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Homology
BLAST of mRNA_L-elsbetiae_contig170.4687.1 vs. uniprot
Match: A0A6H5JSX4_9PHAE (G domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSX4_9PHAE) HSP 1 Score: 463 bits (1191), Expect = 9.560e-160 Identity = 237/339 (69.91%), Postives = 277/339 (81.71%), Query Frame = 1
Query: 295 EGEGVQISPTEVGYFKGTDTSPPRRHRRQEAPKVATVVGLPGAGKSNLANKILNHPTWDAFEESDGMFGATVETQRAQWDDMVVIDTPGIPSHDPQTTVVNFDAIVDVLRREGSLSTLIFLIQQEEVSPVEFRDYAILLRQLNQLPCSKLIVCRQVAQSRRYKRTEEERRRAGATFVEQVLEDTGLSMPFLLLNDGYGSESFRQIDEIRGFVRRSERAPVEL-ASLRKSTELRLFWQRLADPACRLVALEEELEELELSLWHRSLWLACQVVPLAYISVSSPGAGCLWTGPYVKREQEAFSELRTELRNKKEEVELKKADKEELRAAKGISAYLDYMCS 1308
EGEG + +V + S RR RQEAPKV V+G+P AGKSNLANK+LNHPTWDAFEE DG +G+T ETQR +W D+VVIDTPG P HDP+TT NFDA+V LRREGSLSTLIFL+QQEEVSP EFRDYA+LLRQLN LPCSKLIVCRQ A SRR+KRTEEERR +GA FVE VL+D+GL+MP +LLNDGYGSES +Q+DEIR FV RSERA ++L ASLR ELR F +LADPA RL + EE+E++E SLWHRSLW+ACQVVPLAYISVSSPGAGC+WTGPYVKREQEA + LR EL +KKEE+EL D++ELRAA+G+ A+LDYMC+
Sbjct: 4 EGEGFLSARLDVEHQSAGAGSNGRR--RQEAPKVVMVIGMPRAGKSNLANKLLNHPTWDAFEEGDGTYGSTTETQRVEWADLVVIDTPGFPGHDPKTTSKNFDALVKALRREGSLSTLIFLVQQEEVSPTEFRDYAVLLRQLNHLPCSKLIVCRQAALSRRHKRTEEERRHSGAQFVEGVLDDSGLNMPLVLLNDGYGSESIKQVDEIRRFVGRSERARLDLVASLRTFAELRSFAAKLADPASRLRTVREEVEQMEASLWHRSLWMACQVVPLAYISVSSPGAGCIWTGPYVKREQEACARLRKELNDKKEEIELDIVDEQELRAAQGVLAFLDYMCA 340
BLAST of mRNA_L-elsbetiae_contig170.4687.1 vs. uniprot
Match: D8LN49_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN49_ECTSI) HSP 1 Score: 232 bits (592), Expect = 2.520e-71 Identity = 119/171 (69.59%), Postives = 142/171 (83.04%), Query Frame = 1
Query: 799 RRRAGATFVEQVLEDTGLSMPFLLLNDGYGSESFRQIDEIRGFVRRSERAPVE-LASLRKSTELRLFWQRLADPACRLVALEEELEELELSLWHRSLWLACQVVPLAYISVSSPGAGCLWTGPYVKREQEAFSELRTELRNKKEEVELKKADKEELRAAKGISAYLDYMCS 1308
+R AGA FVE VLED+GL+MP +LLNDGYGSESF+Q+DEIR FV RSERA ++ LAS R ELR F +LADPA RL L EE+E++E SLWHRSLW+AC VVPLAYISVSSPGAGC+WTGPYVKREQEA + LR EL +KKEE+EL D++EL AA+G+SA+LDYMC+
Sbjct: 26 KRHAGAQFVEGVLEDSGLNMPLVLLNDGYGSESFKQVDEIRRFVGRSERARLDPLASPRTFAELRSFAAKLADPASRLRTLREEVEQMEASLWHRSLWMACHVVPLAYISVSSPGAGCIWTGPYVKREQEACARLRKELNDKKEEIELDIVDEQELCAAQGVSAFLDYMCA 196
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | expressed unknown protein |
Ec32 ortholog | Ec-05_003480.1 |
Exons | 5 |
Model size | 1311 |
Cds size | 1035 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815707.7345762-CDS-L-elsbetiae_contig170:38463..38568 | 1622815707.7345762-CDS-L-elsbetiae_contig170:38463..38568 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig170 38464..38568 - |
1691683050.7736244-CDS-L-elsbetiae_contig170:38463..38568 | 1691683050.7736244-CDS-L-elsbetiae_contig170:38463..38568 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig170 38464..38568 - |
1622815707.7456622-CDS-L-elsbetiae_contig170:38937..39039 | 1622815707.7456622-CDS-L-elsbetiae_contig170:38937..39039 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig170 38938..39039 - |
1691683050.7920296-CDS-L-elsbetiae_contig170:38937..39039 | 1691683050.7920296-CDS-L-elsbetiae_contig170:38937..39039 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig170 38938..39039 - |
1622815707.755531-CDS-L-elsbetiae_contig170:39210..39511 | 1622815707.755531-CDS-L-elsbetiae_contig170:39210..39511 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig170 39211..39511 - |
1691683050.802719-CDS-L-elsbetiae_contig170:39210..39511 | 1691683050.802719-CDS-L-elsbetiae_contig170:39210..39511 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig170 39211..39511 - |
1622815707.7647676-CDS-L-elsbetiae_contig170:40091..40599 | 1622815707.7647676-CDS-L-elsbetiae_contig170:40091..40599 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig170 40092..40599 - |
1691683050.8115318-CDS-L-elsbetiae_contig170:40091..40599 | 1691683050.8115318-CDS-L-elsbetiae_contig170:40091..40599 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig170 40092..40599 - |
1622815707.7740307-CDS-L-elsbetiae_contig170:42234..42253 | 1622815707.7740307-CDS-L-elsbetiae_contig170:42234..42253 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig170 42235..42253 - |
1691683050.821292-CDS-L-elsbetiae_contig170:42234..42253 | 1691683050.821292-CDS-L-elsbetiae_contig170:42234..42253 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig170 42235..42253 - |
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815707.7833664-UTR-L-elsbetiae_contig170:42253..42529 | 1622815707.7833664-UTR-L-elsbetiae_contig170:42253..42529 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig170 42254..42529 - |
1691683050.8320513-UTR-L-elsbetiae_contig170:42253..42529 | 1691683050.8320513-UTR-L-elsbetiae_contig170:42253..42529 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig170 42254..42529 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig170.4687.1 >prot_L-elsbetiae_contig170.4687.1 ID=prot_L-elsbetiae_contig170.4687.1|Name=mRNA_L-elsbetiae_contig170.4687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=345bp
MSNEEQEGEGVQISPTEVGYFKGTDTSPPRRHRRQEAPKVATVVGLPGAG KSNLANKILNHPTWDAFEESDGMFGATVETQRAQWDDMVVIDTPGIPSHD PQTTVVNFDAIVDVLRREGSLSTLIFLIQQEEVSPVEFRDYAILLRQLNQ LPCSKLIVCRQVAQSRRYKRTEEERRRAGATFVEQVLEDTGLSMPFLLLN DGYGSESFRQIDEIRGFVRRSERAPVELASLRKSTELRLFWQRLADPACR LVALEEELEELELSLWHRSLWLACQVVPLAYISVSSPGAGCLWTGPYVKR EQEAFSELRTELRNKKEEVELKKADKEELRAAKGISAYLDYMCS* back to topmRNA from alignment at L-elsbetiae_contig170:38464..42529- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig170.4687.1 ID=mRNA_L-elsbetiae_contig170.4687.1|Name=mRNA_L-elsbetiae_contig170.4687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4066bp|location=Sequence derived from alignment at L-elsbetiae_contig170:38464..42529- (Laminarionema elsbetiae ELsaHSoW15) GGCGCGAGCGCTCCTATTTTAATGCGGATAAGCATGCTAGTCTAGAGAAC
TAGTGATCCTCGAGATTACTGCTGGGTAAGCGTGTCCCAACGGAACCAAA
CAGCAAGTTGATAATGTGCGTTTCTCGTTTTTTGGAGATCTCCAACGAAC
GGACGTCATCCTGCGCACGCCCACGGTACGCAACCCTCCAAAACCAGAAC
CACAACACAGCTGGCCCCGAGTTTGACTGCACGTCCAGCACGACAGGAGC
TCTTCGCCTTCTTTTTCACAGTGAAGATGTCAAACGAAGAACAAGGTAGG
TGAATTTTCAGCCAAGATGGCGTGCCTTGGTTACGTGCTTCGTCGTGTGT
CTATGTGTGTAGACAGACTAGATAGTCTAGATGTCTGCAACAGTAACCGC
TTCTACACACAATGCAGAGTAGTCCATTGTGCCTACCTGGCATTCAACAG
GAGAGACGGGGGTGGGGGGAGCTAGTGGGCAGTAGCTCCACACAGTCGAC
GTGTACGCGGGAAAAGCTTTGAAGCATGAAGAAACTTCGCCTACCAACGG
CGGCGAGTACCTTTCCAGCGAGGTCGCCTCTCTCCGACTCTTTTCGGTAG
GGAGATGTGATGCACGCCAGACCTCCCACATGTAAGCAAGCTAGCAGTTC
AACGAAAGCCAACATTTGCGCAAGAGTGAGGAGTGCAGAGAGACTAATTT
GGCAACTATAAATACTGTACCCGCTGTGACAGGGGCGCAGATATTAAAAA
ATCTCCGTCCGCGCAGAGGCCGCCTGTTGGCACACACACACCCGCCCACG
GTATCGAGAGGGGGGAGGAACAAAAGGAACGACAGCAGGCATTTATGAAT
CTTTCGTCGCACGCCGTCCTGTTGGCTTGCATATACAAAACCGTTTGGAC
GTCATCAACCTGCAACTCTGTAGGTTTGAGATAGATTGATAAATACATAA
ATACTGCGTTGGGTTGCATACCTCCCCGCCGCATGTGTCTGCAAAAGATG
TGTGACTCTTCGTCTCCTCTTATTTATCTAGAACAAGATAAGTTTGTATG
ACTGGCTGTACCGCCGTGTGTGTGGGCGTATGTCGAGCAGCACGGAAACG
TGTTCTTGTCTAGTCTTTTCATACTGCACCCTCGATATCTGCCCTAGAAT
ACACATTTCCAATTGTTCGATCTACTCCCTTGACTCCCTCCCCCAAACCA
GAAAAACAAATAAAAACAAATAAATTCATCCAGCCCAACTTCTTGCCATC
GTCCCCTTCACGTCTTTGTTGTGCACTAGATAATGCTTCGAAGCTCGGCA
CTGAACGTTCTCGACATATCATGTGTCCACTCCACCAAAAACAATGCATC
TCGAAACATCAAAAACAAGGTTTTGACGCCCTCGCAACCCAACAGAGTCG
ATGTTTCTCGGCGCGTTCGCCGGGATGGGCCGCGAGGCCTGCACCAGGAC
GAACAGCCAAAGGTTAAGACAGACCGACAGCTGCACGAGAACACACCAGT
GCATCTATATAAGTTAGCGAAGCGAAACGCTTGTCGCACGAATGGTGAAG
CTCAACGATCGTCGTCTCTTGTGATCCTCGTCCAGATAATGGGAGGGACT
AAGCTGTTACGTGTTCTACCGTATGGCACCACAGTAAGAGTTAAAACGAG
CAGAGAAATATCACTCGGTCAGGGTCTGGACATTTTTCGCGTCTGATCTA
CGTACGTACAAAGATATTTGTTGAACGCGGCTCGTCCTTGAGTCGGTTCT
ATCGTTGGAAATATGGCCAGATTCGCCAAAAGATCTTGGATGAAGATTGG
GGGGATGTATCATGACACCATCGGGGGAGAGGCGCACGGATTTCTGAAGA
CAATAGCTCGCGGCTGGATGTGTTGTGGTATGGAATCTAGTCTACAAATT
TTCACCCCGCCTCACTTTTCCGTCCACCAGAAGGAGAAGGAGTCCAGATT
TCACCGACTGAAGTGGGCTATTTCAAGGGCACCGATACTTCCCCTCCTCG
CCGTCATCGCCGACAAGAAGCGCCTAAGGTGGCTACTGTGGTGGGTTTGC
CTGGGGCAGGCAAGTCTAACCTGGCCAACAAGATTCTGAATCACCCAACT
TGGGATGCTTTCGAAGAATCAGACGGGATGTTCGGTGCCACGGTTGAGAC
GCAAAGAGCCCAGTGGGATGATATGGTGGTGATCGATACACCTGGAATTC
CCAGCCACGACCCGCAGACAACAGTTGTAAACTTTGACGCTATCGTTGAT
GTGCTGCGGAGGGAAGGGAGTCTTAGCACTCTTATATTTTTGATCCAGCA
GGAGGAAGTGAGCCCGGTCGAGTTCCGTGACTATGCGATCCTGCTGAGGC
AGCTGAATCAGTTGCCTTGCTCGAAGCTGATCGTGTGTCGGCAGGTAGCT
CAAAGCAGGCGCTACAAAAGGACGGAGGAGGAAAGAAGGTGAAGTTTTTT
AAGTTGTTGAACGTTCCTTGCCTAGACTATAACTTGGAATTTTCATCAAG
GATTAAAACCATTACAATCATACCGTACAGTCATTTTCCCCGGTACAGGC
AATTAAAAAAAGATCTTTCAGAATTCCGCTGTTTATGGTGGTGTTGGCTT
CGACTAGTCTTTTTCCATATTTTTATAGTGAACGTGATGTAATCAGCGAA
AGTTTCAACAGCGCTGGCGAAACGCTTTCTCTGAGAGGGGCTGCGTGTGA
TGTTGATCGTACAGTATCAGCTTTCTTGCTCGACGTCCAATCCCACCTCT
CGGCTAGACCAACATTCAGATTTGATTTGCGTACAGGTCACCTGTCACAG
CTGCCGAACGAAGCCTGTGCCCCCTGTCACGAAATTGGGGCAACAGGCAC
CATATACATATATGATGCCTTCTACCCTGTCCGCCCAATGAACCCGTGAA
CAATCATCCCGAAACCCCTCTGAACAACCATGAAGCTCAGTGAATCCTCC
CTTACTGCTGCGGCCCCTACTCAATCCCTGATCGTCTCCCTATCCTGGCA
ATTATCCAAAACATGAAGGCGTGCGGGAGCAACGTTCGTAGAGCAGGTGC
TGGAGGACACCGGTCTAAGCATGCCGTTTTTGCTGTTGAACGACGGATAT
GGGAGCGAGTCTTTCAGGCAGATCGATGAGATCCGTGGGTTCGTCAGACG
ATCCGAACGCGCCCCGGTGGAACTCGCCTCGCTTCGCAAGTCTACCGAGC
TGAGATTATTCTGGCAACGGTTGGCGGACCCGGCTTGCCGCCTGGTCGCC
TTGGAAGAAGAGCTCGAAGAGTTAGAGTTATCGTTGTGGCACCGCAGCTT
GTGGCTGGCGTGCCAAGTGGTAGGTGGAAAAAACGCATGCCCTCGCAATA
TATATTAGTGTAGTTTAGGTACTTTGTCGATCGCAAGGACCATGCATCAT
GACGAAAGTGACCGATAGACTGCACAAAGAGTCTTCGAGCACCTTTACCA
GCCCCTCAAACTGCTGTCAAAATATGTCTTTCTTGAACAGGTGCCTTTGG
CTTATATTTCAGTTTCCTCGCCAGGAGCGGGGTGCCTCTGGACCGGACCA
TACGTGAAACGGGAGCAGGAGGCCTTTAGCGAGCTTCGAACGGTACAAAA
CGTCGCACGGCATAGCCCTCGTTGGTATATATGTGTTTCGGCCCCGATGA
AGTGGCATTAGTTCGTGTGTGTGTGTTTCGATTAGGTCCTGCCAGCCAAT
ACTGAAGCAGCGTTCTGGGCCCGCTCTTTTCCCATATTATCGTGGTTTTG
TGTGTTTCGCTCCACTACAATCAATAGATACGTTTTTTTGCTTAGGCCCA
GAGCCCTTAATACCCTAGCCAGTCTCTGTGCCATAAGCGGGCTTCGAGTC
GGGGTCAAGCTTATTCGCATACTGGTAAATAGTGTGCGCCGCATAGCCAA
TATACGACATGCCCTTACGCGTCCACACGTTGCTTTTTGGAATCAATTTA
CTGTTCTTCAGGAGCTGAGGAACAAGAAAGAGGAAGTCGAGCTAAAAAAG
GCAGACAAGGAAGAACTTCGTGCTGCGAAGGGAATCTCGGCCTACCTCGA
CTACATGTGCTCGTAG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig170:38464..42529- >mRNA_L-elsbetiae_contig170.4687.1 ID=mRNA_L-elsbetiae_contig170.4687.1|Name=mRNA_L-elsbetiae_contig170.4687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2070bp|location=Sequence derived from alignment at L-elsbetiae_contig170:38464..42529- (Laminarionema elsbetiae ELsaHSoW15) ATGTCAAACGAAGAACAAGATGTCAAACGAAGAACAAGAAGGAGAAGGAG TCCAGATTTCACCGACTGAAGTGGGCTATTTCAAGGGCACCGATACTTCC CCTCCTCGCCGTCATCGCCGACAAGAAGCGCCTAAGGTGGCTACTGTGGT GGGTTTGCCTGGGGCAGGCAAGTCTAACCTGGCCAACAAGATTCTGAATC ACCCAACTTGGGATGCTTTCGAAGAATCAGACGGGATGTTCGGTGCCACG GTTGAGACGCAAAGAGCCCAGTGGGATGATATGGTGGTGATCGATACACC TGGAATTCCCAGCCACGACCCGCAGACAACAGTTGTAAACTTTGACGCTA TCGTTGATGTGCTGCGGAGGGAAGGGAGTCTTAGCACTCTTATATTTTTG ATCCAGCAGGAGGAAGTGAGCCCGGTCGAGTTCCGTGACTATGCGATCCT GCTGAGGCAGCTGAATCAGTTGCCTTGCTCGAAGCTGATCGTGTGTCGGC AGGTAGCTCAAAGCAGGCGCTACAAAAGGACGGAGGAGGAAAGAAGAAGG AGAAGGAGTCCAGATTTCACCGACTGAAGTGGGCTATTTCAAGGGCACCG ATACTTCCCCTCCTCGCCGTCATCGCCGACAAGAAGCGCCTAAGGTGGCT ACTGTGGTGGGTTTGCCTGGGGCAGGCAAGTCTAACCTGGCCAACAAGAT TCTGAATCACCCAACTTGGGATGCTTTCGAAGAATCAGACGGGATGTTCG GTGCCACGGTTGAGACGCAAAGAGCCCAGTGGGATGATATGGTGGTGATC GATACACCTGGAATTCCCAGCCACGACCCGCAGACAACAGTTGTAAACTT TGACGCTATCGTTGATGTGCTGCGGAGGGAAGGGAGTCTTAGCACTCTTA TATTTTTGATCCAGCAGGAGGAAGTGAGCCCGGTCGAGTTCCGTGACTAT GCGATCCTGCTGAGGCAGCTGAATCAGTTGCCTTGCTCGAAGCTGATCGT GTGTCGGCAGGTAGCTCAAAGCAGGCGCTACAAAAGGACGGAGGAGGAAA GAAGGCGTGCGGGAGCAACGTTCGTAGAGCAGGTGCTGGAGGACACCGGT CTAAGCATGCCGTTTTTGCTGTTGAACGACGGATATGGGAGCGAGTCTTT CAGGCAGATCGATGAGATCCGTGGGTTCGTCAGACGATCCGAACGCGCCC CGGTGGAACTCGCCTCGCTTCGCAAGTCTACCGAGCTGAGATTATTCTGG CAACGGTTGGCGGACCCGGCTTGCCGCCTGGTCGCCTTGGAAGAAGAGCT CGAAGAGTTAGAGTTATCGTTGTGGCACCGCAGCTTGTGGCTGGCGTGCC AAGTGGCGTGCGGGAGCAACGTTCGTAGAGCAGGTGCTGGAGGACACCGG TCTAAGCATGCCGTTTTTGCTGTTGAACGACGGATATGGGAGCGAGTCTT TCAGGCAGATCGATGAGATCCGTGGGTTCGTCAGACGATCCGAACGCGCC CCGGTGGAACTCGCCTCGCTTCGCAAGTCTACCGAGCTGAGATTATTCTG GCAACGGTTGGCGGACCCGGCTTGCCGCCTGGTCGCCTTGGAAGAAGAGC TCGAAGAGTTAGAGTTATCGTTGTGGCACCGCAGCTTGTGGCTGGCGTGC CAAGTGGTGCCTTTGGCTTATATTTCAGTTTCCTCGCCAGGAGCGGGGTG CCTCTGGACCGGACCATACGTGAAACGGGAGCAGGAGGCCTTTAGCGAGC TTCGAACGGTGCCTTTGGCTTATATTTCAGTTTCCTCGCCAGGAGCGGGG TGCCTCTGGACCGGACCATACGTGAAACGGGAGCAGGAGGCCTTTAGCGA GCTTCGAACGGAGCTGAGGAACAAGAAAGAGGAAGTCGAGCTAAAAAAGG CAGACAAGGAAGAACTTCGTGCTGCGAAGGGAATCTCGGCCTACCTCGAC TACATGTGCTCGTAGGAGCTGAGGAACAAGAAAGAGGAAGTCGAGCTAAA AAAGGCAGACAAGGAAGAACTTCGTGCTGCGAAGGGAATCTCGGCCTACC TCGACTACATGTGCTCGTAG back to top
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