mRNA_L-elsbetiae_contig1701.4694.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1701.4694.1 vs. uniprot
Match: D7FT64_ECTSI (E3 ubiquitin-protein ligase Nedd-4, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FT64_ECTSI) HSP 1 Score: 734 bits (1895), Expect = 5.980e-229 Identity = 711/1471 (48.33%), Postives = 789/1471 (53.64%), Query Frame = 1
Query: 136 AGRREEVCAALRVLAGLAEHEACVSLVLEKEDLGFLLQVVREATTSPQNSNXXXXXXXXXQVKAEMREEVEDALLCLLPLTARXXXXXXXXXSRSGSASLVNRALGLAATSPAHPGLDALLHLASAEGGTALQVVFQLVAAADAAKSVPSSPVLRPLVDGRHAAVLERLLGPVPFAWQDERGSAKPKHASVVRAARARACDALRRACEEQAFSPASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDVGAIVAGLLPLVLSLAGTTVEGARCLRALFAAEGGVGEAARAAVLLPRDATRLEGXXXXXXXXXXXXXXXXXXXXXXXIRAVVGLLESEQVEIRAAGASILRRLIFDPSPDQXXXXXXXXXXXXXXXYRDTLVATPAPSCRALLASLDACEGRWEAVRSLSSLGLFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGAFD-------------------------------------AAGCV-------EGFDGRESEALSAVCVDALRALATDAFTGPLEKARCLSLLADLAVDPRCARTLFRGGAVPQMLLNAQGCTHAELVDLHGGGSG---------SDGRASPASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHEAVPAEPVASSPAAAGRSSEAVCCRCRQAMRLLARLVRGLPGETPAVLVRHSGLRSIVQILEDGAAEAAALAAVPADGDGCRLPAATEAAVREALELFVALSEQGPHRRALVGTPGLLLSASSYVXXXXXXXXXXXXXXXXXXXXXXXXXXXDSAEASAFRLLGNLAHSDSARRRITKLDGLVLAAARALSASAQELGPSPSPSXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXVGVGEAAAALLGRLTPVLGVEGGEDELVAAGEALSAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGRLSELASEALSGLLVLSWSDSCSLDTAAAVDSFITDAGLADGVVALWRRATTATTAAASADFGTLPASALALMSSISCRPTGRQALVAAGAASAVIAVALRPSDTSVGXXXXXXXXXXXXXXXXXXXXSGGLRLTVAERSEAIRLLCVLCASPAHRVAVRSSLVMATARERRGDGGDGAGGEDEFEAELDEGDVEAAIVRIQGGNGGSMSGLQDCRAGACRLAFLLGVAPPAAAPSRRLPHRSTAAGAGAFAADHLSAP----VPVGGRRGPPQTXXXXXXXXXXXXAYPPHPAIPGAANRTNRGAFSERSGGXXGSSRGWAGEASRMEDDAASVDSQELEEALFPTTAATAGAPAAGSGAPQARPEGSGLPSLPRIPSVISAAATAPAPARSWRPLPPAPAAAPSNARSDSEESLHRLLSMIAKAEGEEDXXXXXXXXXXXXXXXXXXXXXXDSEAGEDKTECKNCGKLVFAPTGFDLALIDCPHCGQSMG 4377
A RREEVCA LRVLAGLA HEACV LVLE EDLG LLQ + E T V+A+MREE+EDAL CLLPL R S +NRALGL ATSPAHPGLDALLHLASAEGG ALQVVFQLVAA DAAKSVPSSPVLRPL DGRH AVL+ LLGP F WQ G S V+AARARACDALR AC E + S +SA DV A VA + PLVL LAGTT+EGARCLRA+FAA GGVGEAA+AAVL G I A+V +L S VEIRAAGASILR+L+F + A CRALL SL AC GR EA+RSLSS GLFG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX A G V EGFD +ESEALS VCV+AL+ALATD FTGPLEKARCLSLLADLA+DPRCARTLF+GGA+PQMLLNAQGCTH +L+D+HG G SDGRASP XXXXXXXXXXXXXXXXXXXXXXXXXX A V+ S AG AVCCRCRQA RLLARLVRGLPGETPAV+VRHSGLRS+VQILEDGAAEA A +G G R+P ATEAAVREALELFVALSEQ PHR AL PGL SASSY+ SAE SAFRLL NLA +D+ RRR+ +LDGLVLA+ARAL XXXXXXXXXXXX XXXXXXXXXXXX AAAALL RL+PVLG +GGE+ELVAAGEALSAAVA LASEAL LLVLSW+DS SLD AAAVD F+TD+ AD VV+LWRR + AS+ FG L +ALA MSSI+ RPTGR++LVAAGAASAV+ VAL G +L+V+ER E IRLLCVLCASPAHR AVRSSL+ E +GG+D GAFAA++LS+ P R PP XXXXXXX +R A A+ +EDD AS S +LEEALFPT ATA A G+P AR +L R ++ A+A APA R AP N RSDSEESLHRLLSMIA + +E +DK C++CGKLVFAPTGFDLALI+CPHC + MG
Sbjct: 949 APRREEVCAGLRVLAGLAAHEACVPLVLESEDLGCLLQGIPEGMTPTPAVGRETPGGHGPPVRAQMREEMEDALRCLLPLKGRPQ-----------QRSSLNRALGLVATSPAHPGLDALLHLASAEGGPALQVVFQLVAA-DAAKSVPSSPVLRPLGDGRHPAVLKGLLGPADFPWQG--GIGPSARDSAVKAARARACDALRHACSELSPSSSSAPAAARDTGNPTGDGGDSAEAGPGGNVTAGSGKL----DVEA-VAEVFPLVLPLAGTTLEGARCLRAMFAARGGVGEAAQAAVLRRGVVGDAAGAGAGG------------------IGAIVAMLHSTYVEIRAAGASILRKLVFPTAAPTHRPEGGGQA-----------AAASIRPCRALLESLHACGGRSEALRSLSSFGLFGEQDQAAVPGGTLSVIDNGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAAEGLVGWNGGGEEGFDAQESEALSGVCVEALQALATDNFTGPLEKARCLSLLADLALDPRCARTLFQGGAIPQMLLNAQGCTHVDLIDVHGDRGGXXXXXXXXXSDGRASPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQRV--------AVGVSGSVTTAG----AVCCRCRQATRLLARLVRGLPGETPAVVVRHSGLRSVVQILEDGAAEAKAAT----EGTGGRIPTATEAAVREALELFVALSEQKPHRGALADLPGLARSASSYIVSATTASTSSSSPQAGED---------SSAEESAFRLLANLAFADAPRRRVLELDGLVLASARALX---------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAALLCRLSPVLGADGGEEELVAAGEALSAAVAAVSMAAAGRDFTA-----------------------ATAGGLASEALYALLVLSWADSSSLDAAAAVDGFVTDSRFADSVVSLWRRGMAPS---ASSGFGALSETALATMSSIAARPTGRKSLVAAGAASAVVDVAL-------GRQGGGGDVAGDSEGGCSQTMMMAPQLSVSERGEIIRLLCVLCASPAHRGAVRSSLMAKRGVE--------SGGDDTX--------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAFAAEYLSSGDHRRTPF---RSPPTGDAVIKXXXXXXXXXXXXXXXXXXYAGDSRAA------------------AAGLEDDIAS--SVDLEEALFPTATATA---VAHLGSPGARD------TLSRAAVAVAPVASARAPAAGRRDHALLTFPAPKNGRSDSEESLHRLLSMIANEDNSS------AAAASATANGSLSGAVVGAEERDDKIACESCGKLVFAPTGFDLALIECPHCQKPMG 2238
BLAST of mRNA_L-elsbetiae_contig1701.4694.1 vs. uniprot
Match: A0A6H5KQZ1_9PHAE (FYVE-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQZ1_9PHAE) HSP 1 Score: 570 bits (1470), Expect = 1.310e-169 Identity = 625/1427 (43.80%), Postives = 699/1427 (48.98%), Query Frame = 1
Query: 130 ELAGRREEVCAALRVLAGLAEHEACVSLVLEKEDLGFLLQVVREATTSPQNSNXXXXXXXXXQVKAEMREEVEDALLCLLPLTARXXXXXXXXXSRSGSASLVNRALGLAATSPAHPGLDALLHLASAEGGTALQVVFQLVAAADAAKSVPSSPVLRPLVDGRHAAVLERLLGPVPFAWQDERGSAKPKHASVVRAARARACDALRRACEEQAFSPASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDVGAIVAGLLPLVLSLAGTTVEGARCLRALFAAEGGVGEAARAAVLLPRDATRLEGXXXXXXXXXXXXXXXXXXXXXXXIRAVVGLLESEQVEIRAAGASILRRLIF-DPSPDQXXXXXXXXXXXXXXXYRDTLVATPAPSCRALLASLDACEGRWEAVRSLSSLGLFGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGGAFDAAGCVEGFDGRESEALSAVCVDALRALATDAFTGPLEKARCLSLLADLAVDPRCARTLFRGGAVPQMLLNAQGCTHAE----LVDLHGGGS-GSDGRASPASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRHEAVPAEPVASSPAAAGRSSEAVCCRCRQAMRLLARLVRGLPGETPAVLVRHSGLRSIVQILEDGAAEAAALAAVPADGDGCRLPAATEAAVREALELFVALSEQGPHRRALVGTPGLLLSASSYVXXXXXXXXXXXXXXXXXXXXXXXXXXXDSAEASAFRLLGNLAHSDSARRRITKLDGLVLAAARALSASAQELGPSPSPSXXXXXXXXXXXXXXXXXXXXRXXXXXXXXXXXXVGVGEAAAALLGRLTPVLGVEGGEDELVAAGEALSAAVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGRLSELASEALSGLLVLSWSDSCSLDTAAAVDSFITDAGLADGVVALWRRATTATTAAASADFGTLPASALALMSSISCRPTGRQALVAAGAASAVIAVALRPSDTSVGXXXXXXXXXXXXXXXXXXXXSGGLRLTVAERSEAIRLLCVLCASPAHRVAVRSSLVMATARERRGDGGDGAGGEDEFEAELDEGDVEAAIVRIQGGNGGSMSGLQDCRAGACRLAFLLGVAPPAAAPSRRLPHRSTAAGAGAFAADHLSAPVPVGGRRGPPQTXXXXXXXXXXXXAYPPHPAIPGAANRTNRGAFSERSGGXXGSSRGWAGEASRMEDDAASVDSQELEEALFPTTAATAGAPAAGSGAPQARPEGSGLPSLPRIPSVISAAATAPAPARSWRP-----LPPAPAAAPSNARSDSEESLHRLLSMIAKAEGEEDXXXXXXXXXXXXXXXXXXXXXXDSEAGEDKTECKNCGKLVFAPTGFDLALIDCPHCGQSMG 4377
E+ R+EVCA LRVLAGLA HEACV LVLE EDLG LLQV+REA T + +V+AEMREEVEDAL CLL LTAR S +NRALGL ATSPAHP LDALL+LAS EGG ALQ GP F WQ G A SVV+AARARACDALRRAC E + +S DV A VA + PLV SLA TT+EGARCLRA+FAA GGVGEAA+AAVL R +G I A+V +L S+ VEIRAAGASILR+L+F +P XXXXXXXXXXXXXXX T CRALL SL AC GR EA+RSL S+GLFG XXXXXX G AGC R+ A A LR AT ++L L GGA L + + AE LV L GGG G D + S A S XXXXXXXXX A V S AG AVCCRCRQA RLLARLVRGLPGETPAV+VRHSGLRS+VQILEDGAAEA A A G G R+PAATEAAVREALELFVALSEQ PHR ALV PGL SASSYV SAE SAFRLL NLA +D+ RRR+ +LDGLVLA+ARAL XXXXXXXXXXXXXXXX XXXXXXXXXXXX AAAALL RL+PVLG EGGEDELVAAGEALSAAVA LASEAL LLVLSW+DS SLD AAAVD F+TD+ AD VV+LWRR T + AS+ FG L +AL MSSI+ RPTGRQ+LVAAG ASAV+ VAL +L+V+ER E IRLLCVLCASPAHR AVRSSL+ E +GG+D EA VEAAIVRIQG A FAA++LS+ RR P ++ XXXXXXXX G +EDD AS S +LEEALFPT AATA A G+P AR S P+L R ++ A+A APA R PPAP N RSDSEESLHRLLSMIA + +E +DK C++CG+LVFAPTGFDLALI+CPHC MG
Sbjct: 996 EVEAPRQEVCAGLRVLAGLAAHEACVPLVLESEDLGCLLQVIREAMTPTSAAGREASGGSGHRVRAEMREEVEDALRCLLSLTARPQ-----------QRSSLNRALGLVATSPAHPRLDALLNLASVEGGPALQ-------------------------------------GPADFPWQGGIGPAARD--SVVKAARARACDALRRACSEL-WPSSSPAPVAARDPGVPSGGGGSGGDSAEAGLGGNVTAGGGKLDVEA-VAEVFPLVFSLARTTLEGARCLRAMFAARGGVGEAAQAAVL--RGGVVGDGGGPGAGG----------------ITAIVAMLHSKHVEIRAAGASILRKLVFASAAPTHXXXXXXXXXXXXXXXXXSTR------PCRALLESLHACGGRSEALRSLCSVGLFG---------------------------EQDQAAVPSGTIAVIDNGXXXXXXERAGSRKGNAGCGR----RKGAAQEARWRGQLRDDAT-------------AVLVSLVGAVTGGAGNGSGGAPSWRQLRRRRSSGAEAADGLVGLSGGGEEGFDAQESEALSGVCVEALRALEEXXXXXXXXXIQRV-------------AVGVGGSVTTAG----AVCCRCRQATRLLARLVRGLPGETPAVVVRHSGLRSVVQILEDGAAEAKAAAG----GTGRRIPAATEAAVREALELFVALSEQQPHRGALVDLPGLARSASSYVVSATTASPASSSPRAGED---------SSAEESAFRLLANLAFADAPRRRVLELDGLVLASARALX-----------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAALLCRLSPVLGAEGGEDELVAAGEALSAAVAAAAEGDVTDAATAVG--------------------------LASEALYALLVLSWADSRSLDVAAAVDGFVTDSRFADSVVSLWRRGTAPS---ASSGFGALSETALVTMSSIAARPTGRQSLVAAGVASAVVDVALGQQGGGDAAGDGEGGCSQTMMLAP--------QLSVSERGEIIRLLCVLCASPAHRGAVRSSLIAKRGLE--------SGGDDTEEAA-----VEAAIVRIQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXA-----FAAEYLSS---GDHRRAPFRSPPTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXG--------------LEDDIAS--SVDLEEALFPTVAATA---VAHLGSPGARGV-SATPALSRAAVAVAPVASARAPAAGRRDHARLTFPPAP----KNGRSDSEESLHRLLSMIASEDNSS------AAVAVATANGSLRGAVVGAEERDDKIACESCGELVFAPTGFDLALIECPHCQMPMG 2167 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1701.4694.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1701.4694.1 >prot_L-elsbetiae_contig1701.4694.1 ID=prot_L-elsbetiae_contig1701.4694.1|Name=mRNA_L-elsbetiae_contig1701.4694.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1460bp GTGTGAFSSAGGGGPGAELKPPPGETVAGAPAAAAAAAAPLRRELAGRREback to top mRNA from alignment at L-elsbetiae_contig1701:8642..19053- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1701.4694.1 ID=mRNA_L-elsbetiae_contig1701.4694.1|Name=mRNA_L-elsbetiae_contig1701.4694.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=10412bp|location=Sequence derived from alignment at L-elsbetiae_contig1701:8642..19053- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1701:8642..19053- >mRNA_L-elsbetiae_contig1701.4694.1 ID=mRNA_L-elsbetiae_contig1701.4694.1|Name=mRNA_L-elsbetiae_contig1701.4694.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=8760bp|location=Sequence derived from alignment at L-elsbetiae_contig1701:8642..19053- (Laminarionema elsbetiae ELsaHSoW15)back to top |