mRNA_L-elsbetiae_contig16974.4674.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16974.4674.1
Unique NamemRNA_L-elsbetiae_contig16974.4674.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16974.4674.1 vs. uniprot
Match: D7FQ16_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ16_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 3.000e-97
Identity = 164/230 (71.30%), Postives = 180/230 (78.26%), Query Frame = 1 
Query:    1 MMDFQLDHPKQLGRYVIIGYCDIAAAGIRVLEGMSGTS-VTATADASGLRETGREALTFSGMGGAVFDGLPPFEAVHFDEGRAPGSDRRDEPSVTLLKLNTAVGQDLAAALSLSLVDLLADHRATLDRVIVAAAVQPPKRHQLPKEATTIPSDVVCTFSCDGHRDCGGESSPSLPPLSGLPALPAGARLADSFLTALVRLCRLEELPLTVLARTGYRTTGAAADVDGTDE 687
            M DF L  PK+LG+ VI+GYCDI AAG+RVLEGMSG S +T     S LRETGREAL FSGMG AVFDG+P  EAVHF E  A G+   DEPSVTLLKLNTAVGQ L+A+LSLSLVDLL   R TLDR+I+AAAVQPPKRHQ+P EA TIP D VCTFSC G       SSP    LS LP+LP GAR+ADSFLT LVRLCRLE++PLTVLAR GYRTTGAAADVDGTDE
Sbjct:    1 MADFTLSAPKRLGKTVILGYCDIGAAGVRVLEGMSGASQMTGEGACSRLRETGREALAFSGMGAAVFDGVPALEAVHF-ESSAGGT---DEPSVTLLKLNTAVGQGLSASLSLSLVDLLVARRTTLDRLIIAAAVQPPKRHQIPAEAATIPPDAVCTFSCGGVDS---NSSPLPASLSTLPSLPTGARIADSFLTTLVRLCRLEDVPLTVLARVGYRTTGAAADVDGTDE 223
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16974.4674.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FQ16_ECTSI3.000e-9771.30Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16974contigL-elsbetiae_contig16974:1240..3292 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_007850.1
Exons4
Model size687
Cds size687
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16974.4674.1prot_L-elsbetiae_contig16974.4674.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16974 1240..3292 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.725359-CDS-L-elsbetiae_contig16974:1239..13241622815705.725359-CDS-L-elsbetiae_contig16974:1239..1324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16974 1240..1324 +
1691683049.3959677-CDS-L-elsbetiae_contig16974:1239..13241691683049.3959677-CDS-L-elsbetiae_contig16974:1239..1324Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16974 1240..1324 +
1622815705.7376142-CDS-L-elsbetiae_contig16974:1891..20761622815705.7376142-CDS-L-elsbetiae_contig16974:1891..2076Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16974 1892..2076 +
1691683049.4073188-CDS-L-elsbetiae_contig16974:1891..20761691683049.4073188-CDS-L-elsbetiae_contig16974:1891..2076Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16974 1892..2076 +
1622815705.747635-CDS-L-elsbetiae_contig16974:2464..26171622815705.747635-CDS-L-elsbetiae_contig16974:2464..2617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16974 2465..2617 +
1691683049.4155877-CDS-L-elsbetiae_contig16974:2464..26171691683049.4155877-CDS-L-elsbetiae_contig16974:2464..2617Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16974 2465..2617 +
1622815705.7575135-CDS-L-elsbetiae_contig16974:3028..32921622815705.7575135-CDS-L-elsbetiae_contig16974:3028..3292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16974 3029..3292 +
1691683049.4246063-CDS-L-elsbetiae_contig16974:3028..32921691683049.4246063-CDS-L-elsbetiae_contig16974:3028..3292Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16974 3029..3292 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16974.4674.1

>prot_L-elsbetiae_contig16974.4674.1 ID=prot_L-elsbetiae_contig16974.4674.1|Name=mRNA_L-elsbetiae_contig16974.4674.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=229bp
MMDFQLDHPKQLGRYVIIGYCDIAAAGIRVLEGMSGTSVTATADASGLRE
TGREALTFSGMGGAVFDGLPPFEAVHFDEGRAPGSDRRDEPSVTLLKLNT
AVGQDLAAALSLSLVDLLADHRATLDRVIVAAAVQPPKRHQLPKEATTIP
SDVVCTFSCDGHRDCGGESSPSLPPLSGLPALPAGARLADSFLTALVRLC
RLEELPLTVLARTGYRTTGAAADVDGTDE
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mRNA from alignment at L-elsbetiae_contig16974:1240..3292+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16974.4674.1 ID=mRNA_L-elsbetiae_contig16974.4674.1|Name=mRNA_L-elsbetiae_contig16974.4674.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2053bp|location=Sequence derived from alignment at L-elsbetiae_contig16974:1240..3292+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGATTTTCAGCTCGATCATCCAAAGCAGCTGGGGAGATATGTCAT
CATCGGATATTGTGACATTGCAGCGGCCGGTATCCGTGAGTGCAAGACAG
CAGTACGCAAAGAAAATGTAGACTACAGTATGTAGAACGAGTATCCGCCG
TAGTCTACTAACCATGGCTGGTAGTGCGGAGCCATGGTTATCTAGCCGTC
CAATCTCTATAACGGTGATTGCGTTACGGCGGTGTACTCCGTGTTAGCCT
CTTGTACAGTTTGTTACCACGGGGGAGTGTTATCTTGTGCAATATTCCAT
TGTAGGAGAACTTGCCCATGGTTTTGATACTCTCTAGGAGAACCACACTG
CCGCTGTAGAGAACAGCGCCAAGTGCCGAAAGTACCGAGGATAGCAGGAT
ATGAAGAATATGTTGCACGCTGCTTGTTCTTCCGAAATCTCCAACCCAAC
AAGTCCTGCCTTTGGTATGCATACTGTCACTGAAGGCGTGTCGAATTGGA
ATTCTTGCTTTTTAATACTCCATGTGGCGGCACAACAGCACGCATATAAT
TATGTACGTGGGTGGCACAATGGGGTTTCGAGTGCTGGGCTGGCGGCCAT
CTGTTCCCGAAAGCTCAACCTTACCCTCGTTTGAAATCCTGCTTCGCCGA
AGGTGTTCTTGAGGGCATGTCGGGTACATCGGTAACCGCAACGGCAGATG
CTTCGGGTTTGCGCGAGACAGGGAGGGAGGCGCTAACGTTCTCCGGCATG
GGCGGGGCGGTTTTCGATGGCCTTCCACCTTTTGAGGCCGTGCACTTTGA
TGAGGGGAGGGCTCCGGGAAGCGACCGACGTGATGAGGTACGACATGCCT
TCCAAGATTCGCGTTGGCCCATGCAGCTGGATCCACGGCGATCTTGCGTT
GTTGACGCGATGCTCAAGGCTCTCTTCGCTTGCCGTAACTCTGACGTTGT
CTCCACGCGTCATCCTTCCTCCTTGTCCCGACCCCCGCCTCTGTGTCCCA
ACCTTGCACTCTATTTTTGCCCTTCGTTTTTTGTCAAATTATTTTATCGT
GCGGCCCTCTTGGCCACAAGCCGCACATCTGTCTGCTCGAAAACGCCGGC
TTCGCACGAATACCTTGCCGCCCACGTCGCACACGTCTCGCTCACGCCCG
ATTTGCTTATTTCCATCTGCTACTTTTCTGCCTGTTTGTTCTCTTTTGTT
TCTCGTTCCGTTGTTTCGGTTCCAGCCGTCCGTCACCCTGCTGAAACTCA
ATACTGCGGTCGGGCAGGACCTCGCGGCAGCGCTGTCGTTGTCTCTTGTC
GATCTGCTGGCCGATCACCGAGCAACATTGGATAGGGTTATCGTCGCGGC
CGCTGTGCAGCCCCCCAAGAGGCACCAGGTGCGCCGGACTGAAGTGCTGC
TAATTTGCTGTCTTTTCCCCGTTTGCGGTGCAAGCACGGCTTACGCAACG
CATGGGGCTCACGTCTGCCTCCGAAAGAACCTGCTGTTGTAGTTATTCGT
TGCCGTCCTTCTCGTTGGTCGGATCGCAACCGCGGTGTCCGGGAGAGAGA
GAGGGCTGATAGAAACCCTGTACCAGAACACGTTTGCTTTAGTCACCCAC
TTTTCCTCTTGTTTTTTTGCCTTCCAGGTATTGGGAATCTCGCCTCTAAC
GCTTCGTCCCTCCCCGTCCCCTCTCACCCACCCTCGTGTCCCTCACGCAC
GGCGCTCGCCCCGCGACCGTAATTTGACCGTCCATGTACCCTTGCGGATT
CTGTTTGTCTCTACACCTCCCGGTGTGTTTCTCGACCAGCTGCCGAAAGA
AGCGACAACCATCCCGTCGGACGTTGTGTGCACCTTCTCCTGCGACGGCC
ACCGCGACTGCGGCGGCGAAAGCAGCCCCTCTCTTCCCCCGCTGTCCGGC
CTCCCGGCGCTTCCCGCGGGGGCTCGCCTGGCTGACTCATTCCTCACCGC
CTTGGTGCGGCTCTGCAGGCTCGAGGAGTTGCCGTTGACGGTGCTGGCGC
GGACGGGCTACCGTACGACGGGAGCGGCCGCGGATGTGGACGGAACTGAC
GAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16974:1240..3292+

>mRNA_L-elsbetiae_contig16974.4674.1 ID=mRNA_L-elsbetiae_contig16974.4674.1|Name=mRNA_L-elsbetiae_contig16974.4674.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1374bp|location=Sequence derived from alignment at L-elsbetiae_contig16974:1240..3292+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGATTTTCAGCTCGATCATCCAAAGCAGCTGGGGAGATATGTCAT
CATCGGATATTGTGACATTGCAGCGGCCGGTATCCATGATGGATTTTCAG
CTCGATCATCCAAAGCAGCTGGGGAGATATGTCATCATCGGATATTGTGA
CATTGCAGCGGCCGGTATCCGTGTTCTTGAGGGCATGTCGGGTACATCGG
TAACCGCAACGGCAGATGCTTCGGGTTTGCGCGAGACAGGGAGGGAGGCG
CTAACGTTCTCCGGCATGGGCGGGGCGGTTTTCGATGGCCTTCCACCTTT
TGAGGCCGTGCACTTTGATGAGGGGAGGGCTCCGGGAAGCGACCGACGTG
ATGAGGTGTTCTTGAGGGCATGTCGGGTACATCGGTAACCGCAACGGCAG
ATGCTTCGGGTTTGCGCGAGACAGGGAGGGAGGCGCTAACGTTCTCCGGC
ATGGGCGGGGCGGTTTTCGATGGCCTTCCACCTTTTGAGGCCGTGCACTT
TGATGAGGGGAGGGCTCCGGGAAGCGACCGACGTGATGAGCCGTCCGTCA
CCCTGCTGAAACTCAATACTGCGGTCGGGCAGGACCTCGCGGCAGCGCTG
TCGTTGTCTCTTGTCGATCTGCTGGCCGATCACCGAGCAACATTGGATAG
GGTTATCGTCGCGGCCGCTGTGCAGCCCCCCAAGAGGCACCAGCCGTCCG
TCACCCTGCTGAAACTCAATACTGCGGTCGGGCAGGACCTCGCGGCAGCG
CTGTCGTTGTCTCTTGTCGATCTGCTGGCCGATCACCGAGCAACATTGGA
TAGGGTTATCGTCGCGGCCGCTGTGCAGCCCCCCAAGAGGCACCAGCTGC
CGAAAGAAGCGACAACCATCCCGTCGGACGTTGTGTGCACCTTCTCCTGC
GACGGCCACCGCGACTGCGGCGGCGAAAGCAGCCCCTCTCTTCCCCCGCT
GTCCGGCCTCCCGGCGCTTCCCGCGGGGGCTCGCCTGGCTGACTCATTCC
TCACCGCCTTGGTGCGGCTCTGCAGGCTCGAGGAGTTGCCGTTGACGGTG
CTGGCGCGGACGGGCTACCGTACGACGGGAGCGGCCGCGGATGTGGACGG
AACTGACGAGCTGCCGAAAGAAGCGACAACCATCCCGTCGGACGTTGTGT
GCACCTTCTCCTGCGACGGCCACCGCGACTGCGGCGGCGAAAGCAGCCCC
TCTCTTCCCCCGCTGTCCGGCCTCCCGGCGCTTCCCGCGGGGGCTCGCCT
GGCTGACTCATTCCTCACCGCCTTGGTGCGGCTCTGCAGGCTCGAGGAGT
TGCCGTTGACGGTGCTGGCGCGGACGGGCTACCGTACGACGGGAGCGGCC
GCGGATGTGGACGGAACTGACGAG
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