mRNA_L-elsbetiae_contig17018.4700.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig17018.4700.1
Unique NamemRNA_L-elsbetiae_contig17018.4700.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig17018.4700.1 vs. uniprot
Match: A0A6H5KUQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUQ6_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 2.950e-8
Identity = 27/36 (75.00%), Postives = 33/36 (91.67%), Query Frame = -2 
Query:  276 MSTLTDIFAVQDKISTKKNREEKDKDRGFRVASLFD 383
            MS LTDIF V+DK+S+KKNREEKDKD+GF++ SLFD
Sbjct:    1 MSALTDIFTVKDKVSSKKNREEKDKDKGFKITSLFD 36
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BLAST of mRNA_L-elsbetiae_contig17018.4700.1 vs. uniprot
Match: A0A835YZR3_9STRA (RRM domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZR3_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 1.200e-5
Identity = 25/43 (58.14%), Postives = 35/43 (81.40%), Query Frame = -2 
Query:  273 ERFVAHMSTLTDIFAVQDKISTKKNREEKDKDRGFRVASLFDG 401
            ERF+A + TLTDIF+VQDK++TK + EEK +  GF+++SLF G
Sbjct:  562 ERFIARVGTLTDIFSVQDKVTTKLSAEEKARATGFKLSSLFGG 604
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig17018.4700.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KUQ6_9PHAE2.950e-875.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YZR3_9STRA1.200e-558.14RRM domain-containing protein n=1 Tax=Tribonema mi... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig17018contigL-elsbetiae_contig17018:2683..3456 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size775
Cds size774
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.7092717-CDS-L-elsbetiae_contig17018:2682..34561622815708.7092717-CDS-L-elsbetiae_contig17018:2682..3456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17018 2683..3456 +
1691683051.3809726-CDS-L-elsbetiae_contig17018:2682..34561691683051.3809726-CDS-L-elsbetiae_contig17018:2682..3456Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig17018 2683..3456 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig17018.4700.1prot_L-elsbetiae_contig17018.4700.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig17018 2683..3456 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig17018.4700.1

>prot_L-elsbetiae_contig17018.4700.1 ID=prot_L-elsbetiae_contig17018.4700.1|Name=mRNA_L-elsbetiae_contig17018.4700.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=258bp
KAVSAPCRALGAEVGGVAPACEQVLSPSAGARARSLCSSAETVTSPLLSS
SARVGGTPVAPPPKAKENSPASATGPTAAAAAAGRSSAPASPSNSDATLK
PLSLSFSSLFFLVLILSCTAKMSVSVDMWATKRSFSLGAPALGPAASLAP
GRGAVSPSSGGGARCCCARSHGVGGTTPPPLPPSRVCSLLRSDAGGAFAF
APPTTLSRPAAPLSSADTGTGGAPDASPAGRAGAVPLSPPNRPAKTPRDR
CRMTKTR*
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mRNA from alignment at L-elsbetiae_contig17018:2683..3456+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig17018.4700.1 ID=mRNA_L-elsbetiae_contig17018.4700.1|Name=mRNA_L-elsbetiae_contig17018.4700.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig17018:2683..3456+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGCCGTCTCCGCCCCCTGCAGGGCGCTAGGGGCGGAAGTCGGGGGGGT
CGCCCCCGCCTGCGAGCAGGTGCTAAGCCCGTCTGCGGGCGCCCGCGCCC
GCTCACTCTGCTCTTCTGCCGAGACTGTGACGTCACCTTTGTTGTCTTCG
TCGGCACGCGTCGGTGGCACCCCAGTCGCCCCGCCGCCGAAGGCAAAGGA
GAACTCGCCCGCTTCCGCCACCGGGCCCACCGCCGCCGCCGCCGCCGCCG
GTAGATCTTCGGCCCCTGCAAGCCCGTCGAACAGCGACGCGACCCTGAAG
CCCCTGTCCTTGTCCTTCTCCTCCCTGTTCTTCTTGGTGCTGATCTTGTC
CTGCACCGCAAAGATGTCCGTCAGCGTCGACATGTGGGCGACGAAACGTT
CTTTTTCTCTGGGGGCTCCCGCCTTGGGCCCCGCTGCATCACTCGCCCCG
GGAAGGGGGGCAGTCTCTCCCTCATCAGGAGGCGGGGCCCGCTGCTGTTG
CGCCCGCTCGCACGGCGTGGGCGGAACCACACCCCCTCCACTGCCCCCCT
CCCGTGTCTGTTCGCTGTTAAGATCAGACGCCGGCGGCGCATTCGCATTC
GCGCCGCCGACGACGCTGTCCCGCCCAGCGGCGCCGCTCTCGAGCGCGGA
TACGGGAACAGGCGGAGCACCGGATGCCTCGCCGGCAGGGCGCGCGGGTG
CGGTACCACTGTCGCCGCCGAACAGGCCGGCCAAAACTCCAAGAGATCGC
TGCCGCATGACCAAAACGCGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig17018:2683..3456+

>mRNA_L-elsbetiae_contig17018.4700.1 ID=mRNA_L-elsbetiae_contig17018.4700.1|Name=mRNA_L-elsbetiae_contig17018.4700.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1548bp|location=Sequence derived from alignment at L-elsbetiae_contig17018:2683..3456+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGCCGTCTCCGCCCCCTGCAGGGCGCTAGGGGCGGAAGTCGGGGGGGT
CGCCCCCGCCTGCGAGCAGGTGCTAAGCCCGTCTGCGGGCGCCCGCGCCC
GCTCACTCTGCTCTTCTGCCGAGACTGTGACGTCACCTTTGTTGTCTTCG
TCGGCACGCGTCGGTGGCACCCCAGTCGCCCCGCCGCCGAAGGCAAAGGA
GAACTCGCCCGCTTCCGCCACCGGGCCCACCGCCGCCGCCGCCGCCGCCG
GTAGATCTTCGGCCCCTGCAAGCCCGTCGAACAGCGACGCGACCCTGAAG
CCCCTGTCCTTGTCCTTCTCCTCCCTGTTCTTCTTGGTGCTGATCTTGTC
CTGCACCGCAAAGATGTCCGTCAGCGTCGACATGTGGGCGACGAAACGTT
CTTTTTCTCTGGGGGCTCCCGCCTTGGGCCCCGCTGCATCACTCGCCCCG
GGAAGGGGGGCAGTCTCTCCCTCATCAGGAGGCGGGGCCCGCTGCTGTTG
CGCCCGCTCGCACGGCGTGGGCGGAACCACACCCCCTCCACTGCCCCCCT
CCCGTGTCTGTTCGCTGTTAAGATCAGACGCCGGCGGCGCATTCGCATTC
GCGCCGCCGACGACGCTGTCCCGCCCAGCGGCGCCGCTCTCGAGCGCGGA
TACGGGAACAGGCGGAGCACCGGATGCCTCGCCGGCAGGGCGCGCGGGTG
CGGTACCACTGTCGCCGCCGAACAGGCCGGCCAAAACTCCAAGAGATCGC
TGCCGCATGACCAAAACGCGGTAGAAGGCCGTCTCCGCCCCCTGCAGGGC
GCTAGGGGCGGAAGTCGGGGGGGTCGCCCCCGCCTGCGAGCAGGTGCTAA
GCCCGTCTGCGGGCGCCCGCGCCCGCTCACTCTGCTCTTCTGCCGAGACT
GTGACGTCACCTTTGTTGTCTTCGTCGGCACGCGTCGGTGGCACCCCAGT
CGCCCCGCCGCCGAAGGCAAAGGAGAACTCGCCCGCTTCCGCCACCGGGC
CCACCGCCGCCGCCGCCGCCGCCGGTAGATCTTCGGCCCCTGCAAGCCCG
TCGAACAGCGACGCGACCCTGAAGCCCCTGTCCTTGTCCTTCTCCTCCCT
GTTCTTCTTGGTGCTGATCTTGTCCTGCACCGCAAAGATGTCCGTCAGCG
TCGACATGTGGGCGACGAAACGTTCTTTTTCTCTGGGGGCTCCCGCCTTG
GGCCCCGCTGCATCACTCGCCCCGGGAAGGGGGGCAGTCTCTCCCTCATC
AGGAGGCGGGGCCCGCTGCTGTTGCGCCCGCTCGCACGGCGTGGGCGGAA
CCACACCCCCTCCACTGCCCCCCTCCCGTGTCTGTTCGCTGTTAAGATCA
GACGCCGGCGGCGCATTCGCATTCGCGCCGCCGACGACGCTGTCCCGCCC
AGCGGCGCCGCTCTCGAGCGCGGATACGGGAACAGGCGGAGCACCGGATG
CCTCGCCGGCAGGGCGCGCGGGTGCGGTACCACTGTCGCCGCCGAACAGG
CCGGCCAAAACTCCAAGAGATCGCTGCCGCATGACCAAAACGCGGTAG
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