mRNA_L-elsbetiae_contig17033.4714.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17033.4714.1
Unique NamemRNA_L-elsbetiae_contig17033.4714.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17033.4714.1 vs. uniprot
Match: D7FTZ3_ECTSI (EDR2_C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTZ3_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 4.130e-19
Identity = 40/47 (85.11%), Postives = 44/47 (93.62%), Query Frame = 1 
Query:   13 QVGLPSMFARFSGKPILLYGKESSMVRGPGFAELDLNAHAFSYVGRK 153
            +VGLPS+  RFSGKPILLYGKESSMV+GPG+ ELDLNAHAFSYVGRK
Sbjct: 1113 EVGLPSIARRFSGKPILLYGKESSMVKGPGYVELDLNAHAFSYVGRK 1159
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BLAST of mRNA_L-elsbetiae_contig17033.4714.1 vs. uniprot
Match: A0A835Z8Q7_9STRA (EDR2_C domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8Q7_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.870e-8
Identity = 27/47 (57.45%), Postives = 35/47 (74.47%), Query Frame = 1 
Query:   16 VGLPSMFARFSGKPILLYGKESSMVR--GPGFAELDLNAHAFSYVGR 150
            VGLPS   +F+ +PIL++G+ESS  R    G AELD+NAH FSY+GR
Sbjct:  405 VGLPSFCRKFNARPILIHGRESSFTRDVAKGRAELDVNAHNFSYIGR 451
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17033.4714.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FTZ3_ECTSI4.130e-1985.11EDR2_C domain-containing protein n=2 Tax=Ectocarpu... [more]
A0A835Z8Q7_9STRA2.870e-857.45EDR2_C domain-containing protein n=1 Tax=Tribonema... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17033contigL-elsbetiae_contig17033:318..494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score88.6
Seed ortholog evalue1.1e-15
Seed eggNOG ortholog2880.D7FTZ3
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.Protein of unknown function (DUF1336)
EggNOG OGs28UHR@1,2R18H@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size177
Cds size177
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.7270455-CDS-L-elsbetiae_contig17033:317..4941622815709.7270455-CDS-L-elsbetiae_contig17033:317..494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17033 318..494 -
1691683051.9336624-CDS-L-elsbetiae_contig17033:317..4941691683051.9336624-CDS-L-elsbetiae_contig17033:317..494Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17033 318..494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17033.4714.1prot_L-elsbetiae_contig17033.4714.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17033 318..494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17033.4714.1

>prot_L-elsbetiae_contig17033.4714.1 ID=prot_L-elsbetiae_contig17033.4714.1|Name=mRNA_L-elsbetiae_contig17033.4714.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=59bp
MLYIQVGLPSMFARFSGKPILLYGKESSMVRGPGFAELDLNAHAFSYVGR
KVCVCVCV*
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mRNA from alignment at L-elsbetiae_contig17033:318..494-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17033.4714.1 ID=mRNA_L-elsbetiae_contig17033.4714.1|Name=mRNA_L-elsbetiae_contig17033.4714.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=177bp|location=Sequence derived from alignment at L-elsbetiae_contig17033:318..494- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTTATATTCAGGTGGGCCTCCCGAGCATGTTCGCGCGTTTCAGCGG
GAAGCCTATCCTCCTCTACGGCAAGGAGTCCAGCATGGTCAGAGGACCTG
GCTTCGCAGAGCTCGATCTTAACGCCCACGCCTTCTCCTACGTCGGCCGC
AAGGTGTGTGTGTGTGTGTGTGTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17033:318..494-

>mRNA_L-elsbetiae_contig17033.4714.1 ID=mRNA_L-elsbetiae_contig17033.4714.1|Name=mRNA_L-elsbetiae_contig17033.4714.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig17033:318..494- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTTTATATTCAGGTGGGCCTCCCGAGCATGTTCGCGCGTTTCAGCGG
GAAGCCTATCCTCCTCTACGGCAAGGAGTCCAGCATGGTCAGAGGACCTG
GCTTCGCAGAGCTCGATCTTAACGCCCACGCCTTCTCCTACGTCGGCCGC
AAGGTGTGTGTGTGTGTGTGTGTGTGAATGCTTTATATTCAGGTGGGCCT
CCCGAGCATGTTCGCGCGTTTCAGCGGGAAGCCTATCCTCCTCTACGGCA
AGGAGTCCAGCATGGTCAGAGGACCTGGCTTCGCAGAGCTCGATCTTAAC
GCCCACGCCTTCTCCTACGTCGGCCGCAAGGTGTGTGTGTGTGTGTGTGT
GTGA
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