mRNA_L-elsbetiae_contig17125.4759.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17125.4759.1
Unique NamemRNA_L-elsbetiae_contig17125.4759.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig17125.4759.1 vs. uniprot
Match: A0A6H5JVR3_9PHAE (PAO protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR3_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 1.070e-33
Identity = 57/67 (85.07%), Postives = 61/67 (91.04%), Query Frame = 1
Query:    1 YTGGLVHDWVRDEPFVRGGYTYPRFGFDENTHADAAASVNGSLFFAGEHTNTPTGMTVHAAIDSGER 201
            Y GGLVHDWV+DEPFVRGGY YPR GFDE THA  AAS+NG+LFFAGEHTNTPTGMTVHAAIDSG+R
Sbjct:  472 YVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASINGTLFFAGEHTNTPTGMTVHAAIDSGDR 538          
BLAST of mRNA_L-elsbetiae_contig17125.4759.1 vs. uniprot
Match: D8LF22_ECTSI (Amine oxidase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF22_ECTSI)

HSP 1 Score: 128 bits (322), Expect = 1.320e-33
Identity = 60/73 (82.19%), Postives = 63/73 (86.30%), Query Frame = 1
Query:    1 YTGGLVHDWVRDEPFVRGGYTYPRFGFDENTHADAAASVNGSLFFAGEHTNTPTGMTVHAAIDSGERC--GVL 213
            Y GGLVHDWV+DEPFVRGGY YPR GFDE THA  AASVNG+LFFAGEHTNTPTG TVHAAIDSG+R   GVL
Sbjct:  371 YVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDRAASGVL 443          
BLAST of mRNA_L-elsbetiae_contig17125.4759.1 vs. uniprot
Match: A0A484DUS0_BRELC (Amino_oxidase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUS0_BRELC)

HSP 1 Score: 68.6 bits (166), Expect = 8.360e-12
Identity = 35/75 (46.67%), Postives = 45/75 (60.00%), Query Frame = 1
Query:    1 YTGGLVHDWVRDEPFVRGGYTYPRFGFDENTHADAAASVNGSLFFAGEHTN-TPTGMTVHAAIDSGERCGVLASK 222
            +  G   DW  DEP++RGGY YPR G  +    D AA VN  LFFAGE T     GM+VHAA+D+G R  +  ++
Sbjct:  406 FVKGTYKDWG-DEPWIRGGYAYPRVGQSDTASKDLAAPVNNRLFFAGEATAYEQPGMSVHAAVDTGTRAAMEVAR 479          
BLAST of mRNA_L-elsbetiae_contig17125.4759.1 vs. uniprot
Match: G4ZPG5_PHYSP (Amino_oxidase domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZPG5_PHYSP)

HSP 1 Score: 66.6 bits (161), Expect = 3.590e-11
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 YTGGLVHDWVRDEPFVRGGYTYPRFGFDENTHADAAASVNGSLFFAGEHTN-TPTGMTVHAAIDSGERCGVLASK 222
            +  G+  DW  DEP++ GGY +PR G  +    D AA V+  +FFAGE T     GM+VHAAID+G R  V A++
Sbjct:  286 FVRGMYKDWG-DEPWIGGGYAFPRVGQSDTASQDLAAPVDNRIFFAGEATAFEQPGMSVHAAIDTGSRASVQAAR 359          
BLAST of mRNA_L-elsbetiae_contig17125.4759.1 vs. uniprot
Match: A0A6A3LZZ9_9STRA (Amino_oxidase domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LZZ9_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 5.440e-11
Identity = 34/75 (45.33%), Postives = 46/75 (61.33%), Query Frame = 1
Query:    1 YTGGLVHDWVRDEPFVRGGYTYPRFGFDENTHADAAASVNGSLFFAGEHTN-TPTGMTVHAAIDSGERCGVLASK 222
            +  G+  DW  DEP++ GGY +PR G  +    D AA V+  +FFAGE T     GM+VHAAID+G R  V A++
Sbjct:  404 FVRGMYKDWG-DEPWIGGGYAFPRVGQSDTASQDLAAPVDNRIFFAGEATAFEQPGMSVHAAIDTGTRASVQAAR 477          
BLAST of mRNA_L-elsbetiae_contig17125.4759.1 vs. uniprot
Match: D0MQX8_PHYIT (Amino_oxidase domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MQX8_PHYIT)

HSP 1 Score: 65.9 bits (159), Expect = 6.680e-11
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 1
Query:    1 YTGGLVHDWVRDEPFVRGGYTYPRFGFDENTHADAAASVNGSLFFAGEHTN-TPTGMTVHAAIDSGER 201
            Y  G   DW  DEP++RGGY +PR G  +    D AA V G +FFAGE T     GM+VHAA+D+G R
Sbjct:  281 YVKGTYKDWG-DEPWIRGGYAFPRVGQSDTASYDLAAPVAGRIFFAGEATAFEQPGMSVHAAVDTGAR 347          
BLAST of mRNA_L-elsbetiae_contig17125.4759.1 vs. uniprot
Match: W2NUE5_PHYPR (Amino_oxidase domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2NUE5_PHYPR)

HSP 1 Score: 65.9 bits (159), Expect = 7.440e-11
Identity = 33/68 (48.53%), Postives = 43/68 (63.24%), Query Frame = 1
Query:    1 YTGGLVHDWVRDEPFVRGGYTYPRFGFDENTHADAAASVNGSLFFAGEHTN-TPTGMTVHAAIDSGER 201
            +  G   DW  DEP++RGGY YPR G  +    D AA V+G +FFAGE T     GM+VH+A+D+G R
Sbjct:  402 FVKGTYKDWG-DEPWIRGGYAYPRVGQSDTASYDLAAPVDGRIFFAGEATAFEQPGMSVHSAVDTGTR 468          
BLAST of mRNA_L-elsbetiae_contig17125.4759.1 vs. uniprot
Match: A0A0P1AT21_PLAHL (Amine oxidase-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AT21_PLAHL)

HSP 1 Score: 63.5 bits (153), Expect = 4.760e-10
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 YTGGLVHDWVRDEPFVRGGYTYPRFGFDENTHADAAASVNGSLFFAGEHTN-TPTGMTVHAAIDSGER 201
            +  G+  DW  DEP++ GGY YPR G  ++  ++ AA V+  LFFAGE T     GM+VHAA+D+G R
Sbjct:  340 FVKGIYKDWG-DEPWICGGYAYPRVGQSDSASSELAAPVDNRLFFAGEATAFEQPGMSVHAAVDTGTR 406          
BLAST of mRNA_L-elsbetiae_contig17125.4759.1 vs. uniprot
Match: A0A3M6VMM2_9STRA (Amino_oxidase domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VMM2_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.100e-8
Identity = 29/60 (48.33%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   34 DEPFVRGGYTYPRFGFDENTHADAAASVNGSLFFAGEHTN-TPTGMTVHAAIDSGERCGV 210
            DEP++ GGY +PR G  ++   D AA+V+  +FFAGE T     GM+VHAA+D+G R  V
Sbjct:  412 DEPWIGGGYAFPRVGQSDSASEDLAAAVDNRVFFAGEATAFEQPGMSVHAAVDTGTRASV 471          
BLAST of mRNA_L-elsbetiae_contig17125.4759.1 vs. uniprot
Match: A0A225X5D8_9STRA (Amino_oxidase domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225X5D8_9STRA)

HSP 1 Score: 58.5 bits (140), Expect = 2.700e-8
Identity = 31/74 (41.89%), Postives = 45/74 (60.81%), Query Frame = 1
Query:    1 YTGGLVHDWVRDEPFVRGGYTYPRFGFDENTHADAAASVNGSLFFAGEHTN-TPTGMTVHAAIDSGERCGVLAS 219
            +  G+  D+  DEP++ GGY +PR G  ++   D AA ++  +FFAGE T     GM+VHAA+D+G R  V  S
Sbjct:  282 FVKGMYKDFG-DEPWIGGGYAFPRVGQLDSASFDLAAPIDDRIFFAGEATAFEQPGMSVHAAVDTGTRASVQVS 354          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17125.4759.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
A0A6H5JVR3_9PHAE1.070e-3385.07PAO protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D8LF22_ECTSI1.320e-3382.19Amine oxidase-like protein n=1 Tax=Ectocarpus sili... [more]
A0A484DUS0_BRELC8.360e-1246.67Amino_oxidase domain-containing protein n=1 Tax=Br... [more]
G4ZPG5_PHYSP3.590e-1145.33Amino_oxidase domain-containing protein n=1 Tax=Ph... [more]
A0A6A3LZZ9_9STRA5.440e-1145.33Amino_oxidase domain-containing protein n=4 Tax=Ph... [more]
D0MQX8_PHYIT6.680e-1150.00Amino_oxidase domain-containing protein n=2 Tax=Ph... [more]
W2NUE5_PHYPR7.440e-1148.53Amino_oxidase domain-containing protein n=10 Tax=P... [more]
A0A0P1AT21_PLAHL4.760e-1047.06Amine oxidase-like protein n=1 Tax=Plasmopara hals... [more]
A0A3M6VMM2_9STRA1.100e-848.33Amino_oxidase domain-containing protein n=1 Tax=Pe... [more]
A0A225X5D8_9STRA2.700e-841.89Amino_oxidase domain-containing protein n=1 Tax=Ph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17125contigL-elsbetiae_contig17125:3276..3497 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score129.4
Seed ortholog evalue6.9e-28
Seed eggNOG ortholog2880.D8LF22
KEGG koko:K19413
Hectar predicted targeting categoryother localisation
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG1231@1,KOG0029@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size222
Cds size222
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815714.246545-CDS-L-elsbetiae_contig17125:3275..34971622815714.246545-CDS-L-elsbetiae_contig17125:3275..3497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17125 3276..3497 +
1691683054.8963842-CDS-L-elsbetiae_contig17125:3275..34971691683054.8963842-CDS-L-elsbetiae_contig17125:3275..3497Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17125 3276..3497 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17125.4759.1prot_L-elsbetiae_contig17125.4759.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17125 3276..3497 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17125.4759.1

>prot_L-elsbetiae_contig17125.4759.1 ID=prot_L-elsbetiae_contig17125.4759.1|Name=mRNA_L-elsbetiae_contig17125.4759.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=74bp
YTGGLVHDWVRDEPFVRGGYTYPRFGFDENTHADAAASVNGSLFFAGEHT
NTPTGMTVHAAIDSGERCGVLASK
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mRNA from alignment at L-elsbetiae_contig17125:3276..3497+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17125.4759.1 ID=mRNA_L-elsbetiae_contig17125.4759.1|Name=mRNA_L-elsbetiae_contig17125.4759.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=222bp|location=Sequence derived from alignment at L-elsbetiae_contig17125:3276..3497+ (Laminarionema elsbetiae ELsaHSoW15)
TACACCGGCGGCTTGGTGCACGATTGGGTCAGAGATGAGCCGTTTGTGCG GGGCGGTTACACCTACCCGAGGTTCGGCTTCGACGAGAATACGCACGCTG ATGCAGCAGCAAGCGTCAACGGGTCTCTGTTTTTCGCCGGGGAGCACACG AACACGCCGACAGGGATGACAGTCCACGCGGCGATTGACTCGGGGGAAAG GTGCGGCGTGCTTGCTTCGAAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17125:3276..3497+

>mRNA_L-elsbetiae_contig17125.4759.1 ID=mRNA_L-elsbetiae_contig17125.4759.1|Name=mRNA_L-elsbetiae_contig17125.4759.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=444bp|location=Sequence derived from alignment at L-elsbetiae_contig17125:3276..3497+ (Laminarionema elsbetiae ELsaHSoW15)
TACACCGGCGGCTTGGTGCACGATTGGGTCAGAGATGAGCCGTTTGTGCG
GGGCGGTTACACCTACCCGAGGTTCGGCTTCGACGAGAATACGCACGCTG
ATGCAGCAGCAAGCGTCAACGGGTCTCTGTTTTTCGCCGGGGAGCACACG
AACACGCCGACAGGGATGACAGTCCACGCGGCGATTGACTCGGGGGAAAG
GTGCGGCGTGCTTGCTTCGAAATACACCGGCGGCTTGGTGCACGATTGGG
TCAGAGATGAGCCGTTTGTGCGGGGCGGTTACACCTACCCGAGGTTCGGC
TTCGACGAGAATACGCACGCTGATGCAGCAGCAAGCGTCAACGGGTCTCT
GTTTTTCGCCGGGGAGCACACGAACACGCCGACAGGGATGACAGTCCACG
CGGCGATTGACTCGGGGGAAAGGTGCGGCGTGCTTGCTTCGAAA
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