mRNA_L-elsbetiae_contig1703.4713.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1703.4713.1
Unique NamemRNA_L-elsbetiae_contig1703.4713.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1703.4713.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1703contigL-elsbetiae_contig1703:18171..18994 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size341
Cds size339
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.3225753-CDS-L-elsbetiae_contig1703:18170..184831622815709.3225753-CDS-L-elsbetiae_contig1703:18170..18483Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1703 18171..18483 +
1691683051.6841354-CDS-L-elsbetiae_contig1703:18170..184831691683051.6841354-CDS-L-elsbetiae_contig1703:18170..18483Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1703 18171..18483 +
1622815709.3351047-CDS-L-elsbetiae_contig1703:18967..189931622815709.3351047-CDS-L-elsbetiae_contig1703:18967..18993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1703 18968..18993 +
1691683051.696765-CDS-L-elsbetiae_contig1703:18967..189931691683051.696765-CDS-L-elsbetiae_contig1703:18967..18993Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1703 18968..18993 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1703.4713.1prot_L-elsbetiae_contig1703.4713.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1703 18171..18993 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1703.4713.1

>prot_L-elsbetiae_contig1703.4713.1 ID=prot_L-elsbetiae_contig1703.4713.1|Name=mRNA_L-elsbetiae_contig1703.4713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
RSPAAAERVVVRAPDNHIIKLHQGRSGSVAEQIIYNKSLERRSHTSSLMH
DEIKLLLLKHQLLAHGPGRQQGGRKQRGPVAAYLPETNILIDLCRKYYSL
VTRRGPGQRCSTE
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mRNA from alignment at L-elsbetiae_contig1703:18171..18994+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1703.4713.1 ID=mRNA_L-elsbetiae_contig1703.4713.1|Name=mRNA_L-elsbetiae_contig1703.4713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=824bp|location=Sequence derived from alignment at L-elsbetiae_contig1703:18171..18994+ (Laminarionema elsbetiae ELsaHSoW15)
CGGAGTCCAGCGGCGGCGGAGCGTGTTGTCGTGCGTGCACCAGACAATCA
CATCATCAAGCTGCACCAGGGGCGTTCGGGTTCGGTTGCAGAACAAATAA
TTTACAACAAATCGCTTGAGAGAAGATCCCACACGTCGTCTCTCATGCAT
GATGAGATCAAGCTCCTCTTACTCAAGCATCAGCTTCTAGCACACGGCCC
AGGCCGACAACAGGGTGGTCGGAAACAGCGGGGTCCCGTTGCAGCCTACC
TTCCGGAAACGAACATTCTCATCGATCTTTGTCGAAAGTACTACTCTCTT
GTCACGAGGAGAGGTATGTATGTTTCGTCTCCATTTTTGAGTTTGGGGGA
GAATCTCCGTCTTTTCGATTTCCATGTGTGTGGTGTGAGGGAGAGAAAGC
GAAAGCGAGAGGGTACGCACATACATACTTGTGCGTAGGTCGTACCACAA
TATTAGTGGGGCGATATGGCGTGATTTTTCCAAGCGCCTGGCGAAAAATT
GCAAGCGCAGAGAAGTGTTGTGGCTCACATTTGAATGCTCAAATTTGCCA
TCGAACGGCTGTGTTGCTCGGATTTGACCCACCGCCGCTGCACGAGGCAT
GTACAATGTACGTGGACCACCAGTACTACAACTATACGCTGCGTTGTTCG
AAGCGGCAGTGCATTCAAGCTGAGTCTACATACGTACGACAACGCGTTTC
CTCATAATTCAAGTGCCGCCGTCCTCCGTTATCGTCGTCGATCCCACCGC
CTGTTGTGCCGATTCGTGTGGGCTGGCTGCCAATCGGCTGAGAACAGGCC
CGGGGCAGCGGTGCAGCACCGAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1703:18171..18994+

>mRNA_L-elsbetiae_contig1703.4713.1 ID=mRNA_L-elsbetiae_contig1703.4713.1|Name=mRNA_L-elsbetiae_contig1703.4713.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig1703:18171..18994+ (Laminarionema elsbetiae ELsaHSoW15)
CGGAGTCCAGCGGCGGCGGAGCGTGTTGTCGTGCGTGCACCAGACAATCA
CATCATCAAGCTGCACCAGGGGCGTTCGGGTTCGGTTGCAGAACAAATAA
TTTACAACAAATCGCTTGAGAGAAGATCCCACACGTCGTCTCTCATGCAT
GATGAGATCAAGCTCCTCTTACTCAAGCATCAGCTTCTAGCACACGGCCC
AGGCCGACAACAGGGTGGTCGGAAACAGCGGGGTCCCGTTGCAGCCTACC
TTCCGGAAACGAACATTCTCATCGATCTTTGTCGAAAGTACTACTCTCTT
GTCACGAGGAGAGCGGAGTCCAGCGGCGGCGGAGCGTGTTGTCGTGCGTG
CACCAGACAATCACATCATCAAGCTGCACCAGGGGCGTTCGGGTTCGGTT
GCAGAACAAATAATTTACAACAAATCGCTTGAGAGAAGATCCCACACGTC
GTCTCTCATGCATGATGAGATCAAGCTCCTCTTACTCAAGCATCAGCTTC
TAGCACACGGCCCAGGCCGACAACAGGGTGGTCGGAAACAGCGGGGTCCC
GTTGCAGCCTACCTTCCGGAAACGAACATTCTCATCGATCTTTGTCGAAA
GTACTACTCTCTTGTCACGAGGAGAGGCCCGGGGCAGCGGTGCAGCACCG
AAGCCCGGGGCAGCGGTGCAGCACCGAA
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