prot_L-elsbetiae_contig16989.4676.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig16989.4676.1
Unique Name	prot_L-elsbetiae_contig16989.4676.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	257

Homology

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BLAST of mRNA_L-elsbetiae_contig16989.4676.1 vs. uniprot
Match: A0A6H5JAQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAQ4_9PHAE)

HSP 1 Score: 295 bits (754), Expect = 1.960e-96
Identity = 155/259 (59.85%), Postives = 189/259 (72.97%), Query Frame = 0

Query:    1 MSCLRDEDYSEDSCSTCCAIEADAECSNLESEWEFYASTLFFICLCCCFTALCGFTEIRRKKKGISFAQAWSVPQAMPILQTWPRRSVSASDVNQVDGE-GQQWASLADGEDDAKRYPIAGLVDDSGMAFGFVSSLPQSILTSVATSLGQSGSPPPPSPQEPELTVWIARENVGALGT------------------VEASRPQQDSGXXXXXXXXXXXXXXXXXXXXXQRAVVIGNDLEEPLVVEGVR--PSRGVSVLG 238
            MSCLR+ DYS+ SC TCC+IE + +C+ ++SEW+FYASTLFFICLCCCFTALCG TE+RRKKKGISFAQAWSVPQAMPIL+TWPRRS S+SD++Q  GE G QWA+L+D E+D KRYP+AGLVDDSGMAFGFV++LPQ++L+SVATSL Q+GSP PPSPQEPELTVWI+R+N GA  +                  VEA+  ++ S                      QRAVV+GNDLEEPL+++GV   P RG    G
Sbjct:   64 MSCLRNADYSDVSCDTCCSIE-NLDCTKVDSEWDFYASTLFFICLCCCFTALCGLTEVRRKKKGISFAQAWSVPQAMPILRTWPRRSASSSDMSQAGGEVGTQWAALSDDEEDLKRYPVAGLVDDSGMAFGFVTTLPQTLLSSVATSLRQAGSPSPPSPQEPELTVWISRDNEGASASAPAHRGIGGGSGASAVTGVEANSSEESS--------RGSSGATRAAGGRQQRAVVVGNDLEEPLMLDGVGTGPGRGGGAAG 313

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig16989.4676.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig16989.4676.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A6H5JAQ4_9PHAE	1.960e-96	59.85	Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 1..34
None	No IPR available	PHOBIUS	CYTOPLASMIC_DOMAIN	Cytoplasmic domain	coord: 56..256
None	No IPR available	PHOBIUS	TRANSMEMBRANE	Transmembrane region	coord: 35..55
None	No IPR available	TMHMM	TMhelix		coord: 33..55

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig16989	contig	L-elsbetiae_contig16989:1613..2943 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig16989.4676.1	mRNA_L-elsbetiae_contig16989.4676.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig16989 1613..3278 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig16989.4676.1 ID=prot_L-elsbetiae_contig16989.4676.1|Name=mRNA_L-elsbetiae_contig16989.4676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=257bp
MSCLRDEDYSEDSCSTCCAIEADAECSNLESEWEFYASTLFFICLCCCFT
ALCGFTEIRRKKKGISFAQAWSVPQAMPILQTWPRRSVSASDVNQVDGEG
QQWASLADGEDDAKRYPIAGLVDDSGMAFGFVSSLPQSILTSVATSLGQS
GSPPPPSPQEPELTVWIARENVGALGTVEASRPQQDSGGGGLSGSSRSSS
GASRTGGRRQRAVVIGNDLEEPLVVEGVRPSRGVSVLGRSRSRSSSLRRA
DGQIAR*