAGTGGCGG
CGGCCTGGACAAACGGCTGCGTTCTGCCTCTGACTGAAGCGGTGGCCCCT
CACATGCGCCTGGTTGCGCCAATATTTGCTGCCGAACCTGAGGGCCGACG
CGTCGTTGTCCACACTGCTGCAGCCGTCGCTTCCGCGGCCGCGATATTGG
CCCTGCCTGGACACCGCCTAGAGGTGACGGGAACGTGCCGAGATGGCCTC
TTGCTGGAACTGCGCCCAAAGGAGGAGGGCGTGCGGTGCTCGTACTCACT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1715:9526..11075-

>mRNA_L-elsbetiae_contig1715.4767.1 ID=mRNA_L-elsbetiae_contig1715.4767.1|Name=mRNA_L-elsbetiae_contig1715.4767.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2472bp|location=Sequence derived from alignment at L-elsbetiae_contig1715:9526..11075- (Laminarionema elsbetiae ELsaHSoW15)
TCCGGAGCTCGGCCAAGTGGGCTCGACCAAGAAGACATCTTCGAGGAACA
TCCAGGGTGGAAAGTCCGGAGCTCGGCCAAGTGGGCTCGACCAAGAAGAC
ATCTTCGAGGAACATCCAGGGTGGAAAGATGGTCCTCCGAACGAGGACGA
ATCTCCCGGATGCAGACGCCAGCAATTCGGTGAAAGGGTTGAGGAAGACG
TGAAAACATCTATTACCACTCACCCTTTGGAGGTAGCCGAGCCGGTACAT
ACGGTGGACTTAGCTTCTGCGCGCGGTGACTCCATTTGTTCGACAGCCAA
AGGAACGGTCACGTCCAACACTAAGCATCGCCACCGCGGCACCAGGGGGG
AAGACAATGAACATTTCAAAGGGGCGACAGGCAAGGAAAGTCTGCGGGTG
CATGAGACATGGCAAAGCAGAGCATCGCCGCTGCCTTCCTCCACTGCACT
TTCGCCGAAGTTCCAAGCGCTCAAGCACGGTTCCCGCCAGCGGGCTGATC
CCGGCACGTGTGCTTCCCTCCCAACTGGTAGCGGTCGACAATTCAGCAAC
GAAGGGGAAGGGCTGAACCAGCATGAGGACGATTTCAAGGAGGGTTCCAC
AACGGAGTCGGCAGGTGAATCTTCTCTGAGTAGCAATGGCAGCGGCCTCG
ACGGTGACGGGGGTGGTATTTTGCGCGTTGAAGACACGTTATCTGGTAGT
GGTGGGGCCTGCCCGTCACCAGGCTTCGAACCACCTGCCGAGGATATGGT
AGACGAGCGCGTTTCCGACCGTGATGTCGAGCAACGCGCATCAACGCCAG
CCGGTAGAGGCACGAAGCGCCAAAGCGACGCCGATTTTACCCTGGCGCAG
GTCATCGACCACCACATGTCGCGTCGTCGTTTGAACGGGGTAGTATCCGA
TCGCGAGAGGGTCCGGGTTGAACCAAACTCAGGCTGCGAGAGAAGAGCTG
CAAGCATCGACAATGCCGGAAGCCAGAACCGTCATAATTTGAATGATGGG
ACATGGCCGTCGGCAGGAGCTGGTTGTTGTGCTGATGCCACAATAGTGGC
GGCGGCCTGGACAAACGGCTGCGTTCTGCCTCTGACTGAAGCGGTGGCCC
CTCACATGCGCCTGGTTGCGCCAATATTTGCTGCCGAACCTGAGGGCCGA
CGCGTCGTTGTCCACACTGCTGCAGCCGTCGCTTCCGCGGCCGCGATATT
GGCCCTGCCTGGACACCGCCTAGAGGTGACGGGAACGTGCCGAGATGGCC
TCTTGCTGGAACTGCGCCCAAAGGAGGAGGGCGTGCGGTGCTCGTACTCA
ATGGTCCTCCGAACGAGGACGAATCTCCCGGATGCAGACGCCAGCAATTC
GGTGAAAGGGTTGAGGAAGACGTGAAAACATCTATTACCACTCACCCTTT
GGAGGTAGCCGAGCCGGTACATACGGTGGACTTAGCTTCTGCGCGCGGTG
ACTCCATTTGTTCGACAGCCAAAGGAACGGTCACGTCCAACACTAAGCAT
CGCCACCGCGGCACCAGGGGGGAAGACAATGAACATTTCAAAGGGGCGAC
AGGCAAGGAAAGTCTGCGGGTGCATGAGACATGGCAAAGCAGAGCATCGC
CGCTGCCTTCCTCCACTGCACTTTCGCCGAAGTTCCAAGCGCTCAAGCAC
GGTTCCCGCCAGCGGGCTGATCCCGGCACGTGTGCTTCCCTCCCAACTGG
TAGCGGTCGACAATTCAGCAACGAAGGGGAAGGGCTGAACCAGCATGAGG
ACGATTTCAAGGAGGGTTCCACAACGGAGTCGGCAGGTGAATCTTCTCTG
AGTAGCAATGGCAGCGGCCTCGACGGTGACGGGGGTGGTATTTTGCGCGT
TGAAGACACGTTATCTGGTAGTGGTGGGGCCTGCCCGTCACCAGGCTTCG
AACCACCTGCCGAGGATATGGTAGACGAGCGCGTTTCCGACCGTGATGTC
GAGCAACGCGCATCAACGCCAGCCGGTAGAGGCACGAAGCGCCAAAGCGA
CGCCGATTTTACCCTGGCGCAGGTCATCGACCACCACATGTCGCGTCGTC
GTTTGAACGGGGTAGTATCCGATCGCGAGAGGGTCCGGGTTGAACCAAAC
TCAGGCTGCGAGAGAAGAGCTGCAAGCATCGACAATGCCGGAAGCCAGAA
CCGTCATAATTTGAATGATGGGACATGGCCGTCGGCAGGAGCTGGTTGTT
GTGCTGATGCCACAATAGTGGCGGCGGCCTGGACAAACGGCTGCGTTCTG
CCTCTGACTGAAGCGGTGGCCCCTCACATGCGCCTGGTTGCGCCAATATT
TGCTGCCGAACCTGAGGGCCGACGCGTCGTTGTCCACACTGCTGCAGCCG
TCGCTTCCGCGGCCGCGATATTGGCCCTGCCTGGACACCGCCTAGAGGTG
ACGGGAACGTGCCGAGATGGCCTCTTGCTGGAACTGCGCCCAAAGGAGGA
GGGCGTGCGGTGCTCGTACTCA
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