mRNA_L-elsbetiae_contig17145.4763.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17145.4763.1
Unique NamemRNA_L-elsbetiae_contig17145.4763.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17145.4763.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17145contigL-elsbetiae_contig17145:2078..2392 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size315
Cds size309
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.6429014-UTR-L-elsbetiae_contig17145:2077..20831622815714.6429014-UTR-L-elsbetiae_contig17145:2077..2083Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17145 2078..2083 +
1691683055.1447942-UTR-L-elsbetiae_contig17145:2077..20831691683055.1447942-UTR-L-elsbetiae_contig17145:2077..2083Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17145 2078..2083 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.6592007-CDS-L-elsbetiae_contig17145:2083..23921622815714.6592007-CDS-L-elsbetiae_contig17145:2083..2392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17145 2084..2392 +
1691683055.1565864-CDS-L-elsbetiae_contig17145:2083..23921691683055.1565864-CDS-L-elsbetiae_contig17145:2083..2392Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17145 2084..2392 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17145.4763.1prot_L-elsbetiae_contig17145.4763.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17145 2084..2392 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17145.4763.1

>prot_L-elsbetiae_contig17145.4763.1 ID=prot_L-elsbetiae_contig17145.4763.1|Name=mRNA_L-elsbetiae_contig17145.4763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MPPPRPPRLLPRQPQPVTIPTPAHRPQRRRPKQPASLRRFRAKAPTLRLT
AVPAPVPSLPPLVPPPVPLPPRLMPQPRLVPQPRLVLPPPLVPPPPLLPP
PPL
back to top

mRNA from alignment at L-elsbetiae_contig17145:2078..2392+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17145.4763.1 ID=mRNA_L-elsbetiae_contig17145.4763.1|Name=mRNA_L-elsbetiae_contig17145.4763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=315bp|location=Sequence derived from alignment at L-elsbetiae_contig17145:2078..2392+ (Laminarionema elsbetiae ELsaHSoW15)
CCGCCGATGCCGCCGCCACGCCCTCCGAGGCTCCTTCCACGGCAGCCGCA
GCCTGTGACGATACCGACGCCGGCGCATCGTCCTCAGCGCCGGAGGCCGA
AACAACCTGCTTCGCTGCGGCGCTTTCGGGCGAAAGCGCCGACACTGCGT
CTGACCGCGGTGCCGGCACCGGTTCCATCGCTGCCGCCGCTGGTGCCGCC
ACCGGTTCCTCTGCCGCCGCGGCTGATGCCTCAACCGCGGCTGGTACCTC
AACCGCGGCTGGTACTTCCGCCGCCGCTGGTGCCTCCACCGCCGCTGTTG
CCTCCACCGCCGCTG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17145:2078..2392+

>mRNA_L-elsbetiae_contig17145.4763.1 ID=mRNA_L-elsbetiae_contig17145.4763.1|Name=mRNA_L-elsbetiae_contig17145.4763.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig17145:2078..2392+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCCGCCACGCCCTCCGAGGCTCCTTCCACGGCAGCCGCAGCCTGT
GACGATACCGACGCCGGCGCATCGTCCTCAGCGCCGGAGGCCGAAACAAC
CTGCTTCGCTGCGGCGCTTTCGGGCGAAAGCGCCGACACTGCGTCTGACC
GCGGTGCCGGCACCGGTTCCATCGCTGCCGCCGCTGGTGCCGCCACCGGT
TCCTCTGCCGCCGCGGCTGATGCCTCAACCGCGGCTGGTACCTCAACCGC
GGCTGGTACTTCCGCCGCCGCTGGTGCCTCCACCGCCGCTGTTGCCTCCA
CCGCCGCTGATGCCGCCGCCACGCCCTCCGAGGCTCCTTCCACGGCAGCC
GCAGCCTGTGACGATACCGACGCCGGCGCATCGTCCTCAGCGCCGGAGGC
CGAAACAACCTGCTTCGCTGCGGCGCTTTCGGGCGAAAGCGCCGACACTG
CGTCTGACCGCGGTGCCGGCACCGGTTCCATCGCTGCCGCCGCTGGTGCC
GCCACCGGTTCCTCTGCCGCCGCGGCTGATGCCTCAACCGCGGCTGGTAC
CTCAACCGCGGCTGGTACTTCCGCCGCCGCTGGTGCCTCCACCGCCGCTG
TTGCCTCCACCGCCGCTG
back to top