mRNA_L-elsbetiae_contig17148.4765.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17148.4765.1
Unique NamemRNA_L-elsbetiae_contig17148.4765.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig17148.4765.1 vs. uniprot
Match: D7FS26_ECTSI (Gamma-glutamylcyclotransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS26_ECTSI)

HSP 1 Score: 214 bits (545), Expect = 6.690e-68
Identity = 107/145 (73.79%), Postives = 120/145 (82.76%), Query Frame = 3
Query:    3 SMDHRGTPESPGLVATLISDSDLEALGERSAGDPPSRTHGVAYLVPDDKAEQVLAGLDFREKGGYTRATVDVFPTGGAG------------AAPTRALLYTATTDNPNFSLSSLEEAADTIASAVGPSGPNRDYLFSLSEYLQKV 401
            SMDHRGTPE PGLVATL+SD+DLEALG+RSA DPPSRTHGVAYL+P++KAE+VLAGLDFREKGGYTRATVDV P GG G            A PT ALLYT TT NPNF + S++EAADTIA AVGPSGPN +YLFSLS+YL+KV
Sbjct:   91 SMDHRGTPEFPGLVATLVSDADLEALGQRSASDPPSRTHGVAYLIPENKAEEVLAGLDFREKGGYTRATVDVLPAGGEGGQKEDTTSSEDTAVPTPALLYTGTTSNPNFHVPSIDEAADTIALAVGPSGPNYEYLFSLSQYLEKV 235          
BLAST of mRNA_L-elsbetiae_contig17148.4765.1 vs. uniprot
Match: A0A7S2FBV1_9STRA (Gamma-glutamylcyclotransferase (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FBV1_9STRA)

HSP 1 Score: 149 bits (375), Expect = 1.910e-42
Identity = 80/135 (59.26%), Postives = 98/135 (72.59%), Query Frame = 3
Query:    3 SMDHRGTPESPGLVATLISDSDLEALGERSAGDPPSRTHGVAYLVPDDKAEQVLAGLDFREKGGYTRATVDVFPTGGAGAAPTRALLYTATTDNPNFSLSSLEE--AADTIASAVGPSGPNRDYLFSLSEYLQKV 401
            S DHRGTP+SPGLVAT++SD+ LEA+G R AG PPS T G+ Y +  + AE VLA LDFREKGGYTR  V V P   AG  P +ALLY+AT DNPNF  + L+   AA  IASAVGPSG N +YL +L+E+L+ +
Sbjct:   92 STDHRGTPKSPGLVATMLSDAQLEAIGLREAGVPPSSTIGMGYEIATESAEGVLADLDFREKGGYTREVVLVQPL--AGGEPVKALLYSATPDNPNFDKTMLDPDAAATVIASAVGPSGSNAEYLSNLTEWLRSL 224          
BLAST of mRNA_L-elsbetiae_contig17148.4765.1 vs. uniprot
Match: R1C337_EMIHU (Gamma-glutamylcyclotransferase (Fragment) n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1C337_EMIHU)

HSP 1 Score: 146 bits (368), Expect = 4.910e-42
Identity = 83/136 (61.03%), Postives = 95/136 (69.85%), Query Frame = 3
Query:    3 SMDHRGTPESPGLVATLISDSDLEALGERSAGDPPSRTHGVAYLVPDDKAEQVLAGLDFREKGGYTRATVDVFPTGGAGAAPTRALLYTATTDNPNFS---LSSLEEAADTIASAVGPSGPNRDYLFSLSEYLQKV 401
            S DHRGTP SPGLVAT+ISD+ LEA G R  G+PPS T G+ Y V  D   +VLA LDFREKGGYTR  V V P    GA P RAL+Y+AT DNP FS   L+    AA TIASA GPSG NRDYL SL+ +L++V
Sbjct:   35 SCDHRGTPSSPGLVATMISDAQLEAKGLREPGEPPSTTCGLCYRVGADDVPRVLANLDFREKGGYTREVVQVQPA-RPGAPPVRALVYSATCDNPLFSPVMLADPAAAALTIASAHGPSGANRDYLESLAAWLREV 169          
BLAST of mRNA_L-elsbetiae_contig17148.4765.1 vs. uniprot
Match: A0A836C8G5_9STRA (Gamma-glutamylcyclotransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8G5_9STRA)

HSP 1 Score: 145 bits (365), Expect = 2.990e-40
Identity = 77/136 (56.62%), Postives = 90/136 (66.18%), Query Frame = 3
Query:    3 SMDHRGTPESPGLVATLISDSDLEALGERSAGDPPSRTHGVAYLVPDDKAEQVLAGLDFREKGGYTRATVDVF---PTGGAGAAPTRALLYTATTDNPNFSLSSLEEAADTIASAVGPSGPNRDYLFSLSEYLQKV 401
            SMDHRGTP +PGLV TL+ D  LE+LG R     PS T G  Y VPDD  + VLA LD REKGGYTR  VDV     +GGA     +ALLYT TTDNPNF L+S  +AA  IA A GPSG N +YLF+L+ +L+  
Sbjct:  121 SMDHRGTPAAPGLVVTLVPDDHLESLGMRDPSSAPSETFGAVYRVPDDDVQAVLADLDHREKGGYTRCIVDVHCHDRSGGAQEEVLQALLYTGTTDNPNFWLASAADAAAIIARAHGPSGANTEYLFNLATWLRSA 256          
BLAST of mRNA_L-elsbetiae_contig17148.4765.1 vs. uniprot
Match: W7TZL9_9STRA (Retinitis pigmentosa gtpase regulator n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TZL9_9STRA)

HSP 1 Score: 138 bits (348), Expect = 1.210e-35
Identity = 75/132 (56.82%), Postives = 91/132 (68.94%), Query Frame = 3
Query:   33 PGLVATLISDSDLEALGERSAGDPPSRTHGVAYLVPDDKAEQVLAGLDFREKGGYTRATVDVFPT----GGAGAAPT----RALLYTATTDNPNFSL-SSLEEAADTIASAVGPSGPNRDYLFSLSEYLQKV 401
            PGLV T++SDS+LE +G R A DPPSR HGVAY +PD+   +VL  LDFREKGGYTRA V+V PT    GG   +      RALLYTA  DNPNF   S+LEEAA  +A + GPSG NR+YLF +  YL++ 
Sbjct:    2 PGLVVTVLSDSELETMGMREATDPPSRVHGVAYRIPDENVARVLDELDFREKGGYTRAVVEVKPTTSSTGGTDKSGRQEVIRALLYTANADNPNFHHPSTLEEAAHIVAWSRGPSGENREYLFEIEAYLRRA 133          
BLAST of mRNA_L-elsbetiae_contig17148.4765.1 vs. uniprot
Match: A0A7S4A4B5_9STRA (Gamma-glutamylcyclotransferase n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4B5_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.100e-33
Identity = 73/136 (53.68%), Postives = 85/136 (62.50%), Query Frame = 3
Query:    3 SMDHRGTPESPGLVATLISDSDLEALGERSAGDPPSRTHGVAYLVPDDKAEQVLAGLDFREKGGYTRATVDVFPTGGAGAAPTRALLYTATTDNPNFSLSSLEE---AADTIASAVGPSGPNRDYLFSLSEYLQKV 401
            S DHRGTP +PGLVAT++ D DL  L  +  G   S   G AY V D  A QVL  LDFREKGGYTR  V V   GG       ALLY  T DNPNF  S++++   AA TI  AVGPSGPNRDYL +L+ +L +V
Sbjct:   64 SQDHRGTPAAPGLVATVVRDEDLVKLALQDEGYTGSCV-GTAYRVADADARQVLDDLDFREKGGYTREVVSVVHAGGT----LDALLYRGTVDNPNFDASAIKDLDAAALTIKDAVGPSGPNRDYLLNLATWLSEV 194          
BLAST of mRNA_L-elsbetiae_contig17148.4765.1 vs. uniprot
Match: A0A7S2FA59_9STRA (Gamma-glutamylcyclotransferase (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FA59_9STRA)

HSP 1 Score: 122 bits (306), Expect = 3.690e-32
Identity = 64/106 (60.38%), Postives = 76/106 (71.70%), Query Frame = 3
Query:    3 SMDHRGTPESPGLVATLISDSDLEALGERSAGDPPSRTHGVAYLVPDDKAEQVLAGLDFREKGGYTRATVDVFPTGGAGAAPTRALLYTATTDNPNFSLSSLEEAA 320
            S DHRGTP+SPGLVAT++SD+ LEA+G R AG PPS T G+ Y +  + AE VLA LDFREKGGYTR  V V P   AG  P +ALLY+AT DNPNF  + L+  A
Sbjct:  117 STDHRGTPKSPGLVATMLSDAQLEAIGLREAGVPPSSTIGMGYEIATESAEGVLADLDFREKGGYTREVVLVQPL--AGGEPVKALLYSATPDNPNFDKTMLDPDA 220          
BLAST of mRNA_L-elsbetiae_contig17148.4765.1 vs. uniprot
Match: A0A7S3JR24_9STRA (Gamma-glutamylcyclotransferase n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JR24_9STRA)

HSP 1 Score: 119 bits (299), Expect = 7.990e-31
Identity = 70/139 (50.36%), Postives = 88/139 (63.31%), Query Frame = 3
Query:    3 SMDHRGTPESPGLVATLISDSDLEALGERSAGDPPSRTHGVAYLVPDDKAEQVLAGLDFREKGGYTR--ATVDVFPTGGAGAAPTRALLYTATTDNPNF-------SLSSLEEAADTIASAVGPSGPNRDYLFSLSEYL 392
            S DHRGTPESPGLV T++    ++ALG     +P   T G AY +PDD  E VL  LDFREKGGYTR  AT+     G    +  +AL+Y+AT DNPNF       + S+LE+AA  IA + GPSGPNR+YL  L++ L
Sbjct:   70 STDHRGTPESPGLVCTMLPTQAVKALGY----EPDMYTRGKAYRIPDDCVENVLEALDFREKGGYTRDLATIKFDDDG----SEQKALIYSATIDNPNFVPELASHTSSALEKAATLIAHSHGPSGPNREYLLKLADVL 200          
BLAST of mRNA_L-elsbetiae_contig17148.4765.1 vs. uniprot
Match: A0A0G4EU07_VITBC (Gamma-glutamylcyclotransferase n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EU07_VITBC)

HSP 1 Score: 106 bits (265), Expect = 7.030e-26
Identity = 59/142 (41.55%), Postives = 81/142 (57.04%), Query Frame = 3
Query:    3 SMDHRGTPESPGLVATLISDSDLEALGERSAGDPPSRTHGVAYLVPDDKAEQVLAGLDFREKGGYTRATVDVFP---TGGAGAAPTRALLYTATTDNPNF------SLSSLEEAADTIASAVGPSGPNRDYLFSLSEYLQKV 401
            SMDHRGTP SPG V TL+  +   ++      +     HGVAY +PD++ E+VL  LD+REKGGY+R  +DV      G  G     AL Y     NP +      S   L++AA  I S+ GPSGPNR+YL+ L ++L+ +
Sbjct:   74 SMDHRGTPASPGRVVTLVKHAHPASV---PLSEAEGLVHGVAYRIPDERVEEVLDALDYREKGGYSRLLLDVTEWCADGKEGGRRVTALAYCGNETNPAYDAFDDESDEGLQQAAHRIFSSTGPSGPNREYLYRLGDFLEAI 212          
BLAST of mRNA_L-elsbetiae_contig17148.4765.1 vs. uniprot
Match: A0A0G4HY76_9ALVE (Gamma-glutamylcyclotransferase n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4HY76_9ALVE)

HSP 1 Score: 107 bits (266), Expect = 7.520e-26
Identity = 66/139 (47.48%), Postives = 84/139 (60.43%), Query Frame = 3
Query:    3 SMDHRGTPESPGLVATLISDSDLEALGERSAGDPPSRTHGVAYLVPDDKAEQVLAGLDFREKGGYTRATVDVFPTGGAGAA----PTRALLYTATTDNPNFSL-----SSLEEAADTIASAVGPSGPNRDYLFSLSEYL 392
            S DHRGTP  PG VAT+I        G+++     S   GVAY + D++A++VLA LDFREKGGYTR  VDV P GG  +     P RA++Y  T DNP +S        LE+A   I  AVGPSGPN DYL +++ +L
Sbjct:   84 STDHRGTPTFPGRVATVI-----PVRGDQADS---SWVVGVAYRIADEEADKVLAYLDFREKGGYTRHLVDVSPLGGQESGSTEGPIRAVMYAGTEDNPAYSSFPDEGEELEKAVRQIHKAVGPSGPNVDYLRNVATFL 214          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17148.4765.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FS26_ECTSI6.690e-6873.79Gamma-glutamylcyclotransferase n=1 Tax=Ectocarpus ... [more]
A0A7S2FBV1_9STRA1.910e-4259.26Gamma-glutamylcyclotransferase (Fragment) n=1 Tax=... [more]
R1C337_EMIHU4.910e-4261.03Gamma-glutamylcyclotransferase (Fragment) n=1 Tax=... [more]
A0A836C8G5_9STRA2.990e-4056.62Gamma-glutamylcyclotransferase n=1 Tax=Tribonema m... [more]
W7TZL9_9STRA1.210e-3556.82Retinitis pigmentosa gtpase regulator n=2 Tax=Mono... [more]
A0A7S4A4B5_9STRA2.100e-3353.68Gamma-glutamylcyclotransferase n=1 Tax=Pelagomonas... [more]
A0A7S2FA59_9STRA3.690e-3260.38Gamma-glutamylcyclotransferase (Fragment) n=1 Tax=... [more]
A0A7S3JR24_9STRA7.990e-3150.36Gamma-glutamylcyclotransferase n=1 Tax=Aureoumbra ... [more]
A0A0G4EU07_VITBC7.030e-2641.55Gamma-glutamylcyclotransferase n=2 Tax=Vitrella br... [more]
A0A0G4HY76_9ALVE7.520e-2647.48Gamma-glutamylcyclotransferase n=1 Tax=Chromera ve... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17148contigL-elsbetiae_contig17148:1851..3002 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionButirosin biosynthesis, BtrG-like
Ec32 orthologEc-16_004590.2
Exons3
Model size403
Cds size402
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17148.4765.1prot_L-elsbetiae_contig17148.4765.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17148 1851..3002 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.7442632-CDS-L-elsbetiae_contig17148:1850..20241622815714.7442632-CDS-L-elsbetiae_contig17148:1850..2024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17148 1851..2024 -
1691683055.2011163-CDS-L-elsbetiae_contig17148:1850..20241691683055.2011163-CDS-L-elsbetiae_contig17148:1850..2024Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17148 1851..2024 -
1622815714.7567458-CDS-L-elsbetiae_contig17148:2474..26281622815714.7567458-CDS-L-elsbetiae_contig17148:2474..2628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17148 2475..2628 -
1691683055.2121608-CDS-L-elsbetiae_contig17148:2474..26281691683055.2121608-CDS-L-elsbetiae_contig17148:2474..2628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17148 2475..2628 -
1622815714.7692676-CDS-L-elsbetiae_contig17148:2928..30021622815714.7692676-CDS-L-elsbetiae_contig17148:2928..3002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17148 2929..3002 -
1691683055.2216527-CDS-L-elsbetiae_contig17148:2928..30021691683055.2216527-CDS-L-elsbetiae_contig17148:2928..3002Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17148 2929..3002 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17148.4765.1

>prot_L-elsbetiae_contig17148.4765.1 ID=prot_L-elsbetiae_contig17148.4765.1|Name=mRNA_L-elsbetiae_contig17148.4765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=134bp
RAWTTEAPRSRRAWWRLSFLILISRLLESVQPATRLRGPTALRILYPTTR
QSKSSPGWTLGKREDTRERRSMCFRQAAQGQHRREPCFTPRPRTTRISLC
LLSRRRPTRLLQQLGPRVRTETTFFLSQSTCRR*
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mRNA from alignment at L-elsbetiae_contig17148:1851..3002-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17148.4765.1 ID=mRNA_L-elsbetiae_contig17148.4765.1|Name=mRNA_L-elsbetiae_contig17148.4765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1152bp|location=Sequence derived from alignment at L-elsbetiae_contig17148:1851..3002- (Laminarionema elsbetiae ELsaHSoW15)
AGAGCATGGACCACCGAGGCACCCCGGAGTCGCCGGGCTTGGTGGCGACT CTCATTTCTGATTCTGATCTCGAGGTATGGTATGTAGGATAAAAAGTCCT CTTGTAAATCGTAGCCTCCCACCGCTGAGGTATCGCCGCTCTTCGACCTC CGATGTGTGGTGTGGAGCTCACTACTTATGTAGTATTGTCTCATCCCGGA ACTTCTTCCCTTCCATATCCCAACAAACCGCCCCAGTGTTGCGAAGAGCA TTCGCCTGCGCCCATGCAAAACACAACACACAGGATTCTCCTCGTGGATG CAGCGATTCTTGTTGCCAGCCTCGGAAACCACCCCCATTCTCCACCGCCG CCGTGGTACATACGTATGCCACAGGCTCTTGGAGAGCGTTCAGCCGGCGA CCCGCCTTCGAGGACCCACGGCGTTGCGTATCTTGTACCCGACGACAAGG CAGAGCAAGTCCTCGCCGGGCTGGACTTTAGGGAAAAGGGAGGATACACG AGAGCGACGGTCGATGTGTTTCCGACAGGTGATGGTATTCTAGCTTTGGC TGGAGAGAGACGGGGGGGCAGTGGGCGGTGCGGCAGTTGCATTCTGTTGT ATTAAGAAACACCGCGGTGCGCACGCGGTTTCGTCGGTGGTTGTATACGG TTACGTTGAGCGGGGCGGCTTTTTTTTTTTTCTCTCTCTGCTCCTCCGCT CTCGTCAGTGTTTGCATCAAGTCGAGCGTGTGCATATCCCACGCGGTGCC GCCGACAACAAAGATGCGGTGCTTGAAGCCTGTCACGATGTTAGAAGACA ACATGGAACACTCTTGGCTTCTGTGCGCAAGGGCCACATAGTTGACCGTC GTTTGCCTCCCGCCTGAATGTTCCGCCAGGCTCGTCCCAAAAAGGCGACG GCGGTGACGCATCAGCCGCCGTAAACAACGACCTTGTAGGAGGCGAAAGC GCCGGCGATGCAGCCACCGGTTCAGTAGGCGGCGCAGGGGCAGCACCGAC GCGAGCCTTGCTTTACACCGCGACCACGGACAACCCGAATTTCTCTTTGT CTTCTCTCGAGGAGGCGGCCGACACGATTGCTTCAGCAGTTGGGCCCTCG GGTCCGAACAGAGACTACCTTTTTTCTCTCTCAGAGTACCTGCAGAAGGT GA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17148:1851..3002-

>mRNA_L-elsbetiae_contig17148.4765.1 ID=mRNA_L-elsbetiae_contig17148.4765.1|Name=mRNA_L-elsbetiae_contig17148.4765.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=804bp|location=Sequence derived from alignment at L-elsbetiae_contig17148:1851..3002- (Laminarionema elsbetiae ELsaHSoW15)
AGAGCATGGACCACCGAGGCACCCCGGAGTCGCCGGGCTTGGTGGCGACT
CTCATTTCTGATTCTGATCTCGAGAGAGCATGGACCACCGAGGCACCCCG
GAGTCGCCGGGCTTGGTGGCGACTCTCATTTCTGATTCTGATCTCGAGGC
TCTTGGAGAGCGTTCAGCCGGCGACCCGCCTTCGAGGACCCACGGCGTTG
CGTATCTTGTACCCGACGACAAGGCAGAGCAAGTCCTCGCCGGGCTGGAC
TTTAGGGAAAAGGGAGGATACACGAGAGCGACGGTCGATGTGTTTCCGAC
AGGCTCTTGGAGAGCGTTCAGCCGGCGACCCGCCTTCGAGGACCCACGGC
GTTGCGTATCTTGTACCCGACGACAAGGCAGAGCAAGTCCTCGCCGGGCT
GGACTTTAGGGAAAAGGGAGGATACACGAGAGCGACGGTCGATGTGTTTC
CGACAGGCGGCGCAGGGGCAGCACCGACGCGAGCCTTGCTTTACACCGCG
ACCACGGACAACCCGAATTTCTCTTTGTCTTCTCTCGAGGAGGCGGCCGA
CACGATTGCTTCAGCAGTTGGGCCCTCGGGTCCGAACAGAGACTACCTTT
TTTCTCTCTCAGAGTACCTGCAGAAGGTGAGCGGCGCAGGGGCAGCACCG
ACGCGAGCCTTGCTTTACACCGCGACCACGGACAACCCGAATTTCTCTTT
GTCTTCTCTCGAGGAGGCGGCCGACACGATTGCTTCAGCAGTTGGGCCCT
CGGGTCCGAACAGAGACTACCTTTTTTCTCTCTCAGAGTACCTGCAGAAG
GTGA
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