mRNA_L-elsbetiae_contig17114.4755.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17114.4755.1
Unique NamemRNA_L-elsbetiae_contig17114.4755.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17114.4755.1 vs. uniprot
Match: D7FYY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYY8_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 9.030e-20
Identity = 70/81 (86.42%), Postives = 72/81 (88.89%), Query Frame = 1 
Query:  103 AKRSKIVCEMNLSVELLRETGTKDWDLPSLTRTAGLDTDSSDXXXXXXXXXXXXXXXXXX-----ALDTMSPEALPNGPLT 330
            AKRS+IV EMNLSVELLRETGTKDWDLPSLTRTAGL TDSSD  XXXXXXXXXXXXXXXX     ALDTMSPEALP+GPLT
Sbjct:   93 AKRSEIVREMNLSVELLRETGTKDWDLPSLTRTAGLHTDSSDDEXXXXXXXXXXXXXXXXXXXXXALDTMSPEALPDGPLT 173
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BLAST of mRNA_L-elsbetiae_contig17114.4755.1 vs. uniprot
Match: A0A6H5KIQ0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIQ0_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 1.090e-13
Identity = 61/75 (81.33%), Postives = 68/75 (90.67%), Query Frame = 1 
Query:  103 AKRSKIVCEMNLSVELLRETGTKDWDLPSLTRTAGLDTDSSDXXXXXXXXXXXXXXXXXXALDTMSPEALPNGPL 327
            AKR++ + EMNLSV+LLRE GTKDWDLPSLT  AGLD DSSDXXXXXXXXXXXXXXXXXXALDT+SP+ALP+G L
Sbjct:  144 AKRNEYIREMNLSVQLLRERGTKDWDLPSLTSAAGLD-DSSDXXXXXXXXXXXXXXXXXXALDTVSPQALPDGSL 217
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BLAST of mRNA_L-elsbetiae_contig17114.4755.1 vs. uniprot
Match: A0A6H5K3A9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3A9_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 1.230e-11
Identity = 57/66 (86.36%), Postives = 61/66 (92.42%), Query Frame = 1 
Query:  130 MNLSVELLRETGTKDWDLPSLTRTAGLDTDSSDXXXXXXXXXXXXXXXXXXALDTMSPEALPNGPL 327
            MNLSV+LLRE GTKDWDLPSLT  AGLD DSSDXXXXXXXXXXXXXXXXXXALDT+SP+ALP+G L
Sbjct:    1 MNLSVQLLRERGTKDWDLPSLTSAAGLD-DSSDXXXXXXXXXXXXXXXXXXALDTVSPQALPDGSL 65
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BLAST of mRNA_L-elsbetiae_contig17114.4755.1 vs. uniprot
Match: A0A6H5J810_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J810_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.800e-5
Identity = 48/55 (87.27%), Postives = 51/55 (92.73%), Query Frame = 1 
Query:  163 GTKDWDLPSLTRTAGLDTDSSDXXXXXXXXXXXXXXXXXXALDTMSPEALPNGPL 327
            GTKDWDLPSLT  AGLD DSSDXXXXXXXXXXXXXXXXXXALDT+SP+ALP+G L
Sbjct:  129 GTKDWDLPSLTTAAGLD-DSSDXXXXXXXXXXXXXXXXXXALDTVSPQALPDGSL 182
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17114.4755.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FYY8_ECTSI9.030e-2086.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KIQ0_9PHAE1.090e-1381.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K3A9_9PHAE1.230e-1186.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J810_9PHAE2.800e-587.27Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17114contigL-elsbetiae_contig17114:49..870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size332
Cds size201
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17114.4755.1prot_L-elsbetiae_contig17114.4755.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17114 670..870 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.83947-UTR-L-elsbetiae_contig17114:48..1451622815713.83947-UTR-L-elsbetiae_contig17114:48..145Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17114 49..145 +
1691683054.6219866-UTR-L-elsbetiae_contig17114:48..1451691683054.6219866-UTR-L-elsbetiae_contig17114:48..145Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17114 49..145 +
1622815713.8551848-UTR-L-elsbetiae_contig17114:637..6691622815713.8551848-UTR-L-elsbetiae_contig17114:637..669Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17114 638..669 +
1691683054.6320512-UTR-L-elsbetiae_contig17114:637..6691691683054.6320512-UTR-L-elsbetiae_contig17114:637..669Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17114 638..669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.8652585-CDS-L-elsbetiae_contig17114:669..8701622815713.8652585-CDS-L-elsbetiae_contig17114:669..870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17114 670..870 +
1691683054.6433387-CDS-L-elsbetiae_contig17114:669..8701691683054.6433387-CDS-L-elsbetiae_contig17114:669..870Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17114 670..870 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17114.4755.1

>prot_L-elsbetiae_contig17114.4755.1 ID=prot_L-elsbetiae_contig17114.4755.1|Name=mRNA_L-elsbetiae_contig17114.4755.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=67bp
MNLSVELLRETGTKDWDLPSLTRTAGLDTDSSDDESSDDESSGGDGKGDS
GALDTMSPEALPNGPLT
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mRNA from alignment at L-elsbetiae_contig17114:49..870+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17114.4755.1 ID=mRNA_L-elsbetiae_contig17114.4755.1|Name=mRNA_L-elsbetiae_contig17114.4755.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig17114:49..870+ (Laminarionema elsbetiae ELsaHSoW15)
CGCTGGGGTAGACCTGTGCAGATGTAGTCGGCTTGGTCGCAGAGAGTGAA
CGGCGAGCGGTCATCATGGTCTTCGGACTTGTTCGTGGGCATGTAAAGTT
ATGTGTCTTCTGTTGGTAGTATTGGTTGTCTTGTGTGCTTGTTTTCTGCA
TTTACGAACGGTTTTTCGTCGCATACATACAGCGGTTTTTATATTCCCCC
TCCCTCCGTGAGACCGAAAACTGTCTTTTTACTCTCCCCCGAGCCCAAGA
TGACGTTTTCCGCACGATTTTCTGGTGTCCTCCCGCCTCTACGATGTCCT
CCGTGTGTATGTCATTACAAGTCGATCCGAGGTTACCTCTTTAGCTTTTT
TTGACAGGGAGTGGGAGAATAATACGATATTCGTGGTGTTTCCATTACCT
GTTGCGAGGGCGATAGGCCGAACGCGGCCCGAAGTTAATTTCCGGAAAGG
GTAGGGTATCTGTCAACGACGCCTTTCGCTCCGTTTGCTCTTGTCGTCCC
TCGTGGTGAACCAATAGCCAACCCCACACCAACCGAACCCTGTGAAACAT
TACGTGCATGTATCGACGCCCTTCTTTCTGCCGATGTAGATCTTGCGAAA
CGAAGCAAGATTGTCTGCGAGATGAACCTCTCGGTTGAGCTGCTGCGTGA
AACGGGGACGAAGGACTGGGATCTTCCGAGTTTGACGAGAACAGCTGGGC
TTGACACCGACAGCTCGGACGACGAAAGCTCGGACGACGAGAGCTCCGGT
GGCGATGGCAAGGGTGACAGCGGAGCTCTGGACACCATGTCGCCGGAGGC
ATTGCCGAATGGGCCACTGACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17114:49..870+

>mRNA_L-elsbetiae_contig17114.4755.1 ID=mRNA_L-elsbetiae_contig17114.4755.1|Name=mRNA_L-elsbetiae_contig17114.4755.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=402bp|location=Sequence derived from alignment at L-elsbetiae_contig17114:49..870+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAACCTCTCGGTTGAGCTGCTGCGTGAAACGGGGACGAAGGACTGGGA
TCTTCCGAGTTTGACGAGAACAGCTGGGCTTGACACCGACAGCTCGGACG
ACGAAAGCTCGGACGACGAGAGCTCCGGTGGCGATGGCAAGGGTGACAGC
GGAGCTCTGGACACCATGTCGCCGGAGGCATTGCCGAATGGGCCACTGAC
AATGAACCTCTCGGTTGAGCTGCTGCGTGAAACGGGGACGAAGGACTGGG
ATCTTCCGAGTTTGACGAGAACAGCTGGGCTTGACACCGACAGCTCGGAC
GACGAAAGCTCGGACGACGAGAGCTCCGGTGGCGATGGCAAGGGTGACAG
CGGAGCTCTGGACACCATGTCGCCGGAGGCATTGCCGAATGGGCCACTGA
CA
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