mRNA_L-elsbetiae_contig1701.4695.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1701.4695.1
Unique NamemRNA_L-elsbetiae_contig1701.4695.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1701.4695.1 vs. uniprot
Match: A0A6H5KQZ1_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ1_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 6.300e-28
Identity = 66/88 (75.00%), Postives = 74/88 (84.09%), Query Frame = 1 
Query:   13 SLGPRSLELLATAAANPRLRPLLVESPRFPEVLDLLMLERHLDGASASS---LPVALGALGVVRAAASDRGTALRLVKLGIVSKLAAL 267
            SLGPRSL LLA AAANPRLRP+LV+SP+FP VLDLLM+ RHLDGAS+++   L VALGAL VV AA SD  TA RLVKLG+VSKLAAL
Sbjct:  886 SLGPRSLALLAKAAANPRLRPMLVDSPKFPAVLDLLMVGRHLDGASSNNAIPLEVALGALSVVEAAVSDERTASRLVKLGVVSKLAAL 973
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BLAST of mRNA_L-elsbetiae_contig1701.4695.1 vs. uniprot
Match: D7FT64_ECTSI (E3 ubiquitin-protein ligase Nedd-4, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT64_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 1.250e-15
Identity = 40/51 (78.43%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:   13 SLGPRSLELLATAAANPRLRPLLVESPRFPEVLDLLMLERHLDGASASSLP 165
            SLGPRSL LLA AAANPRLRP+LV+SP+FP VLDLLM+ERHLDGAS+   P
Sbjct:  900 SLGPRSLALLAKAAANPRLRPMLVDSPKFPAVLDLLMVERHLDGASSVEAP 950
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1701.4695.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KQZ1_9PHAE6.300e-2875.00FYVE-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FT64_ECTSI1.250e-1578.43E3 ubiquitin-protein ligase Nedd-4, putative n=1 T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1701contigL-elsbetiae_contig1701:19102..20734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score81.3
Seed ortholog evalue2.7e-13
Seed eggNOG ortholog2880.D7FT64
Hectar predicted targeting categoryother localisation
EggNOG free text desc.lipid binding
EggNOG OGsKOG1729@1,KOG1729@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size283
Cds size282
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815708.507778-CDS-L-elsbetiae_contig1701:19101..192301622815708.507778-CDS-L-elsbetiae_contig1701:19101..19230Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1701 19102..19230 -
1691683051.2824323-CDS-L-elsbetiae_contig1701:19101..192301691683051.2824323-CDS-L-elsbetiae_contig1701:19101..19230Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1701 19102..19230 -
1622815708.5181653-CDS-L-elsbetiae_contig1701:20581..207341622815708.5181653-CDS-L-elsbetiae_contig1701:20581..20734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1701 20582..20734 -
1691683051.2919636-CDS-L-elsbetiae_contig1701:20581..207341691683051.2919636-CDS-L-elsbetiae_contig1701:20581..20734Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1701 20582..20734 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1701.4695.1prot_L-elsbetiae_contig1701.4695.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1701 19102..20734 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1701.4695.1

>prot_L-elsbetiae_contig1701.4695.1 ID=prot_L-elsbetiae_contig1701.4695.1|Name=mRNA_L-elsbetiae_contig1701.4695.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=94bp
MGNDSLGPRSLELLATAAANPRLRPLLVESPRFPEVLDLLMLERHLDGAS
ASSLPVALGALGVVRAAASDRGTALRLVKLGIVSKLAALVRQKP
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mRNA from alignment at L-elsbetiae_contig1701:19102..20734-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1701.4695.1 ID=mRNA_L-elsbetiae_contig1701.4695.1|Name=mRNA_L-elsbetiae_contig1701.4695.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1633bp|location=Sequence derived from alignment at L-elsbetiae_contig1701:19102..20734- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGAACGACTCGCTCGGGCCCCGCTCTCTGGAGCTCCTGGCGACGGC
GGCGGCCAACCCGAGGCTCCGCCCGCTGCTGGTGGAGAGCCCAAGGTTTC
CCGAGGTGCTTGACCTGCTGATGCTGGAAAGACATCTGGACGGCGCATCT
GCGGTGAGTTTTGAGTGGGGCGCCGTCTGTCTACCGTAGGTGACATCAGA
TAAGAAACCCCCTGGACCGATTTTCAAAGCTCAAGTAGTCCACAGCAAAG
CAGAGCGTCAGTCCCGAAAAGGGCGGCGTTGGAAAGAAGATCTCGTCGAG
AGCTGAGCTTTCCGAAAATGTGGCGTTTGTGGTTTAGAATCGTATTCGTT
GCGGAGCAACCAAGCTTTCAATATCGGTCCAGGGGGTGTCTCATCTTATG
TATCTCACCTACGGTACGATGTTTTTTTTTTTTTTTTTTTTTTCCCATTT
TTTGTTTTTTTCTTTTGCCCCTTTTGCCCCCCTCCTCCCCTTCTACTCCA
TCTAGACGACCCAACCGGGGTCACATAGGATATGTTNNNNNNNNNNGGGT
GGGGGACAAGGGGGTGTCTCATCTTATGTATCTCACCTACGGTACGATGT
TTTTTTTTTTTTTTTTTGTCTGCCCATTATTGGATTTTGTCGTCTGCCCC
TCTGGCCCCCATCCTCCACTTCTACTCAAGCTAGACGACCCAACCGGGGT
CACATAGGATATGTTGCGCGCTGGCTTGTGCAGGCGTGCAGCGGCGGGCA
CCATTTATTGTAGGACCGCACCTCCTCCTCAAAAGCAAAATAGGCTTGGA
GGAGAGGTGTGTGTCGCCGTCGTGTTTGGTCAAGTCCGAGACACGGCCTC
TGAGTATTTGGCAGTGTTGGAGATTGGGTATCGAAATATCGAAATATTTC
GAGGATCGATCGATATTTTCGGCAATTCTCAGTATCGAGATTGCGAGTTG
GCAGGCCAATACTTTCGATACGACAAACTGGCTCTTTTTGGGGGCCCGTG
TGCTCAATCAACTGTGAGGGGGGTATTGCATTCACATCATCTGTCTGTCC
CTCCGTTTGTCACGAAAAGTAGGCCCCGAAACGGGTAATTTGACCCAAAA
ATAAAAAATAGCCGCTGAGAATATCGAAACAAGCAGGAGTATCTACCGGT
ATCGAGCTTTTTTGTCGATATTTAAAAAAACCGGATCGAACATTTTTTCG
GGATCAATCTTCAACACTGGTATTTGGTGTGTCTTTTTGGGCCTAATTTA
CTTGCCTTCCCGCGCGCTCGCCTCCGTTCTCGCACTTTATATCTTTTATG
CTCGCATCGTGCTCTCGCCTCTCCGCTCTCGCTTTATTTTATTTCTCGCT
TTTTTTCTTCATCCACACATGGCTTTCCCCTCTTGGCGTGTGTGTGTGTG
TGTGTGTGTGGGTGTGTGGGTGTGTGTTGTGTATGTGTGTGTCCCTGTAT
GTATTGACTGGTCTGCTCGACCCCCGACCACCGACCGCCGACTTTGACCG
TCAGAGCTCTCTACCGGTGGCGCTGGGGGCGCTCGGCGTCGTCCGCGCCG
CCGCCTCCGACCGGGGCACGGCGTTGCGGCTCGTCAAGCTCGGCATCGTT
TCCAAGCTGGCGGCTCTCGTGCGCCAGAAGCCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1701:19102..20734-

>mRNA_L-elsbetiae_contig1701.4695.1 ID=mRNA_L-elsbetiae_contig1701.4695.1|Name=mRNA_L-elsbetiae_contig1701.4695.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=564bp|location=Sequence derived from alignment at L-elsbetiae_contig1701:19102..20734- (Laminarionema elsbetiae ELsaHSoW15)
ATGGGGAACGACTCGCTCGGGCCCCGCTCTCTGGAGCTCCTGGCGACGGC
GGCGGCCAACCCGAGGCTCCGCCCGCTGCTGGTGGAGAGCCCAAGGTTTC
CCGAGGTGCTTGACCTGCTGATGCTGGAAAGACATCTGGACGGCGCATCT
GCGATGGGGAACGACTCGCTCGGGCCCCGCTCTCTGGAGCTCCTGGCGAC
GGCGGCGGCCAACCCGAGGCTCCGCCCGCTGCTGGTGGAGAGCCCAAGGT
TTCCCGAGGTGCTTGACCTGCTGATGCTGGAAAGACATCTGGACGGCGCA
TCTGCGAGCTCTCTACCGGTGGCGCTGGGGGCGCTCGGCGTCGTCCGCGC
CGCCGCCTCCGACCGGGGCACGGCGTTGCGGCTCGTCAAGCTCGGCATCG
TTTCCAAGCTGGCGGCTCTCGTGCGCCAGAAGCCGAGCTCTCTACCGGTG
GCGCTGGGGGCGCTCGGCGTCGTCCGCGCCGCCGCCTCCGACCGGGGCAC
GGCGTTGCGGCTCGTCAAGCTCGGCATCGTTTCCAAGCTGGCGGCTCTCG
TGCGCCAGAAGCCG
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