mRNA_L-elsbetiae_contig1702.4702.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1702.4702.1
Unique NamemRNA_L-elsbetiae_contig1702.4702.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1702.4702.1 vs. uniprot
Match: A0A6H5KHV9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHV9_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 6.980e-29
Identity = 61/68 (89.71%), Postives = 64/68 (94.12%), Query Frame = 2 
Query:    2 AGGFVTGWPFVSGTPGNEVPSFALVAAALSSFPSRRLASDAASPDPCAERLPALANSTLASLVRCGFP 205
            AGGFVTGWPFVSGTPG+EVPSFA+VAAALSSFP RRLASD +S DPCAERLPALANSTLASLVR GFP
Sbjct:  207 AGGFVTGWPFVSGTPGSEVPSFAVVAAALSSFPPRRLASDPSSLDPCAERLPALANSTLASLVRSGFP 274
[Close]
BLAST of mRNA_L-elsbetiae_contig1702.4702.1 vs. uniprot
Match: D7FGV4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGV4_ECTSI)

HSP 1 Score: 115 bits (287), Expect = 6.540e-28
Identity = 61/68 (89.71%), Postives = 63/68 (92.65%), Query Frame = 2 
Query:    2 AGGFVTGWPFVSGTPGNEVPSFALVAAALSSFPSRRLASDAASPDPCAERLPALANSTLASLVRCGFP 205
            AGGFVTGWPFVSGT G+EVPSFALVAAALSSFP RRLASD +S DPCAERLPALANSTLASLVR GFP
Sbjct:  189 AGGFVTGWPFVSGTSGSEVPSFALVAAALSSFPPRRLASDPSSRDPCAERLPALANSTLASLVRSGFP 256
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1702.4702.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KHV9_9PHAE6.980e-2989.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGV4_ECTSI6.540e-2889.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1702contigL-elsbetiae_contig1702:14832..15620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size269
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.746299-CDS-L-elsbetiae_contig1702:14831..148861622815708.746299-CDS-L-elsbetiae_contig1702:14831..14886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1702 14832..14886 +
1691683051.3925667-CDS-L-elsbetiae_contig1702:14831..148861691683051.3925667-CDS-L-elsbetiae_contig1702:14831..14886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1702 14832..14886 +
1622815708.7594373-CDS-L-elsbetiae_contig1702:15407..156191622815708.7594373-CDS-L-elsbetiae_contig1702:15407..15619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1702 15408..15619 +
1691683051.4034626-CDS-L-elsbetiae_contig1702:15407..156191691683051.4034626-CDS-L-elsbetiae_contig1702:15407..15619Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1702 15408..15619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1702.4702.1prot_L-elsbetiae_contig1702.4702.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1702 14832..15619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1702.4702.1

>prot_L-elsbetiae_contig1702.4702.1 ID=prot_L-elsbetiae_contig1702.4702.1|Name=mRNA_L-elsbetiae_contig1702.4702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
SRGLRDWVAVRFRHPGERGPVLRPRGGGALVLPLPPPRLRRGIPGPLRGT
PSCPGQLHARFSRALRLPVQCRRRRQRGGELRAADGDGG
back to top

mRNA from alignment at L-elsbetiae_contig1702:14832..15620+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1702.4702.1 ID=mRNA_L-elsbetiae_contig1702.4702.1|Name=mRNA_L-elsbetiae_contig1702.4702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=789bp|location=Sequence derived from alignment at L-elsbetiae_contig1702:14832..15620+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAGGGGGCTTCGTGACTGGGTGGCCGTTCGTTTCCGGCACCCCGGGGA
ACGAGGTGAGTCGCCAAGTTGTCACATGTGACGTTGTCGATGGCTCGTTT
CGTGGGATTCTAGTTACTGCTGTCTGCGGTACATACTGTTGAATGGCGAT
TTCTTCGCCCCGAGCCCCTTTTCCACCCTGTAGAGGCGGCGCAGTCCTGT
TTCTTTTGGGGCGAGGGAAAATGTGGTTCGGCTCTACCCTTTCGGTATCA
ATTGCTGCGTTAGGACACAACCGATGTTGAGAGAGAGAGGTACACTATTT
ATTAGGAGTACTTTTTTGAAGGATGTTTTTGGAGTAGAGAGCTAATGTGA
GAATCAACAACACTTTTCTCGCAACGACCGAGCCGCTCTCTGACCGAAGA
ACGCCTCGCGTCTCAAACCTCCCCGCGTGCGCTGTCAAAAGAAAAATGGC
GCACGCTTGCCTTATGTACCCAAGAAACCTTTTGACCTTTCCCCGCCGTC
ATCCCCCCGCCGCCGTCTCCATGCCCCCATCGCCGCCGCCGCGACGCAAC
GCAACGCCACGCGTTCACCCCGCCAGGTCCCGTCCTTCGCCCTCGTGGCG
GCGGCGCTCTCGTCCTTCCCCTCCCGCCGCCTCGCCTCCGACGCGGCATC
CCCGGACCCCTGCGCGGAACGCCTTCCTGCCCTGGCCAACTCCACGCTCG
CTTCTCTCGTGCGCTGCGGCTTCCCGTCCAGTGTCGGCGGCGGCGGCAGC
GGGGGGGTGAGCTCCGGGCCGCCGACGGTGATGGCGGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1702:14832..15620+

>mRNA_L-elsbetiae_contig1702.4702.1 ID=mRNA_L-elsbetiae_contig1702.4702.1|Name=mRNA_L-elsbetiae_contig1702.4702.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig1702:14832..15620+ (Laminarionema elsbetiae ELsaHSoW15)
AGCAGGGGGCTTCGTGACTGGGTGGCCGTTCGTTTCCGGCACCCCGGGGA
ACGAGAGCAGGGGGCTTCGTGACTGGGTGGCCGTTCGTTTCCGGCACCCC
GGGGAACGAGGTCCCGTCCTTCGCCCTCGTGGCGGCGGCGCTCTCGTCCT
TCCCCTCCCGCCGCCTCGCCTCCGACGCGGCATCCCCGGACCCCTGCGCG
GAACGCCTTCCTGCCCTGGCCAACTCCACGCTCGCTTCTCTCGTGCGCTG
CGGCTTCCCGTCCAGTGTCGGCGGCGGCGGCAGCGGGGGGGTGAGCTCCG
GGCCGCCGACGGTGATGGCGGGGTCCCGTCCTTCGCCCTCGTGGCGGCGG
CGCTCTCGTCCTTCCCCTCCCGCCGCCTCGCCTCCGACGCGGCATCCCCG
GACCCCTGCGCGGAACGCCTTCCTGCCCTGGCCAACTCCACGCTCGCTTC
TCTCGTGCGCTGCGGCTTCCCGTCCAGTGTCGGCGGCGGCGGCAGCGGGG
GGGTGAGCTCCGGGCCGCCGACGGTGATGGCGGG
back to top