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Homology
BLAST of mRNA_L-elsbetiae_contig1702.4704.1 vs. uniprot
Match: A0A6H5KJX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJX9_9PHAE) HSP 1 Score: 196 bits (499), Expect = 3.090e-54 Identity = 123/226 (54.42%), Postives = 135/226 (59.73%), Query Frame = 1
Query: 1 EGSRAAAKAVEGFIRKNIEAYFGCWTSTYTLFSLDPRLSKTAKRLASGLGINLDDVLAVPMRDRVSGDGFLYHIPALERLVGLAPREGRRGEEEEGGRGGTESGDXXXXXXXXXXXXSQLVLLGDSRVPRSEGLGAALRLACEAANRNWSLAEAEASVLQAFRVFVEVCVLRRQPGYRPAPLAAAPP---VPAGGDPG--TGGGHSSSDLGQVSPARTPVV-NRGG 660
EGSRAAAKAVEGFIR NIE YFGCWTSTYTLFSLDPRL+KTAK+LAS LGI+LDD L VP R+RV GDGFLYHIP LERLVGL P EGR SEG G +L+L A V++AFRVFVEVCVLRRQPGY+PAP A P A G+PG D G+VSPARTPVV +RGG
Sbjct: 123 EGSRAAAKAVEGFIRTNIEEYFGCWTSTYTLFSLDPRLAKTAKKLASDLGISLDDTLVVPTRERVFGDGFLYHIPGLERLVGLPPHEGRA----------------------------------------SEGGGDSLQLV--------------AVVMRAFRVFVEVCVLRRQPGYQPAPAPAPPSSSSTQASGNPGGXXXXXXXGGDPGEVSPARTPVVVSRGG 294
BLAST of mRNA_L-elsbetiae_contig1702.4704.1 vs. uniprot
Match: D7FGV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV4_ECTSI) HSP 1 Score: 167 bits (423), Expect = 3.130e-44 Identity = 112/226 (49.56%), Postives = 121/226 (53.54%), Query Frame = 1
Query: 1 EGSRAAAKAVEGFIRKNIEAYFGCWTSTYTLFSLDPRLSKTAKRLASGLGINLDDVLAVPMRDRVSGDGFLYHIPALERLVGLAPREGRRGEEEEGGRGGTESGDXXXXXXXXXXXXSQLVLLGDSRVPRSEGLGAALRLACEAANRNWSLAEAEASVLQAFRVFVEVCVLRRQPGYRPAPLAAAPPVPAGGDPGTGGGHSSS-----DLGQVSPARTPVV-NRGG 660
EGSRAAAKAVEGFIR NIE YFGCWTSTYTLFSLDPRL+KTAK+LAS LGI+LDD LAVP R+ S G AALRLACEAANRNWSLAEAEA V++AFRVFVEVCVLRRQPGY+ AP A D G+VSPARTPVV +RGG
Sbjct: 542 EGSRAAAKAVEGFIRTNIEEYFGCWTSTYTLFSLDPRLAKTAKKLASDLGISLDDTLAVPTRE-------------------------------------------------------------------SGGRAAALRLACEAANRNWSLAEAEAVVMRAFRVFVEVCVLRRQPGYQAAPAPAPXXXXXXXXXXXXXXXXXXXXXXXDPGEVSPARTPVVVSRGG 700
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 5 |
Model size | 664 |
Cds size | 660 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815708.9697235-CDS-L-elsbetiae_contig1702:18359..18473 | 1622815708.9697235-CDS-L-elsbetiae_contig1702:18359..18473 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1702 18360..18473 + |
1691683051.521921-CDS-L-elsbetiae_contig1702:18359..18473 | 1691683051.521921-CDS-L-elsbetiae_contig1702:18359..18473 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1702 18360..18473 + |
1622815708.9817119-CDS-L-elsbetiae_contig1702:20354..20431 | 1622815708.9817119-CDS-L-elsbetiae_contig1702:20354..20431 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1702 20355..20431 + |
1691683051.532487-CDS-L-elsbetiae_contig1702:20354..20431 | 1691683051.532487-CDS-L-elsbetiae_contig1702:20354..20431 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1702 20355..20431 + |
1622815708.9942665-CDS-L-elsbetiae_contig1702:21768..21969 | 1622815708.9942665-CDS-L-elsbetiae_contig1702:21768..21969 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1702 21769..21969 + |
1691683051.5419652-CDS-L-elsbetiae_contig1702:21768..21969 | 1691683051.5419652-CDS-L-elsbetiae_contig1702:21768..21969 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1702 21769..21969 + |
1622815709.007693-CDS-L-elsbetiae_contig1702:22446..22519 | 1622815709.007693-CDS-L-elsbetiae_contig1702:22446..22519 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1702 22447..22519 + |
1691683051.5503623-CDS-L-elsbetiae_contig1702:22446..22519 | 1691683051.5503623-CDS-L-elsbetiae_contig1702:22446..22519 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1702 22447..22519 + |
1622815709.0199506-CDS-L-elsbetiae_contig1702:23645..23840 | 1622815709.0199506-CDS-L-elsbetiae_contig1702:23645..23840 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1702 23646..23840 + |
1691683051.5587115-CDS-L-elsbetiae_contig1702:23645..23840 | 1691683051.5587115-CDS-L-elsbetiae_contig1702:23645..23840 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1702 23646..23840 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1702.4704.1 >prot_L-elsbetiae_contig1702.4704.1 ID=prot_L-elsbetiae_contig1702.4704.1|Name=mRNA_L-elsbetiae_contig1702.4704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=220bp
EGSRAAAKAVEGFIRKNIEAYFGCWTSTYTLFSLDPRLSKTAKRLASGLG INLDDVLAVPMRDRVSGDGFLYHIPALERLVGLAPREGRRGEEEEGGRGG TESGDGSGGGGGGSGSGSQLVLLGDSRVPRSEGLGAALRLACEAANRNWS LAEAEASVLQAFRVFVEVCVLRRQPGYRPAPLAAAPPVPAGGDPGTGGGH SSSDLGQVSPARTPVVNRGG back to topmRNA from alignment at L-elsbetiae_contig1702:18360..23842+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1702.4704.1 ID=mRNA_L-elsbetiae_contig1702.4704.1|Name=mRNA_L-elsbetiae_contig1702.4704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5483bp|location=Sequence derived from alignment at L-elsbetiae_contig1702:18360..23842+ (Laminarionema elsbetiae ELsaHSoW15) GAGGGATCGAGGGCGGCCGCTAAGGCCGTCGAAGGGTTCATCCGTAAGAA
CATCGAGGCCTACTTCGGCTGCTGGACGTCCACCTACACGCTCTTCAGCC
TCGACCCTCGCCTCGTGAGTTGGGGTTGGTCCATTGCTCTGGGTTGCTTT
GTTGCTCTGGGTTCGTTCGCCCTTTATTGTATTTTTTTATCGGCTTTATT
TTTATTTATTTTTGCGATTTGAAATGGAGTTGGTTCGTGGGCTCAGGCAG
TGGTCATAGCATGGAACGCTCAGCGCTTTTGACTTGTTTTGTTTTTTCAC
GTTTCACTTGTGGCTGACAGCGTGTTGTTGTTGTTGTTGTTGTTGTTGTT
TCTTCACATTAAAAACCGTTCCGATCTCTCCACCTAGTACCTCCCTATGT
CCGTACAACCCAACACTTGATGCGGTCAATTCCCGTGGTCACAGGATAAC
TTATGCGTGTGCTTGTGTTGGAGTCGTCGTGTGATATATAGTATGTCTCC
GGCGCCGCCAGTGCCGTTTCTAGTCCCTCTAATAACCCTGATCTTGTCTC
AGTGGCGTTAAGGTTTTGTGAGAACGGACAAATCAATGTCGCGGAGCACG
TTTGCAATGCGAGTGTGACGCTGCATGCTCGGTGGGGCTTCGTGCGAAGC
GTAAGCTGCTTCTTATTGGCGAAAGCTTCTGGACCCTTCTTGAGTGCTCG
AAATAATTTTTGGTTGGTTTGCCTTCCGTGTGTATGCGGCCTTTTGTTCC
GAGAGATCAATTCATCGACGTAACCCCAACCTTTTTCGCAGAGGGGGGTG
GTAGGGGCCTCGGAACTCTTGTTGCTGTTGTTGTTGTTCTCACATTAGCT
CTCTAGCCCAAAACATATGTGTGACCATGGCTCAGTGTTCTGGCAAGATG
CCGTCGTGGCAGAGAAACCGTCGAGCACTGGAAAAAAATGCGAGCCACAA
AAGTGCGTACCATGAGCGTGATGTGTGGCATGTGACATGTGGTACGCATC
TGATACATGCTGTGCAGTGTGTGATATGTGATGCCACGTGATATCCTCAG
CGAATGGATGTCTCCTACACCCCCCTATGTGAGACTTAGATCGTTGTGAT
TGCGCCAGGCATTTCCCTCTTCACTTGCTTGCGGGACCCCTCTGCCTCTG
TTTGTGGTTGCCGCGGGGTACACGCATAATTTGTCGTTCGCGACTCGATC
ACAGGTTCAGGTGTGTACCGTGTACGACACAAGATAACACACCCCCCGGA
CCGATTTTCAAAGCTCAAGCACTATACAGCGAGAAGAGTATCAGTCCCGA
AAAGGGCGGCGTTGGAAAGATCTCATCAAGAGCTGTCCGAAAACGTGTCG
TTTTGTATTGGAATCATACTCCTTGCGGAGTAACCGAGCTTTGAAAATCG
GTCCAGGAAAGTGTGTTATCTTGTGTCGTATACGGTACGTACACAAAGCT
TGTTTCGTCAAGTCAGTTTTATTTTATTTGACTGAAGATCGCCCCACATC
TTGTCTGGCTGTTTCGCAATCAATACACCAACCCAACGACAACAAAATCA
CCGATCACTACACCGATCCAACGACAACAAAATCACCGATCAGCACACCG
ATCCAATGACAACAAAATCACCGATCAGCACACCAACCCAACGACAACAC
AATCACCGATCAATACTCGAGCCCAACGACAACAAAATCACAACCCGACC
GGACGATGCTGGGACGTGATGCGGTTGGATGCGATGCGACTGGTGAAATG
GGATGGGATGGGATGGGATGGGATGGGATAGGATAGGATGGGGTGATCGA
CCGAACGGACCGACCAAGCGAGAAAAGTCGGCTACTGCGGCGGTGACTCC
CGGAAAAGGCATCATCTTTCCTGAACAAGTTTGAAATTCGAACTGGTTCT
AAAATTTAAAATTCGAACTAATTTTTTTTTTTTTTTAATTAACCAACCTT
TTTTTCACTGTCGTTTTTCGCTTTTTTGTTTTTTTTGGCAAAAAGTCCAA
GACGGCCAAGCGGCTCGCGTCGGGCCTGGGGATCAACCTCGACGATGTCC
TCGCGGTGCCGATGCGGGATAGGTACGTGCGTGGTGTTTGCTGGTGTCTG
GGCATGAGAGAGACATCTGGGCATGAGAAGACAGAGAGATAGCGTGCACG
ACTGGCGGTGTCAAGTGTCCAGGAGTACTTTGGCAGCCCTAATTCTGCGG
CGTGTTGGTGTTGCGGGGGGCGTCCGAGTAGTTTTCACCAATTTTCTTGG
TGTGTGCAAGGACAAGGACGGAGAGGTGCGTGGATGCTTCGAGGAGGCGC
ATGGGTGCGGTGGCCGTCTCGTCTGCCGCAAGAATTAGGGCTTCCCGTCA
TGCTGATGGACGAGCCGACGGGAGCACCTTGCTCCCCCCCCCCCCCCCCC
CCCCCCCCCGCCCCAGAAAAAAAAAAACACGATCACATCATAATTTTTGG
GGCCCCCGTGTGGGGCGCGTTCCGTTCTTGGGGGGGGGNNNNNNNNNNCC
GCCTCGCCTCCCGCAAAAATTGGGGCTTCCCGCCAGGGTGGGGGCGGACC
CCACGGGAGCACCTGGCTCCCCCCCCCCCCCCCCCACGACCGCGGCATGA
GAAACATAGATACATGTGCATATCATATTTGTGTGACCCCCGGTTGAGTC
GTCTAGCTAGTCGTGCGGGAGGAAGGGGCCCAGTGGGGCAGACGACGAAT
AAGCCAATAATGGGAGACAAGATATAATGTATATAACTGTTGTATATATA
TAACTTCGTATACTGTCAGTAGTAACGTACCTTTATTTTCCTTGTGTGCT
TTGTTTGAACGATAGCAAAGAGACAGACGAAGACAAAATACGAGCAGTTG
CAATGCTTGCGTTCTCCCTCTCCCTCCTGCGTACAGCACGGAGTACCCAC
ACGTCGCTCGCTTGTCACGTCACGTCACGTCACTTCGACAGAGACGAGAC
GAGACGCGATGGGATGCGCGTGAGACCGTAGGTGACACAAGATACCACCC
CCTTCCCCCTCCCCTGGACATACTTTCAAAGCTTGTTTCCTGCCCAGCAA
GAAGAGCGCCAAGTGCCGAAAGGGGGTGGCGTTGGAAAGATCTAGTCGGG
GGCTGTCCGAAAGTGTGTCGTTTGCTGCTGACACCCTTTTCGTTGCTGAG
TAATGGAGCTCTAAAACTCGGTCCAGGGGGGGGGGTATCTTGTGTCACGT
ACAGTAGTGGAGCGAGGTCTAGGGTACAACCAACCCCCCGTTCATACCCG
CCTGCCCTCCTATGAGCATTTATTGAAGCCAAAATAAAACCACTAGACCG
GTCAGCAGTGCTAACCGGTCTACTGGTTTGAGCTTGGCTTCTAAGTATAA
ACCCTCACCACGCATGCCCTCGGACGTGACGTGAAACGACGTGTGACACG
GGTGCGCAGAGTTTCCGGGGACGGGTTCCTGTACCACATCCCCGCTCTGG
AGCGGCTGGTGGGGCTCGCCCCCCGCGAGGGTCGTAGGGGGGAGGAGGAG
GAAGGGGGGCGAGGAGGAACAGAGAGTGGGGATGGCAGCGGCGGCGGTGG
CGGCGGCAGCGGCAGCGGCTCGCAGCTGGTCTTGCTGGGCGATTCGCGGG
TCCCGAGGAGGTAAGTTTTTGTTTTTTTTCATGAGATATGCTGAGGCTGC
GTTTTTCGCAGGTGGCGGCGCAACGCCGACACGATACTATTAGTATTATG
TACCATGTAGGACAGACTCTACACGTATTGCGTGGTCGCTAGAATTTGAA
GATGGATCGGTAGCGCTGTCTGTCTCAGGCCGTCGATGTTGTTTTTCGTT
CGCTTTCCACCTGGTCGAACCTGTGAACGTTACGAACAAATAGTAAATCC
CTCGTCTGAGGTAAAACAGACAGCAAATAGTGTCACTTATCCGTGAGTGG
ATGCCCAAATAGGGTGTAGGGGGCACTCGAAAGCGTGCACGCCTGGGAAC
AGCCCCTCTGACGGCGAATACCATGAGATTCGCGCCAAGACGAAACGTTT
TTCTTGTTTAAATTGTCGCCCCTTTTTCATTGCGCGTTGGACCGGTCTGT
TTTTTCATCGCATGCTCTCTCGTTGACGGAACAGCAGCGAAGGGCTTGGG
GCGGCCTTGAGGCTAGCGTGCGAAGCTGCCAACCGGAACTGGTCGCTGGC
GGAGGCAGAGGTCTGTTGTTGTTGTTGTTTGTTTCTGTTGTTATTGTTGC
TGCTGTCGTTGTTGTTGTTTGTTGCTGTTGTTGTTTTTTGTTGCTGGGCG
TTGGTTTGGTCGTGATGCGGAGATCGAGGTCGTCCTGTAGGTCATTCGAT
GGCGGTCACGTTGCGTCGACCATGCAGCAGTATCAATCATGTCTTGATCC
TACATCTCACATTCGTTCCTGGAAAATTGAAAGCGATTTCGTTAGTAACT
GTTACTTCGACTTTCATTGTTGACGAGGGTGGGGAGTGCTGAACCCTGCT
CGCGATAAAACATCCAAGGCAGGCACCGCAGGAGGGGTCCAATCCCCCCT
CCTGTGTGACCCCGGTTGGGTGGTCTAGCTAGTCGTAGTGGAGGAAGGGG
GCCAGTGGTGCAGACGACAAATATGCCAATGATGGGAGCAAGAAAACAAG
AAAAATGTATGTATGAGCCATCATACTCGCTTCCCGCCTTCACTTCCACC
AAACCCCACCGCTGCCATGCCAACCTCACTTCTGTGTTCCGCGAATCGAG
CACACAATGGACATACCCCCGTAACCCTGTTTGCTGGCCCCGTTTCGTCA
CGCCGGAACGGGCATCTACCGTAGATACGCAAGATAACACACCCCCCCTT
GACATATTTTCAAAGCTCGATTCATCCGTCGCGAAGAGGGCGTTAAATAG
CACCAAACAGCACATTTCCGGACAGTCCTTGGCTAGATATTTCCAACGCC
ACCCCCTTTCGGCACTGGCACTCTTCTTGCTGGGGAAGGAATCGAGCTTT
GAAAATCTGTCCAGGGGGGTATCTTGTGGCACCTACGAATCCCTACCTCG
ACCATTGTTTACCGTTCCACCATCTTCCATCGCCGCGTACCTATATACAT
GTTTTTTTTCCCTCCGCGGCGTGAAGTGTGCCCTGTTTATTTTTGACCAC
GAGGCCCCCATGGATATATTTTGAACTAGAAAGCTACTGTGAGAAGAAAA
ACAACAACAGCGACATCTACGTTTTTTACACGCACCAGCATCCCCCCTGC
TGTTGCTCCTTCTTGCCGCGCCCGCACCCCCACCCATCCCCGCGTAACCC
CTGTCCCCCCTCACCTCCCTGACGCTATTTGAAAAGGCGTCGGTTCTGCA
GGCCTTCCGTGTTTTCGTAGAGGTGTGCGTTCTGCGCCGACAGCCCGGCT
ACCGACCCGCCCCCCTCGCCGCGGCGCCCCCCGTCCCGGCTGGGGGGGAC
CCCGGCACCGGCGGGGGGCACAGCAGCAGCGATCTGGGGCAGGTGTCGCC
GGCCCGCACGCCTGTGGTCAACAGAGGAGGGGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1702:18360..23842+ >mRNA_L-elsbetiae_contig1702.4704.1 ID=mRNA_L-elsbetiae_contig1702.4704.1|Name=mRNA_L-elsbetiae_contig1702.4704.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1320bp|location=Sequence derived from alignment at L-elsbetiae_contig1702:18360..23842+ (Laminarionema elsbetiae ELsaHSoW15) GAGGGATCGAGGGCGGCCGCTAAGGCCGTCGAAGGGTTCATCCGTAAGAA CATCGAGGCCTACTTCGGCTGCTGGACGTCCACCTACACGCTCTTCAGCC TCGACCCTCGCCTCGAGGGATCGAGGGCGGCCGCTAAGGCCGTCGAAGGG TTCATCCGTAAGAACATCGAGGCCTACTTCGGCTGCTGGACGTCCACCTA CACGCTCTTCAGCCTCGACCCTCGCCTCTCCAAGACGGCCAAGCGGCTCG CGTCGGGCCTGGGGATCAACCTCGACGATGTCCTCGCGGTGCCGATGCGG GATAGTCCAAGACGGCCAAGCGGCTCGCGTCGGGCCTGGGGATCAACCTC GACGATGTCCTCGCGGTGCCGATGCGGGATAGAGTTTCCGGGGACGGGTT CCTGTACCACATCCCCGCTCTGGAGCGGCTGGTGGGGCTCGCCCCCCGCG AGGGTCGTAGGGGGGAGGAGGAGGAAGGGGGGCGAGGAGGAACAGAGAGT GGGGATGGCAGCGGCGGCGGTGGCGGCGGCAGCGGCAGCGGCTCGCAGCT GGTCTTGCTGGGCGATTCGCGGGTCCCGAGGAGAGTTTCCGGGGACGGGT TCCTGTACCACATCCCCGCTCTGGAGCGGCTGGTGGGGCTCGCCCCCCGC GAGGGTCGTAGGGGGGAGGAGGAGGAAGGGGGGCGAGGAGGAACAGAGAG TGGGGATGGCAGCGGCGGCGGTGGCGGCGGCAGCGGCAGCGGCTCGCAGC TGGTCTTGCTGGGCGATTCGCGGGTCCCGAGGAGCGAAGGGCTTGGGGCG GCCTTGAGGCTAGCGTGCGAAGCTGCCAACCGGAACTGGTCGCTGGCGGA GGCAGAGCGAAGGGCTTGGGGCGGCCTTGAGGCTAGCGTGCGAAGCTGCC AACCGGAACTGGTCGCTGGCGGAGGCAGAGGCGTCGGTTCTGCAGGCCTT CCGTGTTTTCGTAGAGGTGTGCGTTCTGCGCCGACAGCCCGGCTACCGAC CCGCCCCCCTCGCCGCGGCGCCCCCCGTCCCGGCTGGGGGGGACCCCGGC ACCGGCGGGGGGCACAGCAGCAGCGATCTGGGGCAGGTGTCGCCGGCCCG CACGCCTGTGGTCAACAGAGGAGGGGCGTCGGTTCTGCAGGCCTTCCGTG TTTTCGTAGAGGTGTGCGTTCTGCGCCGACAGCCCGGCTACCGACCCGCC CCCCTCGCCGCGGCGCCCCCCGTCCCGGCTGGGGGGGACCCCGGCACCGG CGGGGGGCACAGCAGCAGCGATCTGGGGCAGGTGTCGCCGGCCCGCACGC CTGTGGTCAACAGAGGAGGG back to top
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