prot_L-elsbetiae_contig1709.4735.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1709.4735.1
Unique Nameprot_L-elsbetiae_contig1709.4735.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length275
Homology
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BLAST of mRNA_L-elsbetiae_contig1709.4735.1 vs. uniprot
Match: D8LMZ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMZ5_ECTSI)

HSP 1 Score: 141 bits (355), Expect = 4.600e-36
Identity = 87/150 (58.00%), Postives = 99/150 (66.00%), Query Frame = 0 
Query:    1 MVATGITADTPVGTPLVGWLVVLGLVSLLTSLVTLLALDGATWLDAKGVEVCVKSFDLVCQXXXXXXSTSDDAWDKCFSPGNGDCGGIESAPPVLLASSFALLVLSIVSALLLAAGIKIKYLGGGVAEGGETEKTRSSHPAMMPSKNPFP 150
            M  TGITADTPVGTPLV  LV LG+ SL+TSLVT LALDGA WL  K VE+C      VCQ      S+S+  WD CF P NG CGGIE A   LLASS  LL L++VSA+LLA GIK+K+LGGGV  GGE  +    +PA  P K   P
Sbjct:  112 MAGTGITADTPVGTPLVTRLVFLGVASLITSLVTALALDGAKWLSIKDVEMCASDVRSVCQECTC--SSSNLLWDMCFPPLNGSCGGIEFAAAPLLASSVVLLALALVSAVLLATGIKVKFLGGGVEVGGEEARP---NPAKTPGKRRAP 256
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1709.4735.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LMZ5_ECTSI4.600e-3658.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 184..204
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 118..274
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 16..38
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 39..93
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..15
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 94..117
NoneNo IPR availableTMHMMTMhelixcoord: 95..117
NoneNo IPR availableTMHMMTMhelixcoord: 15..37

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1709contigL-elsbetiae_contig1709:15359..17115 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1709.4735.1mRNA_L-elsbetiae_contig1709.4735.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1709 14805..20152 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1709.4735.1 ID=prot_L-elsbetiae_contig1709.4735.1|Name=mRNA_L-elsbetiae_contig1709.4735.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=275bp
MVATGITADTPVGTPLVGWLVVLGLVSLLTSLVTLLALDGATWLDAKGVE
VCVKSFDLVCQSFDCACSTSDDAWDKCFSPGNGDCGGIESAPPVLLASSF
ALLVLSIVSALLLAAGIKIKYLGGGVAEGGETEKTRSSHPAMMPSKNPFP
ETPEPGNERHRHQHRRSRDEGKYHNRGQQPPRGLEEAKKTAVGAEYEEEQ
KKENDEDGVAVVTGAAVPKEAEEAPAGAEPWAVGYVDRLAGGGNKKRRDE
LNNPGRGGGGGGGGRGSVGAAVSQ*
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