|
Homology
BLAST of mRNA_L-elsbetiae_contig1703.4710.1 vs. uniprot
Match: A0A6H5LCQ2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCQ2_9PHAE) HSP 1 Score: 128 bits (322), Expect = 2.350e-28 Identity = 96/289 (33.22%), Postives = 149/289 (51.56%), Query Frame = 3
Query: 546 LHVASVIVAALSLFYFAMVLGDELQW---SFCMLGILQFPVNISCAFFATRMWIYAIDPRLMRRSPEVLALSSQMEKPAGRRAAFWAVSIAPSLGTVFTLAGLNQYAMKAVAVGIIFQAVAIGATFWVGGRSLVGAINESLRQHQQQ---------RRETVTVLTAATAVT--GTTRGGADENDQDGGDVSG-------------------DNFVPGAGDQPLLAAKKKIKRMTIFALQNVVVVMSMLLVTVFTDYGVAAPLLLYMTPITFVPLVWGIVNVQLHAGRSK 1313
+HV +V AA+SLFYF +VL E +W S ++ + Q V++ C F RMWIY D RLM+ S +L +S+ +EK G+R ++ +S P + TV L G + A K VAV I V +FW+ GR+L+ AI+ SL+ +++ RRE+V + T G RG + + GG +S D G G+ L AAK+K++ + +F + ++LL+++ + YG PL+L+ + PLVW N+QLHAGRS+
Sbjct: 1 MHVTAVANAAISLFYFLLVLLVEARWHEISVLVMILNQITVSV-CGFSTVRMWIYTNDTRLMQGSITILRISAALEKKNGQRLSYLVLSTGPVVATVLALLGRTEAAAKLVAVTFIMLIVVADTSFWIFGRALLRAIDASLQNSRKRAMESVFGKDRRESVLAVLGGTEADEEGGRRGSSISAGEGGGRLSRKWSSGRLQRRGSWWGGEGRDESELGGGE--LQAAKRKVRWVMVFCALMSLEGYAILLLSILSKYGTTVPLILFGVQMAIFPLVWHAFNIQLHAGRSR 286
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 4 |
Model size | 1924 |
Cds size | 1242 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815709.3645852-UTR-L-elsbetiae_contig1703:1590..1844 | 1622815709.3645852-UTR-L-elsbetiae_contig1703:1590..1844 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1703 1591..1844 + |
1691683051.710073-UTR-L-elsbetiae_contig1703:1590..1844 | 1691683051.710073-UTR-L-elsbetiae_contig1703:1590..1844 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1703 1591..1844 + |
1622815709.4323769-UTR-L-elsbetiae_contig1703:5923..6351 | 1622815709.4323769-UTR-L-elsbetiae_contig1703:5923..6351 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1703 5924..6351 + |
1691683051.7623022-UTR-L-elsbetiae_contig1703:5923..6351 | 1691683051.7623022-UTR-L-elsbetiae_contig1703:5923..6351 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1703 5924..6351 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815709.3854282-CDS-L-elsbetiae_contig1703:1844..2072 | 1622815709.3854282-CDS-L-elsbetiae_contig1703:1844..2072 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1703 1845..2072 + |
1691683051.7215745-CDS-L-elsbetiae_contig1703:1844..2072 | 1691683051.7215745-CDS-L-elsbetiae_contig1703:1844..2072 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1703 1845..2072 + |
1622815709.3969717-CDS-L-elsbetiae_contig1703:4122..4343 | 1622815709.3969717-CDS-L-elsbetiae_contig1703:4122..4343 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1703 4123..4343 + |
1691683051.7321336-CDS-L-elsbetiae_contig1703:4122..4343 | 1691683051.7321336-CDS-L-elsbetiae_contig1703:4122..4343 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1703 4123..4343 + |
1622815709.4130197-CDS-L-elsbetiae_contig1703:4822..5370 | 1622815709.4130197-CDS-L-elsbetiae_contig1703:4822..5370 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1703 4823..5370 + |
1691683051.74493-CDS-L-elsbetiae_contig1703:4822..5370 | 1691683051.74493-CDS-L-elsbetiae_contig1703:4822..5370 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1703 4823..5370 + |
1622815709.4229672-CDS-L-elsbetiae_contig1703:5678..5923 | 1622815709.4229672-CDS-L-elsbetiae_contig1703:5678..5923 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1703 5679..5923 + |
1691683051.7540636-CDS-L-elsbetiae_contig1703:5678..5923 | 1691683051.7540636-CDS-L-elsbetiae_contig1703:5678..5923 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1703 5679..5923 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1703.4710.1 >prot_L-elsbetiae_contig1703.4710.1 ID=prot_L-elsbetiae_contig1703.4710.1|Name=mRNA_L-elsbetiae_contig1703.4710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=414bp
MCTQGCRTFLWGGRGTPVSDEDGRCFCVCQDDSWSDLNLLGCASCVPMKV HMIYGWAGLILSVAALCHAVYQLRRQLRFNAQELAPWTSCAEQCRRSLHV ASVIVAALSLFYFAMVLGDELQWSFCMLGILQFPVNISCAFFATRMWIYA IDPRLMRRSPEVLALSSQMEKPAGRRAAFWAVSIAPSLGTVFTLAGLNQY AMKAVAVGIIFQAVAIGATFWVGGRSLVGAINESLRQHQQQRRETVTVLT AATAVTGTTRGGADENDQDGGDVSGDNFVPGAGDQPLLAAKKKIKRMTIF ALQNVVVVMSMLLVTVFTDYGVAAPLLLYMTPITFVPLVWGIVNVQLHAG RSKIRSRSSQGLLASAISSRYRRSSLFLDASLSRRISSVYFAFAGKQPVV PTEQPAQQAHPTE* back to topmRNA from alignment at L-elsbetiae_contig1703:1591..6351+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1703.4710.1 ID=mRNA_L-elsbetiae_contig1703.4710.1|Name=mRNA_L-elsbetiae_contig1703.4710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4761bp|location=Sequence derived from alignment at L-elsbetiae_contig1703:1591..6351+ (Laminarionema elsbetiae ELsaHSoW15) CTGGCGCTACCTCTCGTTTTATGGGCGAAGGCCTTCCGTGGGTGATGTGC
CAGAGAGCCGGTATCTCATCATCTAGCAAACCAAGGCCTAGCCGTCTCTC
CGATCTCTGGATTTATCCCATCATCTCTGCATCTCTGCACAAGATCTCAA
AAGTATTTTTGTGTGAATACAGCGGGTGTGGGACATTGAGGCGCGCTCCG
AACCTTTGAAGCGCGCAAACGCTCCGCGTGACCCCACCAGAGATAAAGGG
CATCATGTGCACCCAAGGATGTAGAACATTCCTATGGGGAGGCCGGGGCA
CTCCTGTGTCAGATGAGGACGGACGATGTTTCTGCGTATGTCAGGACGAC
AGCTGGTCGGATCTGAACCTGCTGGGATGTGCGTCGTGTGTTCCTATGAA
GGTCCATATGATCTACGGCTGGGCTGGTCTGATCCTTTCTGTGGCTGCTC
TCTGCCACGCAGTTTATCAACTCCGTCGACAGGTGAGTTTATGCTCTGGT
TGCGTAGACTCTTACGCAAGTTTTCTCGGGTTCAAGTTGTGAAAGACTGG
AGACTACTGCTGTGATGACGTGTGCTTTTGTCTATCCGGATATCTACATA
CGGACCGGTAGCTGAATGGTCTATACCCATGTGAGTACGTTAGCGCGTCC
TACGAAGATATGATTCCTCGGCAAAGCACCATGAGTTTCACTTCTCGCTA
CATATGCCTGCCCCTCACCCAAAGAGCAATACAAATATTTTGAGTCGCTA
CTCTTGCACATACACTAGGCGGGTTCCGCGGTAAAGCTCAATATTTCGGG
GGGGGTTCCGTGAATTCTTACCATCTTCATCCCAACCCTCGATTTTTTTC
TGACATGCTCCTGTTATGAAGTAATGATGTTGTGCAAAATTTGAGGTTCA
AAATCGTTCGTCTTGCCCGGGTTTCATTGAATACTAGTAAATTCCTATGG
CTAAGGATCGAAACGCATACGGCGGGGATGGTGCTGAAAAATCCCCGGGT
TTGAAAATATCTCTCGGACGAAGCTGAATTTTTCAGGTAATGGCAATATT
GGGGCGGGGATCACGAATCCGGTGTCGGATTATCATAGTTTTGCAGCTGG
GGCGCTACTTATGAACATTCAAGGTTTACGCAAGAAAGAGGGGACAATCC
TGGGATGATACTGGAATTAGACTGAAATATCCCCTCCCCGGGCATACGTT
CCACATATCGATTCCGGCTCCACAGACTTCATTCTAGGGTGATTTTGGGT
CGGGGGTCACGAATATATCATTAGAACACGCTATTTCGGCTATGCAATCG
AGTTGTAGGTGTACAAATGCTGGGCTTTCGTGGGCCATTTCAAGATTTCT
GAGAAATTTGAAATTCGGATCCGGGCACGAGTTTTTGTCTGATCAGCTTT
CTGAGTGGCTCTACCCCCCCTAATTCGACCAAGCCGGATCGAATGGCGAT
GAGATACCTTGAAAAAAAGTTCGGGAACGCGGCGAAAAAAAAAATAAGAC
CAGAAGGGCAGCTTATTTTTTTGGTACCTTTTTTTTAGACGACGTTTTTG
GGCGTTCAAAAGCGAACCACGAAGTCGATTTTTCATTTTTGTTTTTCGAG
CCCGGAGAGGACATTGAGCTTTAGCGCGGAACCAGCCACTAGCTATCTAT
GTAAATACACATCTATCTTGATATTTGAAATTGGCCAAAATGGGGTCTAT
GTAGACCCCCCGGGGATGTATTGGAACGAAACAGGTACTTCCTATATGCA
TTTGGTAGAAGGGGGTGCCAGCGTACGGCGGCTAAACCCATCGATTTCGT
GTCATGGTGCCTCCGCCCAACGTCCACGGTTGTGTGGAAAATAATTCCAG
ACAGTTTCCTAGTCACCCCAGAACAGGGCACGAGCGCTCAAACAGTCAAA
AGCCTCTTCACCGACGACGCTAATCAATGTGTTGGTGAGCCCCAGGGTGT
ATGTATATACATACGCATATCCTTTGCAAAAAAAGCAAAATAGAGACATC
ACCTCCTTTTGGATAATAGTGCACCTCCTTTGCCGTTCTTTTGCCGTTAC
AGGCTAAAGAAGGTGCACTATTAACGGCATCATCCCCTTTTGTTCAACGG
TCCTCTCCCGCGGCGAGATGAATTTTATACTTGAAGCAGCCGACCGTCAC
TCCGCAACTCCGAACAAAAGACCCTATCTATGCAATTGGCATCCGGCAAT
GGGCAAGCTAGCTGTGTGCGATGCGACTCATTTCCGGTCCCCGCGACCAC
GGCAGCAAGACCATTTGTTTGTTGTTGTTGTTTCTTCACATTAAAAACCA
TCCCGATGTCTCCACCACCCCGTACCTCCCTCTTATGTCCGTACTATTCA
AACACTTAATGCGGTCAATTCCTGTGGTCACAGGCTAACTCATACCTAAA
ACAGGTATTGTAGACAGCGCCAAAGAGCAACGAGGTATTGCATACCTTTC
CACCGATCCCTCTCTGTGTAACACTTCCGTTGCGTGCTTGGTTACTGAAT
TGCTGTTGCGCTGCCTCGTGTTCAATGAGCAGCTAAGGTTCAACGCCCAG
GAGTTAGCGCCTTGGACCTCTTGCGCCGAGCAATGCCGCCGAAGTTTGCA
CGTTGCATCAGTCATCGTTGCGGCCCTCAGCCTGTTCTACTTCGCCATGG
TACTGGGGGACGAGCTGCAGTGGTCCTTCTGCATGTTGGGCATTCTCCAG
TTCCCGGTCAATATCAGTTGCGCCTTCTTCGCTACCCGAATGTGGATATA
CGCGTGAGTTGGAGATCGGTATTCGGGGGGCGACAATTGTTCTGCAACCA
CGTAAAGCAATAGCTGTCGCGATTGCGGGGGGCAAGATGGTAGCTGTTGC
CAAGCTCAGGGCGCACACAAGCCGTTGTCACGCTTCAGCTTTCAACGCGT
CCAGCGCAAGACCTCTAGACTATATGTGGCACGGCTCTTCAGCCCTTGCC
GGCATTTCCCCAAAAATTCAACGCCATTCTTAGCTTCCGCTATCGGGTTG
TAGCGATCTGTATCTGGTGATAGTTCCCTTCAATAATAGCGTATTATTTC
CGGCCTTTTAACCACATAATTTTGCGCATGTTAAACTTCGAGTAGATTTT
AGAAAGGAAAACAAAATAAACAAGCCGCTGACGTAGCATCGAGCTACTCT
TAGAATAAAAGTACAGCGCGCGGGCGGCACCAACAATATGGCTGATGGCA
TACGTAAACGCCTCCTTGTATACAACAAACAGGATCGACCCCCGGTTGAT
GCGGAGAAGCCCGGAGGTGCTCGCATTATCCTCTCAGATGGAGAAGCCTG
CCGGGCGCCGAGCGGCATTCTGGGCGGTATCGATTGCTCCTAGCCTTGGA
ACGGTCTTCACCCTTGCCGGCCTCAACCAGTACGCCATGAAAGCGGTCGC
GGTGGGAATCATTTTTCAAGCCGTAGCCATAGGAGCCACATTTTGGGTTG
GTGGGAGGTCGTTGGTGGGGGCAATCAATGAATCTCTGCGGCAGCACCAG
CAGCAGCGGCGTGAAACGGTGACAGTGCTAACAGCGGCGACAGCGGTGAC
GGGCACGACACGGGGGGGCGCGGACGAAAATGATCAAGACGGGGGAGATG
TATCAGGGGATAACTTTGTCCCAGGCGCAGGCGATCAACCGCTTCTGGCA
GCGAAGAAGAAAATCAAGCGAATGACGATCTTCGCCCTTCAAAACGTAGT
GGTGGTGATGTCCATGCTTCTCGTCACTGTTTTTACAGACTACGGGGTTG
CCGCGCCGCTCCTTCTGTACATGACTCCAAGTGAGTCTGTTCATAACCTG
CTTCTGAAATGTGTACACGCAGTTGTTGCGCCTGACTCCGACAGTTCAGA
AAACCCAGCTTGGACGTCCTTTTTATTATGCAAGTGGTATAGGGAGGTGG
TGATGAAGCTGCGGCCCATGCATCCTCAACGTCGCACCATTGCCGAATGT
AGCGTCTAGACTTACTCCTCTGCCATGAGTAGTACAAGAAAACTATAGTC
CGAATCAGATATCTAGTCTATTGTTGTTCGTTCAGCGCGACGACCGCCCC
GAACCTTCGCCGTCTCGTGGTTTTGCGTGTCGATGCAGTCACCTTTGTTC
CGTTGGTTTGGGGCATCGTGAACGTGCAGCTGCACGCTGGGAGAAGCAAG
ATCCGCAGCAGATCATCGCAGGGGCTGCTTGCCTCTGCCATCAGCAGCCG
ATACCGGCGGTCGTCGTTGTTTCTCGACGCCAGTCTCTCTCGCAGGATCA
GCAGTGTGTACTTTGCGTTTGCTGGTAAACAGCCAGTTGTGCCCACAGAA
CAGCCTGCACAACAAGCACACCCAACAGAATGAAACCCGACGTTTGCTAG
TTAGTCTATGCCTTCACGCCAAAGACGGCGCTCGCACCAGGTCAGGAATC
AAACCATGGTCCCTTCGATTAAATACAGGGAAAAAAGTGGTGCCGACGAG
TTGCTGTTGTTGTCTTCAAAACAACGAGTTGCCGGAAGGAGGTGTTTGTC
TTTCAGAATGGGTTTATTTTGCCGATTGCGTGTACGTACGTACGTAGATG
GCGCCCTAGACTTATGGCCGGAGTTGATGCCAAAACAGTCCTGCATTAGG
TATACACTAGTCTATTAATATACTCCGTTTATCTTATCTACTACACAGCG
AGAATAAATGAATACTTTTCTATCGGTTTGCAACTTTTTTTGCGAACCAT
GTGTGTATGTGGTGAACGTCTTGGGGGGGGGGTTGAGTTTGCTTGGTTGG
TTGAGTATGTT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1703:1591..6351+ >mRNA_L-elsbetiae_contig1703.4710.1 ID=mRNA_L-elsbetiae_contig1703.4710.1|Name=mRNA_L-elsbetiae_contig1703.4710.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2484bp|location=Sequence derived from alignment at L-elsbetiae_contig1703:1591..6351+ (Laminarionema elsbetiae ELsaHSoW15) ATGTGCACCCAAGGATGTAGAACATTCCTATGGGGAGGCCGGGGCACTCC TGTGTCAGATGAGGACGGACGATGTTTCTGCGTATGTCAGGACGACAGCT GGTCGGATCTGAACCTGCTGGGATGTGCGTCGTGTGTTCCTATGAAGGTC CATATGATCTACGGCTGGGCTGGTCTGATCCTTTCTGTGGCTGCTCTCTG CCACGCAGTTTATCAACTCCGTCGACAGATGTGCACCCAAGGATGTAGAA CATTCCTATGGGGAGGCCGGGGCACTCCTGTGTCAGATGAGGACGGACGA TGTTTCTGCGTATGTCAGGACGACAGCTGGTCGGATCTGAACCTGCTGGG ATGTGCGTCGTGTGTTCCTATGAAGGTCCATATGATCTACGGCTGGGCTG GTCTGATCCTTTCTGTGGCTGCTCTCTGCCACGCAGTTTATCAACTCCGT CGACAGCTAAGGTTCAACGCCCAGGAGTTAGCGCCTTGGACCTCTTGCGC CGAGCAATGCCGCCGAAGTTTGCACGTTGCATCAGTCATCGTTGCGGCCC TCAGCCTGTTCTACTTCGCCATGGTACTGGGGGACGAGCTGCAGTGGTCC TTCTGCATGTTGGGCATTCTCCAGTTCCCGGTCAATATCAGTTGCGCCTT CTTCGCTACCCGAATGTGGATATACGCCTAAGGTTCAACGCCCAGGAGTT AGCGCCTTGGACCTCTTGCGCCGAGCAATGCCGCCGAAGTTTGCACGTTG CATCAGTCATCGTTGCGGCCCTCAGCCTGTTCTACTTCGCCATGGTACTG GGGGACGAGCTGCAGTGGTCCTTCTGCATGTTGGGCATTCTCCAGTTCCC GGTCAATATCAGTTGCGCCTTCTTCGCTACCCGAATGTGGATATACGCGA TCGACCCCCGGTTGATGCGGAGAAGCCCGGAGGTGCTCGCATTATCCTCT CAGATGGAGAAGCCTGCCGGGCGCCGAGCGGCATTCTGGGCGGTATCGAT TGCTCCTAGCCTTGGAACGGTCTTCACCCTTGCCGGCCTCAACCAGTACG CCATGAAAGCGGTCGCGGTGGGAATCATTTTTCAAGCCGTAGCCATAGGA GCCACATTTTGGGTTGGTGGGAGGTCGTTGGTGGGGGCAATCAATGAATC TCTGCGGCAGCACCAGCAGCAGCGGCGTGAAACGGTGACAGTGCTAACAG CGGCGACAGCGGTGACGGGCACGACACGGGGGGGCGCGGACGAAAATGAT CAAGACGGGGGAGATGTATCAGGGGATAACTTTGTCCCAGGCGCAGGCGA TCAACCGCTTCTGGCAGCGAAGAAGAAAATCAAGCGAATGACGATCTTCG CCCTTCAAAACGTAGTGGTGGTGATGTCCATGCTTCTCGTCACTGTTTTT ACAGACTACGGGGTTGCCGCGCCGCTCCTTCTGTACATGACTCCAAGATC GACCCCCGGTTGATGCGGAGAAGCCCGGAGGTGCTCGCATTATCCTCTCA GATGGAGAAGCCTGCCGGGCGCCGAGCGGCATTCTGGGCGGTATCGATTG CTCCTAGCCTTGGAACGGTCTTCACCCTTGCCGGCCTCAACCAGTACGCC ATGAAAGCGGTCGCGGTGGGAATCATTTTTCAAGCCGTAGCCATAGGAGC CACATTTTGGGTTGGTGGGAGGTCGTTGGTGGGGGCAATCAATGAATCTC TGCGGCAGCACCAGCAGCAGCGGCGTGAAACGGTGACAGTGCTAACAGCG GCGACAGCGGTGACGGGCACGACACGGGGGGGCGCGGACGAAAATGATCA AGACGGGGGAGATGTATCAGGGGATAACTTTGTCCCAGGCGCAGGCGATC AACCGCTTCTGGCAGCGAAGAAGAAAATCAAGCGAATGACGATCTTCGCC CTTCAAAACGTAGTGGTGGTGATGTCCATGCTTCTCGTCACTGTTTTTAC AGACTACGGGGTTGCCGCGCCGCTCCTTCTGTACATGACTCCAATCACCT TTGTTCCGTTGGTTTGGGGCATCGTGAACGTGCAGCTGCACGCTGGGAGA AGCAAGATCCGCAGCAGATCATCGCAGGGGCTGCTTGCCTCTGCCATCAG CAGCCGATACCGGCGGTCGTCGTTGTTTCTCGACGCCAGTCTCTCTCGCA GGATCAGCAGTGTGTACTTTGCGTTTGCTGGTAAACAGCCAGTTGTGCCC ACAGAACAGCCTGCACAACAAGCACACCCAACAGAATGATCACCTTTGTT CCGTTGGTTTGGGGCATCGTGAACGTGCAGCTGCACGCTGGGAGAAGCAA GATCCGCAGCAGATCATCGCAGGGGCTGCTTGCCTCTGCCATCAGCAGCC GATACCGGCGGTCGTCGTTGTTTCTCGACGCCAGTCTCTCTCGCAGGATC AGCAGTGTGTACTTTGCGTTTGCTGGTAAACAGCCAGTTGTGCCCACAGA ACAGCCTGCACAACAAGCACACCCAACAGAATGA back to top
|