mRNA_L-elsbetiae_contig17103.4751.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17103.4751.1
Unique NamemRNA_L-elsbetiae_contig17103.4751.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17103.4751.1 vs. uniprot
Match: R1D9K2_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1D9K2_EMIHU)

HSP 1 Score: 59.3 bits (142), Expect = 1.290e-6
Identity = 52/129 (40.31%), Postives = 62/129 (48.06%), Query Frame = 2 
Query:   86 CVNDPECADGGMGCNAQGDLLCRFCGSEGTEFGDVYGPCRD--PDEPTPXXXXXXXXXIDPDR-DECDA-PCKDNPNADF--PXFDDPSC--GGDSDLLGCNAFGSPFCRFCDFPG-ALFECPFLTGTP 445
            C+ DP CA+GG+GCNA G  L RFCG     FG +Y PC    P  P P           P+R D+C A  C     A+F    + D SC  GG    LGCNA G   CRFC F   +   CP    +P
Sbjct:  489 CIYDPTCAEGGLGCNAAGHFLWRFCG-----FG-LYPPCPGGPPSAPAPPFR--------PERIDDCKAGTC----TANFLETCYFDRSCARGGG---LGCNAGGKTACRFCGFGAYSTVPCPMCDDSP 596
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17103.4751.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
R1D9K2_EMIHU1.290e-640.31Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17103contigL-elsbetiae_contig17103:977..1672 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size696
Cds size696
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815713.2128286-CDS-L-elsbetiae_contig17103:976..16721622815713.2128286-CDS-L-elsbetiae_contig17103:976..1672Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17103 977..1672 +
1691683054.1879618-CDS-L-elsbetiae_contig17103:976..16721691683054.1879618-CDS-L-elsbetiae_contig17103:976..1672Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17103 977..1672 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17103.4751.1prot_L-elsbetiae_contig17103.4751.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17103 977..1672 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17103.4751.1

>prot_L-elsbetiae_contig17103.4751.1 ID=prot_L-elsbetiae_contig17103.4751.1|Name=mRNA_L-elsbetiae_contig17103.4751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=232bp
HGVSRERKAGAARGGGVRQRLPVPRVRPLRERPRVRRRGYGVQRAGGSAV
PLLRQRRDGVRRRVRAVPGPGRADTGAGAHAWADHRPRPRRVRRPLQGQP
ERRLPVLRRPVVRRRLRPARLQRLRQPLLSVLRLPGSPLRVPVPDGDPGP
LLRRYDCCFSGPLLRRYDCCFPGPHRRRDRCCRYPRGLDGHADASPVPRR
PRDECHNPCAADAAADCPHLRPRRQCLDGSPD
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mRNA from alignment at L-elsbetiae_contig17103:977..1672+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17103.4751.1 ID=mRNA_L-elsbetiae_contig17103.4751.1|Name=mRNA_L-elsbetiae_contig17103.4751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=696bp|location=Sequence derived from alignment at L-elsbetiae_contig17103:977..1672+ (Laminarionema elsbetiae ELsaHSoW15)
CACGGCGTCAGCCGGGAACGGAAGGCGGGGGCTGCAAGAGGAGGAGGAGT
GCGACAGCGACTGCCTGTTCCGCGAGTCCGACCGCTGCGTGAACGACCCC
GAGTGCGCCGACGGGGGTATGGGGTGCAACGCGCAGGGGGATCTGCTGTG
CCGCTTCTGCGGCAGCGAAGGGACGGAGTTCGGCGACGTGTACGGGCCGT
GCCGGGACCCGGACGAGCCGACACCGGCGCCGGTGCCCACGCCTGGGCCG
ACCATAGACCCCGACCGCGACGAGTGCGACGCCCCCTGCAAGGACAACCC
GAACGCCGACTTCCCGTGCTTCGACGACCCGTCGTGCGGCGGCGACTCCG
ACCTGCTCGGCTGCAACGCCTTCGGCAGCCCCTTTTGTCGGTTCTGCGAC
TTCCCGGGAGCCCTCTTCGAGTGCCCGTTCCTGACGGGGACCCCGGCCCC
CTCCTCCGCCGGTACGATTGTTGCTTCTCCGGCCCCCTCCTCCGCCGGTA
CGATTGTTGCTTCCCCGGCCCCCACCGCCGCCGGGACCGGTGTTGTCGGT
ACCCCCGCGGGCTCGACGGCCATGCGGACGCCAGCCCCGTCCCTCGCAGA
CCGAGAGACGAATGTCACAACCCTTGCGCCGCTGACGCCGCCGCCGACTG
CCCCCACCTTCGCCCCCGTCGCCAATGTCTCGACGGCAGCCCCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17103:977..1672+

>mRNA_L-elsbetiae_contig17103.4751.1 ID=mRNA_L-elsbetiae_contig17103.4751.1|Name=mRNA_L-elsbetiae_contig17103.4751.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1392bp|location=Sequence derived from alignment at L-elsbetiae_contig17103:977..1672+ (Laminarionema elsbetiae ELsaHSoW15)
CACGGCGTCAGCCGGGAACGGAAGGCGGGGGCTGCAAGAGGAGGAGGAGT
GCGACAGCGACTGCCTGTTCCGCGAGTCCGACCGCTGCGTGAACGACCCC
GAGTGCGCCGACGGGGGTATGGGGTGCAACGCGCAGGGGGATCTGCTGTG
CCGCTTCTGCGGCAGCGAAGGGACGGAGTTCGGCGACGTGTACGGGCCGT
GCCGGGACCCGGACGAGCCGACACCGGCGCCGGTGCCCACGCCTGGGCCG
ACCATAGACCCCGACCGCGACGAGTGCGACGCCCCCTGCAAGGACAACCC
GAACGCCGACTTCCCGTGCTTCGACGACCCGTCGTGCGGCGGCGACTCCG
ACCTGCTCGGCTGCAACGCCTTCGGCAGCCCCTTTTGTCGGTTCTGCGAC
TTCCCGGGAGCCCTCTTCGAGTGCCCGTTCCTGACGGGGACCCCGGCCCC
CTCCTCCGCCGGTACGATTGTTGCTTCTCCGGCCCCCTCCTCCGCCGGTA
CGATTGTTGCTTCCCCGGCCCCCACCGCCGCCGGGACCGGTGTTGTCGGT
ACCCCCGCGGGCTCGACGGCCATGCGGACGCCAGCCCCGTCCCTCGCAGA
CCGAGAGACGAATGTCACAACCCTTGCGCCGCTGACGCCGCCGCCGACTG
CCCCCACCTTCGCCCCCGTCGCCAATGTCTCGACGGCAGCCCCGACCACG
GCGTCAGCCGGGAACGGAAGGCGGGGGCTGCAAGAGGAGGAGGAGTGCGA
CAGCGACTGCCTGTTCCGCGAGTCCGACCGCTGCGTGAACGACCCCGAGT
GCGCCGACGGGGGTATGGGGTGCAACGCGCAGGGGGATCTGCTGTGCCGC
TTCTGCGGCAGCGAAGGGACGGAGTTCGGCGACGTGTACGGGCCGTGCCG
GGACCCGGACGAGCCGACACCGGCGCCGGTGCCCACGCCTGGGCCGACCA
TAGACCCCGACCGCGACGAGTGCGACGCCCCCTGCAAGGACAACCCGAAC
GCCGACTTCCCGTGCTTCGACGACCCGTCGTGCGGCGGCGACTCCGACCT
GCTCGGCTGCAACGCCTTCGGCAGCCCCTTTTGTCGGTTCTGCGACTTCC
CGGGAGCCCTCTTCGAGTGCCCGTTCCTGACGGGGACCCCGGCCCCCTCC
TCCGCCGGTACGATTGTTGCTTCTCCGGCCCCCTCCTCCGCCGGTACGAT
TGTTGCTTCCCCGGCCCCCACCGCCGCCGGGACCGGTGTTGTCGGTACCC
CCGCGGGCTCGACGGCCATGCGGACGCCAGCCCCGTCCCTCGCAGACCGA
GAGACGAATGTCACAACCCTTGCGCCGCTGACGCCGCCGCCGACTGCCCC
CACCTTCGCCCCCGTCGCCAATGTCTCGACGGCAGCCCCGAC
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