mRNA_L-elsbetiae_contig17114.4756.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17114.4756.1
Unique NamemRNA_L-elsbetiae_contig17114.4756.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17114.4756.1 vs. uniprot
Match: D7FYY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY8_ECTSI)

HSP 1 Score: 340 bits (873), Expect = 5.500e-114
Identity = 170/193 (88.08%), Postives = 178/193 (92.23%), Query Frame = 1 
Query:    1 LRLQPGWFAVLPLELTNPCPLVVGQIVSVESGGEHGGEVLINWFAPVSRKKCRRSRYGRGVWSQEFLKQDNKLTPDQSTESVKAVCFTFPSLLQSGKLPSGVWAAVEESVPSSSLEEVDTDNSDSDADDVEGEGRAGGCLGEEQSGLARSPTIPPHTRATDPIQHPSRSATPSAPPAPDVRLTAAHFRPRRGQ 579
            LRLQPGWFAVLPLE+TN CPLVVGQIVSVESGGE+GGEVLINWFAPVSRKKCRRSRYGRGVWSQ+FLKQDNKLTPDQSTES+K+VCFTF SLLQSGKLPSGVWAAVEESVPSSSLEE +TD+SDSDAD VEG G AGGC GEEQSGLA SPTIPPHTR T PI HPSRS + SAPPAP VRLTAAHFRPRR Q
Sbjct:  184 LRLQPGWFAVLPLEMTNTCPLVVGQIVSVESGGENGGEVLINWFAPVSRKKCRRSRYGRGVWSQQFLKQDNKLTPDQSTESIKSVCFTFQSLLQSGKLPSGVWAAVEESVPSSSLEEAETDDSDSDADGVEGGGAAGGCRGEEQSGLAPSPTIPPHTRDTGPIPHPSRSDSQSAPPAPGVRLTAAHFRPRRTQ 376
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BLAST of mRNA_L-elsbetiae_contig17114.4756.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE)

HSP 1 Score: 258 bits (658), Expect = 6.660e-81
Identity = 134/197 (68.02%), Postives = 153/197 (77.66%), Query Frame = 1 
Query:    1 LRLQPGWFAVLPLELTNPCPLVVGQIVSVESGGEHGGEVLINWFAPVSRKKCRRSRYGRGVWSQEFLKQDNKLTPDQSTESVKAVCFTFPSLLQSGKLPSGVWAAVEESVPSSSLEEVDTDNSDSDADDVEGEGRAGGCLGEEQSGLARSPTIPPHTRATDPIQHPSRSATPSA--PPAPDVRLTAAHFRPRRGQGR 585
            L LQPGWFAV PLEL+NPCPLVVG+IVSV+    +GGE+ + WF+P SRKKCRRS+YGRGVWSQEFLK+ NKLT DQ TESV+AVCFTFPSLLQSGKLPS VW AVEESVP+SSLEE     SDSD ++ +G   A G  G E+S + + PT PP  RAT PI +P  SATP+   PPAP V LTAAHFRPRRGQ R
Sbjct:  229 LHLQPGWFAVFPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQEFLKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESVPTSSLEE-----SDSDVEEEQGGEWAAGDPGGERSAIVQPPTAPPPERATTPIPNPRSSATPALRPPPAPGVLLTAAHFRPRRGQER 420
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BLAST of mRNA_L-elsbetiae_contig17114.4756.1 vs. uniprot
Match: A0A6H5KD34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KD34_9PHAE)

HSP 1 Score: 229 bits (583), Expect = 1.540e-70
Identity = 118/173 (68.21%), Postives = 134/173 (77.46%), Query Frame = 1 
Query:    1 LRLQPGWFAVLPLELTNPCPLVVGQIVSVESGGEHGGEVLINWFAPVSRKKCRRSRYGRGVWSQEFLKQDNKLTPDQSTESVKAVCFTFPSLLQSGKLPSGVWAAVEESVPSSSLEEVDTDNSDSDADDVEGEGRAGGCLGEEQSGLARSPTIPPHTRATDPIQHPSRSATPS 519
            L LQPGWFAV PLEL+NPCPLVVG+IVSV+    +GGE+ + WF+P SRKKCRRS+YGRGVWSQE LK+ NKLT DQ TESVKAVCFTFPSLLQSGKLPS VW AVEESVP SSLEE     SDSD ++ +   RAGG LG E+S   + PT PP  RAT PI +P  SATP+
Sbjct:  180 LHLQPGWFAVFPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQENLKEGNKLTADQGTESVKAVCFTFPSLLQSGKLPSAVWDAVEESVPISSLEE-----SDSDIEEEQRRERAGGDLGGERSAKVQPPTAPPPERATTPIPNPRSSATPA 347
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BLAST of mRNA_L-elsbetiae_contig17114.4756.1 vs. uniprot
Match: A0A6H5K4U0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K4U0_9PHAE)

HSP 1 Score: 208 bits (530), Expect = 7.310e-65
Identity = 112/175 (64.00%), Postives = 130/175 (74.29%), Query Frame = 1 
Query:   67 VGQIVSVESGGEHGGEVLINWFAPVSRKKCRRSRYGRGVWSQEFLKQDNKLTPDQSTESVKAVCFTFPSLLQSGKLPSGVWAAVEESVPSSSLEEVDTDNSDSDADDVEGEGRAGGCLGEEQSGLARSPTIPPHTRATDPIQHPSRSATPSA--PPAPDVRLTAAHFRPRRGQGR 585
            V  + SV+    +GGE+ + WF+P SRKKCRRS+YGRGVWSQEFLK+ NKLT DQ TESV+AVCFTFPSLLQSGKLPS VW AVEESVP+SSLEE     SDSD ++ +G   A G  G E+S + + PT PP  RAT PI +P  SATP+   PPAP V LTAAHFRPRRGQ R
Sbjct:    4 VTSLFSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQEFLKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESVPTSSLEE-----SDSDVEEEQGGEWAAGDPGGERSAIVQPPTAPPPERATTPIPNPRSSATPALRPPPAPGVLLTAAHFRPRRGQER 173
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BLAST of mRNA_L-elsbetiae_contig17114.4756.1 vs. uniprot
Match: A0A6H5K3A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A9_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 9.140e-56
Identity = 87/114 (76.32%), Postives = 97/114 (85.09%), Query Frame = 1 
Query:    1 LRLQPGWFAVLPLELTNPCPLVVGQIVSVESGGEHGGEVLINWFAPVSRKKCRRSRYGRGVWSQEFLKQDNKLTPDQSTESVKAVCFTFPSLLQSGKLPSGVWAAVEESVPSSS 342
            L LQPGWFAV PLEL+NPCPLVVG+IVSV+    +GGE+ + WF+P SRKKCRRS+YGRGVWSQEFLK+ NKLT DQ TESV+AVCFTFPSLLQSGKLPS VW AVEES   SS
Sbjct:   77 LHLQPGWFAVFPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQEFLKEGNKLTADQGTESVEAVCFTFPSLLQSGKLPSAVWDAVEESQGKSS 190
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BLAST of mRNA_L-elsbetiae_contig17114.4756.1 vs. uniprot
Match: A0A6H5J810_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J810_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 6.870e-37
Identity = 64/85 (75.29%), Postives = 73/85 (85.88%), Query Frame = 1 
Query:    1 LRLQPGWFAVLPLELTNPCPLVVGQIVSVESGGEHGGEVLINWFAPVSRKKCRRSRYGRGVWSQEFLKQDNKLTPDQSTESVKAV 255
            L LQPGWFAV PLEL+NPCPLVVG+IVSV+    +GGE+ + WF+P SRKKCRRS+YGRGVWSQEFLK+ NKLT DQ TESVKAV
Sbjct:  194 LHLQPGWFAVFPLELSNPCPLVVGKIVSVDLSAGNGGELTVTWFSPASRKKCRRSKYGRGVWSQEFLKEGNKLTADQGTESVKAV 278
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17114.4756.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7FYY8_ECTSI5.500e-11488.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIQ0_9PHAE6.660e-8168.02Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KD34_9PHAE1.540e-7068.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K4U0_9PHAE7.310e-6564.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3A9_9PHAE9.140e-5676.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J810_9PHAE6.870e-3775.29Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17114contigL-elsbetiae_contig17114:901..1647 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-19_003010.1
Exons1
Model size748
Cds size594
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.8967664-CDS-L-elsbetiae_contig17114:900..14941622815713.8967664-CDS-L-elsbetiae_contig17114:900..1494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17114 901..1494 +
1691683054.655743-CDS-L-elsbetiae_contig17114:900..14941691683054.655743-CDS-L-elsbetiae_contig17114:900..1494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17114 901..1494 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.908077-UTR-L-elsbetiae_contig17114:1494..16471622815713.908077-UTR-L-elsbetiae_contig17114:1494..1647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17114 1495..1647 +
1691683054.669745-UTR-L-elsbetiae_contig17114:1494..16471691683054.669745-UTR-L-elsbetiae_contig17114:1494..1647Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17114 1495..1647 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17114.4756.1prot_L-elsbetiae_contig17114.4756.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17114 901..1494 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17114.4756.1

>prot_L-elsbetiae_contig17114.4756.1 ID=prot_L-elsbetiae_contig17114.4756.1|Name=mRNA_L-elsbetiae_contig17114.4756.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=198bp
LRLQPGWFAVLPLELTNPCPLVVGQIVSVESGGEHGGEVLINWFAPVSRK
KCRRSRYGRGVWSQEFLKQDNKLTPDQSTESVKAVCFTFPSLLQSGKLPS
GVWAAVEESVPSSSLEEVDTDNSDSDADDVEGEGRAGGCLGEEQSGLARS
PTIPPHTRATDPIQHPSRSATPSAPPAPDVRLTAAHFRPRRGQGRGQ*
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mRNA from alignment at L-elsbetiae_contig17114:901..1647+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17114.4756.1 ID=mRNA_L-elsbetiae_contig17114.4756.1|Name=mRNA_L-elsbetiae_contig17114.4756.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=747bp|location=Sequence derived from alignment at L-elsbetiae_contig17114:901..1647+ (Laminarionema elsbetiae ELsaHSoW15)
TTGCGCTTGCAGCCAGGGTGGTTTGCCGTTCTGCCTTTGGAGTTGACGAA
TCCTTGCCCACTGGTAGTTGGCCAAATAGTAAGCGTGGAATCCGGCGGGG
AGCATGGGGGTGAGGTGCTCATCAATTGGTTTGCGCCTGTTTCTCGTAAA
AAATGCCGTCGGTCGAGGTACGGGAGGGGCGTATGGTCGCAAGAGTTTCT
AAAGCAGGACAACAAGCTCACACCGGATCAGAGTACGGAGTCGGTCAAAG
CCGTATGTTTCACCTTCCCTTCTTTGCTTCAGAGCGGGAAACTGCCAAGT
GGGGTGTGGGCGGCTGTTGAAGAGAGCGTTCCGTCTTCCTCTCTGGAGGA
AGTGGATACAGACAACAGTGATTCGGATGCAGACGACGTTGAGGGGGAGG
GGCGAGCGGGGGGGTGCCTAGGGGAAGAGCAATCAGGCTTGGCTCGATCT
CCCACTATTCCACCTCATACGAGGGCCACCGACCCGATCCAGCACCCTTC
TCGCAGTGCCACCCCAAGTGCTCCTCCAGCGCCTGACGTACGGTTGACCG
CTGCCCACTTCAGACCACGTAGGGGACAAGGGAGAGGTCAGTAGTCGGAC
GACTCGTTACCGGTGTATGCATGGGCTTGTAGATGCGATAAAAGGTGAAC
TTTGCGTGAAATTCCGCGTAGTGACTTTTGTCTGTCGCAGGCACGGTGAC
TGCCACGACCGCGTCTTCCTGGTGGTGTGCTCATTGTTCGTGACTTC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17114:901..1647+

>mRNA_L-elsbetiae_contig17114.4756.1 ID=mRNA_L-elsbetiae_contig17114.4756.1|Name=mRNA_L-elsbetiae_contig17114.4756.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1188bp|location=Sequence derived from alignment at L-elsbetiae_contig17114:901..1647+ (Laminarionema elsbetiae ELsaHSoW15)
TTGCGCTTGCAGCCAGGGTGGTTTGCCGTTCTGCCTTTGGAGTTGACGAA
TCCTTGCCCACTGGTAGTTGGCCAAATAGTAAGCGTGGAATCCGGCGGGG
AGCATGGGGGTGAGGTGCTCATCAATTGGTTTGCGCCTGTTTCTCGTAAA
AAATGCCGTCGGTCGAGGTACGGGAGGGGCGTATGGTCGCAAGAGTTTCT
AAAGCAGGACAACAAGCTCACACCGGATCAGAGTACGGAGTCGGTCAAAG
CCGTATGTTTCACCTTCCCTTCTTTGCTTCAGAGCGGGAAACTGCCAAGT
GGGGTGTGGGCGGCTGTTGAAGAGAGCGTTCCGTCTTCCTCTCTGGAGGA
AGTGGATACAGACAACAGTGATTCGGATGCAGACGACGTTGAGGGGGAGG
GGCGAGCGGGGGGGTGCCTAGGGGAAGAGCAATCAGGCTTGGCTCGATCT
CCCACTATTCCACCTCATACGAGGGCCACCGACCCGATCCAGCACCCTTC
TCGCAGTGCCACCCCAAGTGCTCCTCCAGCGCCTGACGTACGGTTGACCG
CTGCCCACTTCAGACCACGTAGGGGACAAGGGAGAGGTCAGTAGTTGCGC
TTGCAGCCAGGGTGGTTTGCCGTTCTGCCTTTGGAGTTGACGAATCCTTG
CCCACTGGTAGTTGGCCAAATAGTAAGCGTGGAATCCGGCGGGGAGCATG
GGGGTGAGGTGCTCATCAATTGGTTTGCGCCTGTTTCTCGTAAAAAATGC
CGTCGGTCGAGGTACGGGAGGGGCGTATGGTCGCAAGAGTTTCTAAAGCA
GGACAACAAGCTCACACCGGATCAGAGTACGGAGTCGGTCAAAGCCGTAT
GTTTCACCTTCCCTTCTTTGCTTCAGAGCGGGAAACTGCCAAGTGGGGTG
TGGGCGGCTGTTGAAGAGAGCGTTCCGTCTTCCTCTCTGGAGGAAGTGGA
TACAGACAACAGTGATTCGGATGCAGACGACGTTGAGGGGGAGGGGCGAG
CGGGGGGGTGCCTAGGGGAAGAGCAATCAGGCTTGGCTCGATCTCCCACT
ATTCCACCTCATACGAGGGCCACCGACCCGATCCAGCACCCTTCTCGCAG
TGCCACCCCAAGTGCTCCTCCAGCGCCTGACGTACGGTTGACCGCTGCCC
ACTTCAGACCACGTAGGGGACAAGGGAGAGGTCAGTAG
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