mRNA_L-elsbetiae_contig17035.4716.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17035.4716.1
Unique NamemRNA_L-elsbetiae_contig17035.4716.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig17035.4716.1 vs. uniprot
Match: D8LRY6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY6_ECTSI)

HSP 1 Score: 58.5 bits (140), Expect = 6.800e-7
Identity = 28/46 (60.87%), Postives = 33/46 (71.74%), Query Frame = 1 
Query:   85 MILFVMLWILHDPREDDSVAGPDDSSKGVAGPDGDEYWEVPAGADG 222
            MILFVMLWILHDP E  S  G D+ S+G+A  +  EYWE+P  ADG
Sbjct:  267 MILFVMLWILHDPAEGGSSLGSDEGSQGLAAAEDPEYWEIPPEADG 312
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17035.4716.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LRY6_ECTSI6.800e-760.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17035contigL-elsbetiae_contig17035:1304..1849 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.1
Seed ortholog evalue5.3e-07
Seed eggNOG ortholog2880.D8LRY6
Hectar predicted targeting categoryother localisation
EggNOG OGs28MVM@1,2QUDV@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size546
Cds size231
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17035.4716.1prot_L-elsbetiae_contig17035.4716.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17035 1388..1618 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.8612592-UTR-L-elsbetiae_contig17035:1303..13871622815709.8612592-UTR-L-elsbetiae_contig17035:1303..1387Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17035 1304..1387 +
1691683051.9936273-UTR-L-elsbetiae_contig17035:1303..13871691683051.9936273-UTR-L-elsbetiae_contig17035:1303..1387Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17035 1304..1387 +
1622815709.8808718-UTR-L-elsbetiae_contig17035:1618..18491622815709.8808718-UTR-L-elsbetiae_contig17035:1618..1849Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17035 1619..1849 +
1691683052.0189621-UTR-L-elsbetiae_contig17035:1618..18491691683052.0189621-UTR-L-elsbetiae_contig17035:1618..1849Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig17035 1619..1849 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.8713074-CDS-L-elsbetiae_contig17035:1387..16181622815709.8713074-CDS-L-elsbetiae_contig17035:1387..1618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17035 1388..1618 +
1691683052.0054476-CDS-L-elsbetiae_contig17035:1387..16181691683052.0054476-CDS-L-elsbetiae_contig17035:1387..1618Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17035 1388..1618 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17035.4716.1

>prot_L-elsbetiae_contig17035.4716.1 ID=prot_L-elsbetiae_contig17035.4716.1|Name=mRNA_L-elsbetiae_contig17035.4716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
MILFVMLWILHDPREDDSVAGPDDSSKGVAGPDGDEYWEVPAGADGYGGG
GGGSKVSGPGLELAVDGQRSDKHGAI*
back to top

mRNA from alignment at L-elsbetiae_contig17035:1304..1849+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17035.4716.1 ID=mRNA_L-elsbetiae_contig17035.4716.1|Name=mRNA_L-elsbetiae_contig17035.4716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=546bp|location=Sequence derived from alignment at L-elsbetiae_contig17035:1304..1849+ (Laminarionema elsbetiae ELsaHSoW15)
CACAGCAGGATATCACTCTTTCGACATCGTGTTCAACAGCCGCGTTTGGA
ACTGGTATATCCTCATAAGTCAAGCACATCTCGAATGATTCTGTTCGTGA
TGCTGTGGATCTTGCATGACCCCAGAGAAGACGACTCGGTGGCAGGGCCC
GACGACAGCAGCAAAGGGGTGGCAGGGCCAGACGGGGACGAATACTGGGA
AGTTCCGGCAGGAGCTGATGGATACGGCGGTGGCGGTGGCGGTAGCAAAG
TTAGCGGCCCAGGCTTAGAGCTGGCGGTGGATGGGCAGAGGTCAGACAAG
CACGGCGCTATTTGATTTGGTGCTGGAAACGGTCAAGTCTCGCCTACTCC
TCTGCTACCTTTCGCGGTTGGTGGTTTCTCATTGGTGATGTTCGGCTTGA
GATTTAGCATTTGTGTGTGTTGTTCCTTCACCCGCGTGTGTTTTATTTCC
GTGGAATCCAAGTGGGATGTGTCAGTCCATCGTGCAGCGCAGACTTGTTG
TTTTATCAACGGACGTGGACTTTTGTGTCGTTTGTGTCTTGGGGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig17035:1304..1849+

>mRNA_L-elsbetiae_contig17035.4716.1 ID=mRNA_L-elsbetiae_contig17035.4716.1|Name=mRNA_L-elsbetiae_contig17035.4716.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig17035:1304..1849+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATTCTGTTCGTGATGCTGTGGATCTTGCATGACCCCAGAGAAGACGA
CTCGGTGGCAGGGCCCGACGACAGCAGCAAAGGGGTGGCAGGGCCAGACG
GGGACGAATACTGGGAAGTTCCGGCAGGAGCTGATGGATACGGCGGTGGC
GGTGGCGGTAGCAAAGTTAGCGGCCCAGGCTTAGAGCTGGCGGTGGATGG
GCAGAGGTCAGACAAGCACGGCGCTATTTGAATGATTCTGTTCGTGATGC
TGTGGATCTTGCATGACCCCAGAGAAGACGACTCGGTGGCAGGGCCCGAC
GACAGCAGCAAAGGGGTGGCAGGGCCAGACGGGGACGAATACTGGGAAGT
TCCGGCAGGAGCTGATGGATACGGCGGTGGCGGTGGCGGTAGCAAAGTTA
GCGGCCCAGGCTTAGAGCTGGCGGTGGATGGGCAGAGGTCAGACAAGCAC
GGCGCTATTTGA
back to top