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Homology
BLAST of mRNA_L-elsbetiae_contig171.4742.1 vs. uniprot
Match: D7FSK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK8_ECTSI) HSP 1 Score: 176 bits (446), Expect = 4.460e-51 Identity = 87/102 (85.29%), Postives = 93/102 (91.18%), Query Frame = 1
Query: 25 MSSVLTSALRRAATQPKPPAFRAATVVNLKRGMAGSEGTPKYGAAKSFKEAWLSDKGAWPVMGVIGFAVSFVTYWSLSTLATNPDVRINRTVRETVIRPPRS 330
MSSV++SA+RRA QPKPP FRAATV NL RGMA SEGTPKYGAAKSFKEAWLSDKGAWPVMGVIGFA++FVTYWS STL TNPDVRINRT+RET IRPPRS
Sbjct: 1 MSSVVSSAMRRAVMQPKPPMFRAATV-NLTRGMASSEGTPKYGAAKSFKEAWLSDKGAWPVMGVIGFAITFVTYWSFSTLLTNPDVRINRTIRETTIRPPRS 101
BLAST of mRNA_L-elsbetiae_contig171.4742.1 vs. uniprot
Match: A0A6H5KK83_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK83_9PHAE) HSP 1 Score: 167 bits (422), Expect = 3.740e-47 Identity = 83/102 (81.37%), Postives = 90/102 (88.24%), Query Frame = 1
Query: 25 MSSVLTSALRRAATQPKPPAFRAATVVNLKRGMAGSEGTPKYGAAKSFKEAWLSDKGAWPVMGVIGFAVSFVTYWSLSTLATNPDVRINRTVRETVIRPPRS 330
MSSV++SA+RRA QPKPP FR ATV NL RGMA EG PKYGAAKSFKEAWLSD GAWPV+GVIGFAV+FVTYWS STLAT+PDVRINRT+RET IRPPRS
Sbjct: 27 MSSVVSSAMRRAVMQPKPPMFRTATV-NLTRGMASGEGAPKYGAAKSFKEAWLSDIGAWPVIGVIGFAVTFVTYWSFSTLATHPDVRINRTIRETTIRPPRS 127
BLAST of mRNA_L-elsbetiae_contig171.4742.1 vs. uniprot
Match: A0A836CCP5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCP5_9STRA) HSP 1 Score: 77.0 bits (188), Expect = 9.070e-14 Identity = 31/53 (58.49%), Postives = 42/53 (79.25%), Query Frame = 1
Query: 160 KSFKEAWLSDKGAWPVMGVIGFAVSFVTYWSLSTLATNPDVRINRTVRETVIR 318
+S ++ WL DKGAWPV+G+IGFA+ TYW L+TLATNPDVRI++ R+ +R
Sbjct: 38 RSVQQVWLGDKGAWPVIGIIGFALGLCTYWGLATLATNPDVRISKEGRKATLR 90
BLAST of mRNA_L-elsbetiae_contig171.4742.1 vs. uniprot
Match: A0A7S1UJQ1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJQ1_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 1.090e-9 Identity = 30/53 (56.60%), Postives = 37/53 (69.81%), Query Frame = 1
Query: 160 KSFKEAWLSDKGAWPVMGVIGFAVSFVTYWSLSTLATNPDVRINRTVRETVIR 318
K+ E WL DKGAWP++G+IG A F +WS STL TNPDVRI + R +IR
Sbjct: 252 KAESEGWLDDKGAWPIIGIIGGAGMFCAFWSFSTLVTNPDVRIRKFNRSKIIR 304
BLAST of mRNA_L-elsbetiae_contig171.4742.1 vs. uniprot
Match: A0A4D9DGT0_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DGT0_9STRA) HSP 1 Score: 53.1 bits (126), Expect = 1.650e-5 Identity = 27/58 (46.55%), Postives = 36/58 (62.07%), Query Frame = 1
Query: 145 KYGAAKSFKEAWLSDKGAWPVMGVIGFAVSFVTYWSLSTLATNPDVRINRTVRETVIR 318
+YG KSF WL DKGAWPV+G+IG A+ F + + + +PDVRI + R IR
Sbjct: 27 RYG--KSFGATWLGDKGAWPVIGIIGGALVFCGSFISNKIMFHPDVRITPSKRNADIR 82
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | NADH-ubiquinone reductase complex 1 MLRQ subunit |
| Ec32 ortholog | Ec-04_000360.1 |
| Exons | 3 |
| Model size | 1250 |
| Cds size | 309 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815712.4803913-UTR-L-elsbetiae_contig171:4178..5095 | 1622815712.4803913-UTR-L-elsbetiae_contig171:4178..5095 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig171 4179..5095 - |
| 1691683053.7029784-UTR-L-elsbetiae_contig171:4178..5095 | 1691683053.7029784-UTR-L-elsbetiae_contig171:4178..5095 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig171 4179..5095 - |
| 1622815712.532618-UTR-L-elsbetiae_contig171:7510..7534 | 1622815712.532618-UTR-L-elsbetiae_contig171:7510..7534 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig171 7511..7534 - |
| 1691683053.744572-UTR-L-elsbetiae_contig171:7510..7534 | 1691683053.744572-UTR-L-elsbetiae_contig171:7510..7534 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig171 7511..7534 - |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815712.4911156-CDS-L-elsbetiae_contig171:5095..5233 | 1622815712.4911156-CDS-L-elsbetiae_contig171:5095..5233 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig171 5096..5233 - |
| 1691683053.7170014-CDS-L-elsbetiae_contig171:5095..5233 | 1691683053.7170014-CDS-L-elsbetiae_contig171:5095..5233 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig171 5096..5233 - |
| 1622815712.5053697-CDS-L-elsbetiae_contig171:6470..6576 | 1622815712.5053697-CDS-L-elsbetiae_contig171:6470..6576 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig171 6471..6576 - |
| 1691683053.7262444-CDS-L-elsbetiae_contig171:6470..6576 | 1691683053.7262444-CDS-L-elsbetiae_contig171:6470..6576 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig171 6471..6576 - |
| 1622815712.5184388-CDS-L-elsbetiae_contig171:7445..7510 | 1622815712.5184388-CDS-L-elsbetiae_contig171:7445..7510 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig171 7446..7510 - |
| 1691683053.7345285-CDS-L-elsbetiae_contig171:7445..7510 | 1691683053.7345285-CDS-L-elsbetiae_contig171:7445..7510 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig171 7446..7510 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig171.4742.1 >prot_L-elsbetiae_contig171.4742.1 ID=prot_L-elsbetiae_contig171.4742.1|Name=mRNA_L-elsbetiae_contig171.4742.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=103bp
MSSVLTSALRRAATQPKPPAFRAATVVNLKRGMAGSEGTPKYGAAKSFKE
AWLSDKGAWPVMGVIGFAVSFVTYWSLSTLATNPDVRINRTVRETVIRPP
RS* back to topmRNA from alignment at L-elsbetiae_contig171:4179..7534- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig171.4742.1 ID=mRNA_L-elsbetiae_contig171.4742.1|Name=mRNA_L-elsbetiae_contig171.4742.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3356bp|location=Sequence derived from alignment at L-elsbetiae_contig171:4179..7534- (Laminarionema elsbetiae ELsaHSoW15)
TTTCAGGGTAAAAAAGAGAACGAAATGTCTTCCGTGCTGACCTCCGCGCT
GCGCCGGGCTGCCACCCAGCCCAAGCCTCCCGCATTCAGGTGAATAGTGA
AAAGGCACGAACCAAAGAGAGCTGCTTCGAAAGGGGTTGCCAGCAGAGAG
CAGCAGGAACTTTCGTGCCCCTCCGAGTATTTGTGCGATTTAAATGTTGT
GCTGAGCTTCGTCCTCTACAATACTCGGGGCAGGTTGCTGTTCCGTCTCT
TCAAGACACCAACATTTTTCCAGTTTCTGTTACATTTTGGGTGGGCGGCT
GAACTCACACACAAACATACGCACTCTTTCACCTAAAAGTTACGATCAAG
CAACCGGCCAAGCAAGTGCTGGCTCTCTGCATCTGCAATGTACATGTAGT
CACACCCCGGCATTACCTCTCATGGGTACACAAAGAAGGTAAACCGGCCT
TGGTCGTTCGGAGTTGACTGTGTGCCCATCCCTGGATGCACAGAGTAGCT
GGCCTGTAGACTGCTGTCGTGGACTGCTGTGAAGACTGCTCTTGTACAAT
AGGCGGGCTCGCGTAACTACTCGTTACCGGGTTATATTGACTGAGCAACA
CGTCTGAAGACACAGACTACCTGCTTCCATTGTTTGTGCTTCAGATAAGT
AAGCAAGCAAACAAAGTGGCAGCATTGCGAAGCGATTACTGCCGAGTTCA
TTAGATGGCTGAAGCTGTAGCTAATGCACAGGTCTCAATGCACGCTGCTG
TCCCAAATGTGTTCTTGAGGGTTGTAAGAGGTTACGAATGAGCCAAAATC
GATGCCAAGCTTTCAGTTTACAGATAATTCAGGATGGGCGTGTGTCACAA
GACATTCTCCAAATTGCATAATGTATCGGTGGCTCATGCACAAATAGCTT
TGTACCCCCGTAGATAGATATGACAGCAGGCACTCCGAAAATCGTTGGAC
ACGTGCAGGGCCGCTACGGTGGTGAACCTGAAGCGCGGGATGGCCGGATC
CGAAGGAACGCCCAAGTACGGAGCCGCGAAATCGTTTAAGGAGGCCTGGT
TGTCAGACAAGGGGGTGAGTCAAAAACCAATGTATCACCGGAGAGTTGCC
GTTGTCCGTGTACTAACCACATCCAAGGTGGACTGGAGTCCGGTGGGCTG
TGCTCGCTGAAGCTATCGACAGCAATCTCTCGACGAAAACGATGGATCCG
TGATTAGAGTCCGCCTGGCCTCTCTTGTCGACGGTAGTCTCCCGGTCGCC
TAGCGTTCAGGCAGGAAAGAGGATGGTACCTTTACCTCGGGCAGGTTGCA
CGTGTGCGTCGGTGCGCCCGTTCAGCGGTATAACAGTACAGCGCAATCCT
CTCCCCCGAGGCTGGTTTGTTCTGTATAAATACCTGACACCAATCTCGTT
TGTACACACGAATCGATGCATTGCGACACCAGCACCACGAATGTTTGGTT
CGCGTACACGATGCGTTGTGACAGCAGCACCACGAACGCTTTGGTTCGCG
TACGTCTGTACATTCAGAGAGGAGGTCGATCTTCCAGCCGACACCCGTTT
TCGCACTCTTGCACGAAACGACATAGGAGTACATAGTCTGTGTATTTGCA
CTCGAGTTCAGCAGTATGCCTACCGAACGAGCGGTCGCGCGCGCGGCGAG
AGTATGCTGCTGTAGAACGCACCTTGCCCCCCGTCGCACGTGGCTATCCG
CAGACTCTAGTCCATAGCCCTCACCCGCAAACCTTTGTGTGTGCTGGCGT
CTCTCAAACCGTGGAAGCTTTGTTTCCAAACGTGTGAAGGCTGAAATGGA
GTCGTCCACAGACGCGGAGGATGTTGTATCCTACCCTTTTGTAAAGGTGA
CCTCCACAACAAATATTAATTATCCCGTTGCGAACTTTACTCGACATGCC
CAAATGACTGTCATGACTGTCATTACCGTCGAGTGTCCCAGATTCGCACA
CCGGTAGGATATGCCGTTCTCCCCTGCTGGACATACCCACAACGGCAAGG
GTACACTACTTCTTGTTGGCTAAATATAGTTTCTGAAGTATTTTCTCGAG
CACTTTTCCGATGAAGCTTCTCGGTAGCATTTGGTTCCCTCCCCTCTCCC
CCCCCCCACTGTTGCGCAGAAGACCGATTGCGTCCCTGAATAAAATTATA
TACTCGGAGGGGGGTTCTGGGTATCACGTGCCCCGTGGCCGTATGGGTGT
GGTTTTGACTCTGTGCCGGATTGTGTCAGCCGGAGTTTGTGTTTGCTCAC
CCCCCTCCCCTGGCGATTGCGTACTACGGAACGTCCAACCATACCATGCA
GGCGTGGCCCGTGATGGGCGTGATCGGCTTCGCCGTGAGTTTCGTCACGT
ACTGGAGCCTTTCCACCCTCGCGACCAACCCGGACGTGCGCATCAACCGG
ACAGTGAGGGAGACGGTCATCCGCCCGCCACGCTCGTGACCGCGGTGTCA
CGAATGAGAGAAGGAGTCTGCGCAGGATCTCCCCACGTGTAGATCGTCTG
GTCCTAGAACGCGTGTGCGGGTGTCATGCTTGCTGCCGCGACACGGGATC
TGAGTGCAGTGTGCGGGGCGGGGCAGGCAGCCCACCGACGATGGGATGGC
CAGAGAGGGGATGCAGGCACCCAAAAAGAATTTGCACGGCGTGAGCAGCG
GGCTCAACAACTTGGCGATCGAACCAGCTTGCTTTGGGTTGGCGACGGGG
TGAAGTTTTTCGTTTGGTGCCTGGCAATTTGGGCTGGGCGGGGTGATACC
GAAAATTGAGTATGCGATGCAATAGTGGTGCGTGTCATGCTTTCTGGATC
TTTGACAGCATTGGGACGGCACTCGTGCCGTGTCGCGTGTAGCTGGTGCC
GCAGGAGTGGGGCGTATCTTTTGTTTTGCGGAGGGTGTAGTGCATGCCCT
CGTGGTTGGTTAAAAATACACACTGCTTCAGCAGCAGCGGGACCCGTGTC
GTGTTTCATTCGGTGTTTTTTTCTACTTTGTTGTTCTTTTTTTAGGGTGC
CTTGCGCGGCGTTGCACCGAATAAAGCGAGGAGATGGAAGAAGTTACGTG
TGTACGATATGTGTGTCAATACACACATAACGAACGTTTTTTTTTGTTTT
AGTGGGTTCCGCAAGCAACTGCCTGTGTGGCTTTCATGCTTCCTGCGGGC
TTGCGCTGCTCCCACGTGAATCAATGCATGCGCCGGCACTTTGGAGAAAA
CAAACTGCACCTGATCTCGGGTTTCTGTCGCCTTGCAGCAATTTTCTATG
CGCTTTCCGCCAACACACCAGCATTTTTGAGTTCCAGCCCTTTGTGCTTT
CGAACTTGGAACACTGCTACCTACCAAGGGCGCACAGAAAAATATTTCCG
ACCCAC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig171:4179..7534- >mRNA_L-elsbetiae_contig171.4742.1 ID=mRNA_L-elsbetiae_contig171.4742.1|Name=mRNA_L-elsbetiae_contig171.4742.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=618bp|location=Sequence derived from alignment at L-elsbetiae_contig171:4179..7534- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCTTCCGTGCTGACCTCCGCGCTGCGCCGGGCTGCCACCCAGCCCAA
GCCTCCCGCATTCAGATGTCTTCCGTGCTGACCTCCGCGCTGCGCCGGGC
TGCCACCCAGCCCAAGCCTCCCGCATTCAGGGCCGCTACGGTGGTGAACC
TGAAGCGCGGGATGGCCGGATCCGAAGGAACGCCCAAGTACGGAGCCGCG
AAATCGTTTAAGGAGGCCTGGTTGTCAGACAAGGGGGGCCGCTACGGTGG
TGAACCTGAAGCGCGGGATGGCCGGATCCGAAGGAACGCCCAAGTACGGA
GCCGCGAAATCGTTTAAGGAGGCCTGGTTGTCAGACAAGGGGGCGTGGCC
CGTGATGGGCGTGATCGGCTTCGCCGTGAGTTTCGTCACGTACTGGAGCC
TTTCCACCCTCGCGACCAACCCGGACGTGCGCATCAACCGGACAGTGAGG
GAGACGGTCATCCGCCCGCCACGCTCGTGAGCGTGGCCCGTGATGGGCGT
GATCGGCTTCGCCGTGAGTTTCGTCACGTACTGGAGCCTTTCCACCCTCG
CGACCAACCCGGACGTGCGCATCAACCGGACAGTGAGGGAGACGGTCATC
CGCCCGCCACGCTCGTGA back to top
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