mRNA_L-elsbetiae_contig16989.4676.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16989.4676.1
Unique NamemRNA_L-elsbetiae_contig16989.4676.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16989.4676.1 vs. uniprot
Match: A0A6H5JAQ4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAQ4_9PHAE)

HSP 1 Score: 332 bits (850), Expect = 3.260e-109
Identity = 170/281 (60.50%), Postives = 208/281 (74.02%), Query Frame = 3 
Query:  270 SGHLASPGKLYTCVDTSDLFGCMSCLRDEDYSEDSCSTCCAIEADAECSNLESEWEFYASTLFFICLCCCFTALCGFTEIRRKKKGISFAQAWSVPQAMPILQTWPRRSVSASDVNQVDGE-GQQWASLADGEDDAKRYPIAGLVDDSGMAFGFVSSLPQSILTSVATSLGQSGSPPPPSPQEPELTVWIARENVGALGT------------------VEASRPQQDSGXXXXXXXXXXXXXXXXXXXXXQRAVVIGNDLEEPLVVEGVR--PSRGVSVLG 1049
            +GHLASPGKLYTC+D S++  CMSCLR+ DYS+ SC TCC+IE + +C+ ++SEW+FYASTLFFICLCCCFTALCG TE+RRKKKGISFAQAWSVPQAMPIL+TWPRRS S+SD++Q  GE G QWA+L+D E+D KRYP+AGLVDDSGMAFGFV++LPQ++L+SVATSL Q+GSP PPSPQEPELTVWI+R+N GA  +                  VEA+  ++ S                      QRAVV+GNDLEEPL+++GV   P RG    G
Sbjct:   42 TGHLASPGKLYTCIDVSEVSSCMSCLRNADYSDVSCDTCCSIE-NLDCTKVDSEWDFYASTLFFICLCCCFTALCGLTEVRRKKKGISFAQAWSVPQAMPILRTWPRRSASSSDMSQAGGEVGTQWAALSDDEEDLKRYPVAGLVDDSGMAFGFVTTLPQTLLSSVATSLRQAGSPSPPSPQEPELTVWISRDNEGASASAPAHRGIGGGSGASAVTGVEANSSEESS--------RGSSGATRAAGGRQQRAVVVGNDLEEPLMLDGVGTGPGRGGGAAG 313
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BLAST of mRNA_L-elsbetiae_contig16989.4676.1 vs. uniprot
Match: A0A6H5L5L4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5L4_9PHAE)

HSP 1 Score: 60.1 bits (144), Expect = 2.410e-6
Identity = 36/98 (36.73%), Postives = 53/98 (54.08%), Query Frame = 3 
Query:  291 GKLYTC--VDTSDLFGCMSCLRDEDYSEDSCSTCCAIEADAECSNLESEWEFYASTLFFICLCCCFTALCGFTEIRRKKKGISFAQAWSVPQAMPILQ 578
            G+ Y C  V++     C+SC+     S   C+ CC    +AEC +LE  W    +TL    +    + +    E RRK+KGIS A+AWS+PQ MP+L+
Sbjct:   86 GERYYCMHVESPQTRACVSCIPSRS-SSTKCAYCCGTP-NAEC-DLEWSWGAVLATLSVSAVFATCSGILALAEKRRKRKGISLARAWSIPQGMPVLR 180
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BLAST of mRNA_L-elsbetiae_contig16989.4676.1 vs. uniprot
Match: D7FJE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJE0_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 9.110e-6
Identity = 33/90 (36.67%), Postives = 49/90 (54.44%), Query Frame = 3 
Query:  309 VDTSDLFGCMSCLRDEDYSEDSCSTCCAIEADAECSNLESEWEFYASTLFFICLCCCFTALCGFTEIRRKKKGISFAQAWSVPQAMPILQ 578
            V++     C+SC+     S   C+ CC    +AEC +LE  W    +TL    +    + +    E RRK+KGIS A+AWS+PQ MP+L+
Sbjct:    3 VESPQTRACVSCIPSRS-SSTKCAYCCGTP-NAEC-DLEWSWGAVLATLSVSAVFATCSGILALAEKRRKRKGISLARAWSIPQGMPVLR 89
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16989.4676.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JAQ4_9PHAE3.260e-10960.50Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5L5L4_9PHAE2.410e-636.73Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJE0_ECTSI9.110e-636.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16989contigL-elsbetiae_contig16989:1613..3278 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons2
Model size1106
Cds size771
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16989.4676.1prot_L-elsbetiae_contig16989.4676.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16989 1613..2943 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.8855367-CDS-L-elsbetiae_contig16989:1612..23541622815705.8855367-CDS-L-elsbetiae_contig16989:1612..2354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16989 1613..2354 -
1691683049.4779668-CDS-L-elsbetiae_contig16989:1612..23541691683049.4779668-CDS-L-elsbetiae_contig16989:1612..2354Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16989 1613..2354 -
1622815705.9032502-CDS-L-elsbetiae_contig16989:2914..29431622815705.9032502-CDS-L-elsbetiae_contig16989:2914..2943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16989 2915..2943 -
1691683049.4889736-CDS-L-elsbetiae_contig16989:2914..29431691683049.4889736-CDS-L-elsbetiae_contig16989:2914..2943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16989 2915..2943 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.9147995-UTR-L-elsbetiae_contig16989:2943..32781622815705.9147995-UTR-L-elsbetiae_contig16989:2943..3278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16989 2944..3278 -
1691683049.501496-UTR-L-elsbetiae_contig16989:2943..32781691683049.501496-UTR-L-elsbetiae_contig16989:2943..3278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16989 2944..3278 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16989.4676.1

>prot_L-elsbetiae_contig16989.4676.1 ID=prot_L-elsbetiae_contig16989.4676.1|Name=mRNA_L-elsbetiae_contig16989.4676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=257bp
MSCLRDEDYSEDSCSTCCAIEADAECSNLESEWEFYASTLFFICLCCCFT
ALCGFTEIRRKKKGISFAQAWSVPQAMPILQTWPRRSVSASDVNQVDGEG
QQWASLADGEDDAKRYPIAGLVDDSGMAFGFVSSLPQSILTSVATSLGQS
GSPPPPSPQEPELTVWIARENVGALGTVEASRPQQDSGGGGLSGSSRSSS
GASRTGGRRQRAVVIGNDLEEPLVVEGVRPSRGVSVLGRSRSRSSSLRRA
DGQIAR*
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mRNA from alignment at L-elsbetiae_contig16989:1613..3278-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16989.4676.1 ID=mRNA_L-elsbetiae_contig16989.4676.1|Name=mRNA_L-elsbetiae_contig16989.4676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1666bp|location=Sequence derived from alignment at L-elsbetiae_contig16989:1613..3278- (Laminarionema elsbetiae ELsaHSoW15)
TCACATCCCCCTTACAGTAGAAGTATTGTGGAGCAATTGTTTGTTGCGTA
GGACTTGGGTCACCCCCGGGAGGCATGTGCACCGACCTCCCGAAGGGGAA
CCTTGTTTGTATGTACATACGCCTATGTAGCAGCCTGGATATTACCCTGG
CTACTGGCCAATTGCAGCCACGATCTACGACATGTTGGGCACAGCAGGCT
CCTCCAACTTCAGAGCCGAACCGTCGCCACCTGTGTCGAATGGAATGTTG
AACGTGGTGTGTGTGCAGGTCTGGGCACTTGGCCTCTCCAGGCAAGCTGT
ACACGTGCGTGGACACCTCGGATTTGTTTGGGTGCATGAGCTGCTTGCGG
GATGAAGATTACAGGTGAAGCACCTTGACGCATGGTAGATACAGGGCTTT
AAGCGTCGTTGTTCACCACCCACAACCTGTTATGGGCCGACGACTTATTT
AATTGCACGTGTACACGGCAATGGTTGCGTTTATCAGTCGGGATGGATTT
GCAAAGGCCCAGGCGCGCAACCGTAGTTGGTGTGCACGTACAGCAGTAGT
CTTAGCCCTGGAATACCTTGCTCGGGTCTGGCCTGAATCGTGGAAGTTCG
GACAATCGGTGTATTTTTCTTTGTGAGAAGGCACCAGCCCACATCATCCT
TATATAGTGCTGCACGTCAGTTGTACATAGGTTGTGGGTTGTGGCAGTCA
AGTATTTCGGAGAGAAGAACGGTCGCCGTCGACCGCGCTCCGGACACCCG
ATGCCAGAATCTCCTCCCGCCGACTGTGCGCATTTAGGCTGCTCACATGT
GATTCCTGCACACTCCTGTGGTTTGTACCCTACTGGTTTGAGAGACAAGA
TCGCTACATCGATATTCTAGTCGTATTGCCTTCCCATCACACTGAAATTG
TTGTAACCCCCCCCCCTCCTGCAGCGAGGACTCCTGCAGCACATGCTGTG
CAATCGAGGCGGACGCTGAGTGCAGCAACCTGGAGTCGGAGTGGGAATTC
TACGCCTCTACCCTCTTCTTCATCTGCCTCTGCTGTTGTTTCACGGCGCT
GTGCGGCTTCACGGAGATCCGGCGAAAGAAGAAAGGGATCTCGTTTGCCC
AGGCGTGGTCGGTGCCGCAGGCGATGCCCATCCTTCAGACGTGGCCGAGA
AGGTCAGTCTCGGCCTCTGACGTGAACCAGGTAGACGGCGAAGGCCAGCA
GTGGGCCTCTCTTGCCGATGGCGAGGACGACGCCAAGCGCTACCCGATCG
CGGGCCTGGTGGACGACTCCGGCATGGCGTTCGGCTTCGTCTCGTCGCTG
CCGCAGTCAATTTTGACCTCTGTGGCAACCTCGCTGGGGCAGTCGGGCTC
CCCGCCTCCCCCGTCACCCCAGGAGCCCGAGTTGACAGTGTGGATAGCCA
GGGAGAATGTGGGCGCTTTGGGCACGGTGGAAGCAAGCAGACCACAGCAG
GACTCCGGAGGAGGCGGGCTCAGCGGCAGCAGCAGGAGCAGTAGCGGGGC
AAGCCGGACAGGGGGGAGGCGGCAGCGGGCCGTGGTGATTGGAAACGACT
TGGAAGAGCCCCTGGTGGTAGAAGGAGTTAGGCCTTCCCGAGGGGTCTCT
GTCTTAGGACGCTCAAGGAGTAGAAGTAGCTCGTTGAGGAGAGCGGATGG
CCAAATCGCACGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16989:1613..3278-

>mRNA_L-elsbetiae_contig16989.4676.1 ID=mRNA_L-elsbetiae_contig16989.4676.1|Name=mRNA_L-elsbetiae_contig16989.4676.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1542bp|location=Sequence derived from alignment at L-elsbetiae_contig16989:1613..3278- (Laminarionema elsbetiae ELsaHSoW15)
ATGAGCTGCTTGCGGGATGAAGATTACAGATGAGCTGCTTGCGGGATGAA
GATTACAGCGAGGACTCCTGCAGCACATGCTGTGCAATCGAGGCGGACGC
TGAGTGCAGCAACCTGGAGTCGGAGTGGGAATTCTACGCCTCTACCCTCT
TCTTCATCTGCCTCTGCTGTTGTTTCACGGCGCTGTGCGGCTTCACGGAG
ATCCGGCGAAAGAAGAAAGGGATCTCGTTTGCCCAGGCGTGGTCGGTGCC
GCAGGCGATGCCCATCCTTCAGACGTGGCCGAGAAGGTCAGTCTCGGCCT
CTGACGTGAACCAGGTAGACGGCGAAGGCCAGCAGTGGGCCTCTCTTGCC
GATGGCGAGGACGACGCCAAGCGCTACCCGATCGCGGGCCTGGTGGACGA
CTCCGGCATGGCGTTCGGCTTCGTCTCGTCGCTGCCGCAGTCAATTTTGA
CCTCTGTGGCAACCTCGCTGGGGCAGTCGGGCTCCCCGCCTCCCCCGTCA
CCCCAGGAGCCCGAGTTGACAGTGTGGATAGCCAGGGAGAATGTGGGCGC
TTTGGGCACGGTGGAAGCAAGCAGACCACAGCAGGACTCCGGAGGAGGCG
GGCTCAGCGGCAGCAGCAGGAGCAGTAGCGGGGCAAGCCGGACAGGGGGG
AGGCGGCAGCGGGCCGTGGTGATTGGAAACGACTTGGAAGAGCCCCTGGT
GGTAGAAGGAGTTAGGCCTTCCCGAGGGGTCTCTGTCTTAGGACGCTCAA
GGAGTAGAAGTAGCTCGTTGAGGAGAGCGGATGGCCAAATCGCACGTTGA
CGAGGACTCCTGCAGCACATGCTGTGCAATCGAGGCGGACGCTGAGTGCA
GCAACCTGGAGTCGGAGTGGGAATTCTACGCCTCTACCCTCTTCTTCATC
TGCCTCTGCTGTTGTTTCACGGCGCTGTGCGGCTTCACGGAGATCCGGCG
AAAGAAGAAAGGGATCTCGTTTGCCCAGGCGTGGTCGGTGCCGCAGGCGA
TGCCCATCCTTCAGACGTGGCCGAGAAGGTCAGTCTCGGCCTCTGACGTG
AACCAGGTAGACGGCGAAGGCCAGCAGTGGGCCTCTCTTGCCGATGGCGA
GGACGACGCCAAGCGCTACCCGATCGCGGGCCTGGTGGACGACTCCGGCA
TGGCGTTCGGCTTCGTCTCGTCGCTGCCGCAGTCAATTTTGACCTCTGTG
GCAACCTCGCTGGGGCAGTCGGGCTCCCCGCCTCCCCCGTCACCCCAGGA
GCCCGAGTTGACAGTGTGGATAGCCAGGGAGAATGTGGGCGCTTTGGGCA
CGGTGGAAGCAAGCAGACCACAGCAGGACTCCGGAGGAGGCGGGCTCAGC
GGCAGCAGCAGGAGCAGTAGCGGGGCAAGCCGGACAGGGGGGAGGCGGCA
GCGGGCCGTGGTGATTGGAAACGACTTGGAAGAGCCCCTGGTGGTAGAAG
GAGTTAGGCCTTCCCGAGGGGTCTCTGTCTTAGGACGCTCAAGGAGTAGA
AGTAGCTCGTTGAGGAGAGCGGATGGCCAAATCGCACGTTGA
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