mRNA_L-elsbetiae_contig17029.4709.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17029.4709.1
Unique NamemRNA_L-elsbetiae_contig17029.4709.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig17029.4709.1 vs. uniprot
Match: A0A6H5L6P2_9PHAE (AB hydrolase-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6P2_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.400e-33
Identity = 63/71 (88.73%), Postives = 67/71 (94.37%), Query Frame = 1
Query:    1 VSFYTSVGCDVFLFNYRGYGRSGGRASPDTINKDVREVVEYLREQVGVSRLAVHGESIGGVAAASVARHSE 213
            VSFYTSVGCDVFLFNYRGYGRSGG+ASP  INKDVRE+V YLRE VGV+RLAVHGESIGGVAAASVARHS+
Sbjct:  512 VSFYTSVGCDVFLFNYRGYGRSGGKASPANINKDVREIVTYLRENVGVTRLAVHGESIGGVAAASVARHSQ 582          
BLAST of mRNA_L-elsbetiae_contig17029.4709.1 vs. uniprot
Match: A0A1V9YDH8_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YDH8_9STRA)

HSP 1 Score: 85.9 bits (211), Expect = 6.060e-18
Identity = 39/71 (54.93%), Postives = 51/71 (71.83%), Query Frame = 1
Query:    1 VSFYTSVGCDVFLFNYRGYGRSGGRASPDTINKDVREVVEYLREQVGVSRLAVHGESIGGVAAASVARHSE 213
            + FYT +G +VFLFNYRGYGR+ G  SP   N D   +  YLR + G++RLA+HGESIGG+ A  VA+H+E
Sbjct:  377 IQFYTKLGINVFLFNYRGYGRTKGYPSPSANNLDGMAIAAYLRRERGITRLAIHGESIGGMVATYVAKHAE 447          
BLAST of mRNA_L-elsbetiae_contig17029.4709.1 vs. uniprot
Match: A0A7S2RNC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RNC6_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 2.880e-17
Identity = 38/65 (58.46%), Postives = 49/65 (75.38%), Query Frame = 1
Query:    1 VSFYTSVGCDVFLFNYRGYGRSGGRASPDTINKDVREVVEYLREQVGVSRLAVHGESIGGVAAAS 195
            + FYT +GC V ++NYRGYGRS G  SP + N D+ E+V++LRE  GV R+AVHGESIGG+ A S
Sbjct:  359 IQFYTEMGCQVIVWNYRGYGRSTGLPSPASNNADIAELVQFLRETCGVPRVAVHGESIGGMVACS 423          
BLAST of mRNA_L-elsbetiae_contig17029.4709.1 vs. uniprot
Match: A0A2D4C8H3_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8H3_PYTIN)

HSP 1 Score: 83.6 bits (205), Expect = 3.970e-17
Identity = 39/68 (57.35%), Postives = 49/68 (72.06%), Query Frame = 1
Query:    7 FYTSVGCDVFLFNYRGYGRSGGRASPDTINKDVREVVEYLREQVGVSRLAVHGESIGGVAAASVARHS 210
            FYT +GCDV LFNYRGYGRS G  SP   + D   +V+YL+ + GV+RL VHGESIGG+ A  +A H+
Sbjct:  811 FYTDLGCDVLLFNYRGYGRSKGEPSPAAHSADGLAIVQYLQSRRGVTRLGVHGESIGGLVATYLAHHA 878          
BLAST of mRNA_L-elsbetiae_contig17029.4709.1 vs. uniprot
Match: T0QHD2_SAPDV (AB hydrolase-1 domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QHD2_SAPDV)

HSP 1 Score: 82.4 bits (202), Expect = 9.980e-17
Identity = 38/71 (53.52%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 VSFYTSVGCDVFLFNYRGYGRSGGRASPDTINKDVREVVEYLREQVGVSRLAVHGESIGGVAAASVARHSE 213
            + FYT +G +VFLFNYRGYGR+ G  SP   N D   V  YLR +  + RLA+HGESIGG+ A  VA+H++
Sbjct:  375 IQFYTKLGINVFLFNYRGYGRTKGYPSPHANNLDGMAVAAYLRNEQSIRRLAIHGESIGGMVATHVAKHAD 445          
BLAST of mRNA_L-elsbetiae_contig17029.4709.1 vs. uniprot
Match: A0A1W0A6L9_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A6L9_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 1.000e-16
Identity = 36/71 (50.70%), Postives = 52/71 (73.24%), Query Frame = 1
Query:    1 VSFYTSVGCDVFLFNYRGYGRSGGRASPDTINKDVREVVEYLREQVGVSRLAVHGESIGGVAAASVARHSE 213
            + FYT +G +VFLFNYRGYGR+ G  SP+  N+D   +V +L +  G+ R+A+HGESIGG+ A  VA+++E
Sbjct:  366 IQFYTKLGINVFLFNYRGYGRTKGYPSPEANNRDGMAIVSFLYKDCGIKRIAIHGESIGGMVATYVAKNAE 436          
BLAST of mRNA_L-elsbetiae_contig17029.4709.1 vs. uniprot
Match: A0A067CE07_SAPPC (AB hydrolase-1 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CE07_SAPPC)

HSP 1 Score: 82.0 bits (201), Expect = 1.370e-16
Identity = 38/71 (53.52%), Postives = 48/71 (67.61%), Query Frame = 1
Query:    1 VSFYTSVGCDVFLFNYRGYGRSGGRASPDTINKDVREVVEYLREQVGVSRLAVHGESIGGVAAASVARHSE 213
            + FYT +G +VFLFNYRGYGR+ G  SP   N D   V  YLR    + RLA+HGESIGG+ A  VA+H++
Sbjct:  378 IQFYTKLGINVFLFNYRGYGRTKGYPSPHANNLDGMAVAAYLRNDKSIQRLAIHGESIGGMVATHVAKHAD 448          
BLAST of mRNA_L-elsbetiae_contig17029.4709.1 vs. uniprot
Match: A0A835YTB0_9STRA (Hydrolase_4 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTB0_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 6.530e-16
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    4 SFYTSVGCDVFLFNYRGYGRSGGRASPDTINKDVREVVEYLREQVGVSRLAVHGESIGGVAAASVA 201
            S+Y+++GC VFLFNYRG+GRS G  +P  +  D  E V+YLRE+ G+  + VHGESIGG+ AA+ A
Sbjct:  360 SYYSAIGCHVFLFNYRGFGRSQGVPTPARLQADACEAVQYLRERQGMQHVMVHGESIGGMVAAAAA 425          
BLAST of mRNA_L-elsbetiae_contig17029.4709.1 vs. uniprot
Match: K3WPB4_GLOUD (AB hydrolase-1 domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WPB4_GLOUD)

HSP 1 Score: 79.7 bits (195), Expect = 8.910e-16
Identity = 36/71 (50.70%), Postives = 49/71 (69.01%), Query Frame = 1
Query:    1 VSFYTSVGCDVFLFNYRGYGRSGGRASPDTINKDVREVVEYLREQVGVSRLAVHGESIGGVAAASVARHSE 213
            + FYT + C V ++NYRGYGR+ G  SP   N D   +VEYL+ Q G+ ++AVHGESIGG+ A  +A HS+
Sbjct:  362 IKFYTELDCHVLIYNYRGYGRNKGSPSPYEHNMDGMAIVEYLKVQRGIKKIAVHGESIGGLVATYLASHSK 432          
BLAST of mRNA_L-elsbetiae_contig17029.4709.1 vs. uniprot
Match: A0A6G0WU86_9STRA (AB hydrolase-1 domain-containing protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WU86_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 1.660e-15
Identity = 37/70 (52.86%), Postives = 50/70 (71.43%), Query Frame = 1
Query:    1 VSFYTSVGCDVFLFNYRGYGRSGGRASPDTINKDVREVVEYLREQVGVSRLAVHGESIGGVAAASVARHS 210
            + FYT  G +VF+FNYRGYGR  G  SP   N D   ++E+L+ + G++R+AVHGESIGG+ A  VARH+
Sbjct:  394 IQFYTKFGINVFVFNYRGYGRCKGYPSPHANNMDGMAIIEHLKSR-GITRIAVHGESIGGMVATHVARHA 462          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17029.4709.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L6P2_9PHAE2.400e-3388.73AB hydrolase-1 domain-containing protein n=1 Tax=E... [more]
A0A1V9YDH8_9STRA6.060e-1854.93Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A7S2RNC6_9STRA2.880e-1758.46Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A2D4C8H3_PYTIN3.970e-1757.35Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
T0QHD2_SAPDV9.980e-1753.52AB hydrolase-1 domain-containing protein n=1 Tax=S... [more]
A0A1W0A6L9_9STRA1.000e-1650.70Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A067CE07_SAPPC1.370e-1653.52AB hydrolase-1 domain-containing protein n=2 Tax=S... [more]
A0A835YTB0_9STRA6.530e-1654.55Hydrolase_4 domain-containing protein n=1 Tax=Trib... [more]
K3WPB4_GLOUD8.910e-1650.70AB hydrolase-1 domain-containing protein n=1 Tax=G... [more]
A0A6G0WU86_9STRA1.660e-1552.86AB hydrolase-1 domain-containing protein n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17029contigL-elsbetiae_contig17029:2971..3183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score82.8
Seed ortholog evalue7.1e-14
Seed eggNOG ortholog112098.XP_008613740.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein depalmitoylation
EggNOG OGsCOG1073@1,KOG4391@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size213
Cds size213
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815709.2817717-CDS-L-elsbetiae_contig17029:2970..31831622815709.2817717-CDS-L-elsbetiae_contig17029:2970..3183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17029 2971..3183 -
1691683051.6683083-CDS-L-elsbetiae_contig17029:2970..31831691683051.6683083-CDS-L-elsbetiae_contig17029:2970..3183Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17029 2971..3183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17029.4709.1prot_L-elsbetiae_contig17029.4709.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17029 2971..3183 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17029.4709.1

>prot_L-elsbetiae_contig17029.4709.1 ID=prot_L-elsbetiae_contig17029.4709.1|Name=mRNA_L-elsbetiae_contig17029.4709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=71bp
VSFYTSVGCDVFLFNYRGYGRSGGRASPDTINKDVREVVEYLREQVGVSR
LAVHGESIGGVAAASVARHSE
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mRNA from alignment at L-elsbetiae_contig17029:2971..3183-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17029.4709.1 ID=mRNA_L-elsbetiae_contig17029.4709.1|Name=mRNA_L-elsbetiae_contig17029.4709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=213bp|location=Sequence derived from alignment at L-elsbetiae_contig17029:2971..3183- (Laminarionema elsbetiae ELsaHSoW15)
GTGTCTTTCTACACCTCCGTCGGCTGCGACGTCTTCCTGTTCAACTACCG CGGCTACGGCCGCTCCGGCGGCCGCGCCTCCCCCGACACCATCAACAAGG ACGTGCGGGAGGTGGTGGAGTACCTCCGAGAGCAGGTCGGGGTGTCCCGC CTGGCGGTCCACGGGGAGAGCATCGGAGGCGTCGCCGCGGCCAGCGTCGC CAGACATTCGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17029:2971..3183-

>mRNA_L-elsbetiae_contig17029.4709.1 ID=mRNA_L-elsbetiae_contig17029.4709.1|Name=mRNA_L-elsbetiae_contig17029.4709.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=426bp|location=Sequence derived from alignment at L-elsbetiae_contig17029:2971..3183- (Laminarionema elsbetiae ELsaHSoW15)
GTGTCTTTCTACACCTCCGTCGGCTGCGACGTCTTCCTGTTCAACTACCG
CGGCTACGGCCGCTCCGGCGGCCGCGCCTCCCCCGACACCATCAACAAGG
ACGTGCGGGAGGTGGTGGAGTACCTCCGAGAGCAGGTCGGGGTGTCCCGC
CTGGCGGTCCACGGGGAGAGCATCGGAGGCGTCGCCGCGGCCAGCGTCGC
CAGACATTCGGAGGTGTCTTTCTACACCTCCGTCGGCTGCGACGTCTTCC
TGTTCAACTACCGCGGCTACGGCCGCTCCGGCGGCCGCGCCTCCCCCGAC
ACCATCAACAAGGACGTGCGGGAGGTGGTGGAGTACCTCCGAGAGCAGGT
CGGGGTGTCCCGCCTGGCGGTCCACGGGGAGAGCATCGGAGGCGTCGCCG
CGGCCAGCGTCGCCAGACATTCGGAG
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