mRNA_L-elsbetiae_contig16968.4670.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16968.4670.1
Unique NamemRNA_L-elsbetiae_contig16968.4670.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16968.4670.1 vs. uniprot
Match: A0A6H5J8D6_9PHAE (Protein kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8D6_9PHAE)

HSP 1 Score: 126 bits (316), Expect = 4.300e-32
Identity = 61/67 (91.04%), Postives = 63/67 (94.03%), Query Frame = 1
Query:   10 QAIWIVSELCARGSLRQVLDDKGAPLAPRARLRVAVDVAEGMLYLHSREEPIIHRDLKSHNIFMMED 210
            QAIWIVSELC RGSLRQVLDD+G  L PRARLRVAVDVAEGMLYLHSREEP+IHRDLKSHNIFMMED
Sbjct: 1146 QAIWIVSELCPRGSLRQVLDDRGTSLTPRARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMED 1212          
BLAST of mRNA_L-elsbetiae_contig16968.4670.1 vs. uniprot
Match: D7FTR3_ECTSI (Similar to Serine/threonine-protein kinase CTR1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTR3_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 2.020e-31
Identity = 60/66 (90.91%), Postives = 62/66 (93.94%), Query Frame = 1
Query:   13 AIWIVSELCARGSLRQVLDDKGAPLAPRARLRVAVDVAEGMLYLHSREEPIIHRDLKSHNIFMMED 210
            AIWIVSELC RGSLRQVLDD+G PL P ARLRVAVDVAEGMLYLHSREEP+IHRDLKSHNIFMMED
Sbjct:  521 AIWIVSELCPRGSLRQVLDDRGTPLTPWARLRVAVDVAEGMLYLHSREEPVIHRDLKSHNIFMMED 586          
BLAST of mRNA_L-elsbetiae_contig16968.4670.1 vs. uniprot
Match: A0A835Z8B5_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8B5_9STRA)

HSP 1 Score: 107 bits (268), Expect = 6.690e-27
Identity = 50/65 (76.92%), Postives = 58/65 (89.23%), Query Frame = 1
Query:   13 AIWIVSELCARGSLRQVLDDKGAPLAPRARLRVAVDVAEGMLYLHSREEPIIHRDLKSHNIFMME 207
            AIWIVSELC+RGSLRQVLDD+   L P  RLR+AVDVAEGMLYLH+R++PIIHRDLKSHN+F+ E
Sbjct:   97 AIWIVSELCSRGSLRQVLDDRSQQLTPVQRLRIAVDVAEGMLYLHTRDQPIIHRDLKSHNVFIQE 161          
BLAST of mRNA_L-elsbetiae_contig16968.4670.1 vs. uniprot
Match: A0A836CLH3_9STRA (Kinase-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLH3_9STRA)

HSP 1 Score: 107 bits (266), Expect = 7.060e-26
Identity = 51/66 (77.27%), Postives = 58/66 (87.88%), Query Frame = 1
Query:   10 QAIWIVSELCARGSLRQVLDDKGAPLAPRARLRVAVDVAEGMLYLHSREEPIIHRDLKSHNIFMME 207
            QAIWIVSELC+RGSLRQVLDD+   L    RLR+AVD+AEGMLYLHSRE+PIIHRDLKSHN+F+ E
Sbjct:   96 QAIWIVSELCSRGSLRQVLDDRSQHLPLVMRLRIAVDIAEGMLYLHSREQPIIHRDLKSHNVFIQE 161          
BLAST of mRNA_L-elsbetiae_contig16968.4670.1 vs. uniprot
Match: F0YIL7_AURAN (Protein kinase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIL7_AURAN)

HSP 1 Score: 99.4 bits (246), Expect = 9.460e-24
Identity = 46/66 (69.70%), Postives = 54/66 (81.82%), Query Frame = 1
Query:   10 QAIWIVSELCARGSLRQVLDDKGAPLAPRARLRVAVDVAEGMLYLHSREEPIIHRDLKSHNIFMME 207
            QAIWIVSELC+ GSLR VLDD    L    RLR+A+DVAEGMLYLH+R+ PI+HRDLKSHN+F+ E
Sbjct:   78 QAIWIVSELCSHGSLRSVLDDASLELGLETRLRMAIDVAEGMLYLHTRDHPIVHRDLKSHNLFVAE 143          
BLAST of mRNA_L-elsbetiae_contig16968.4670.1 vs. uniprot
Match: A0A7S2RPC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPC6_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.600e-23
Identity = 47/68 (69.12%), Postives = 57/68 (83.82%), Query Frame = 1
Query:   10 QAIWIVSELCARGSLRQVLDDKGAPLAPRARLRVAVDVAEGMLYLHSREEPIIHRDLKSHNIFMMEDP 213
            QAIW+VSELC+ GSLRQVLDDK   L    R+++A+DVAEGMLYLHSR+ PIIHRD+KSHN+F+ E P
Sbjct:  293 QAIWLVSELCSLGSLRQVLDDKHRELPISTRIQMAIDVAEGMLYLHSRDPPIIHRDIKSHNLFVQESP 360          
BLAST of mRNA_L-elsbetiae_contig16968.4670.1 vs. uniprot
Match: A0A7S3XPL6_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XPL6_HETAK)

HSP 1 Score: 100 bits (248), Expect = 2.440e-23
Identity = 46/66 (69.70%), Postives = 58/66 (87.88%), Query Frame = 1
Query:   10 QAIWIVSELCARGSLRQVLDDKGAPLAPRARLRVAVDVAEGMLYLHSREEPIIHRDLKSHNIFMME 207
            Q++WIVSELC+RGSLRQVL+D+   L+ R RL++A+DVAEGMLYLH+ E PI+HRDLKSHNIF+ E
Sbjct:  195 QSLWIVSELCSRGSLRQVLNDRRTRLSTRRRLQLAIDVAEGMLYLHNHEAPIVHRDLKSHNIFIHE 260          
BLAST of mRNA_L-elsbetiae_contig16968.4670.1 vs. uniprot
Match: A0A8J2X365_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2X365_9STRA)

HSP 1 Score: 101 bits (251), Expect = 2.570e-23
Identity = 47/64 (73.44%), Postives = 55/64 (85.94%), Query Frame = 1
Query:   10 QAIWIVSELCARGSLRQVLDDKGAPLAPRARLRVAVDVAEGMLYLHSREEPIIHRDLKSHNIFM 201
            QAIWIVSELCA GSLRQVLDD    L+   RLR+A+DVAEGML+LH+RE PI+HRDLKSHN+F+
Sbjct:  628 QAIWIVSELCAHGSLRQVLDDDKVELSVETRLRMAIDVAEGMLFLHTRERPIVHRDLKSHNLFV 691          
BLAST of mRNA_L-elsbetiae_contig16968.4670.1 vs. uniprot
Match: A0A7S0CKJ9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0CKJ9_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 5.660e-23
Identity = 45/66 (68.18%), Postives = 57/66 (86.36%), Query Frame = 1
Query:   10 QAIWIVSELCARGSLRQVLDDKGAPLAPRARLRVAVDVAEGMLYLHSREEPIIHRDLKSHNIFMME 207
            QAIWIVSELC+ GSLRQ+LDDK   L+ R RLR+A+ VAEGM+Y+H+++ PI+HRDLKSHNIF+ E
Sbjct:   24 QAIWIVSELCSLGSLRQLLDDKEKDLSIRLRLRLALHVAEGMMYMHTQDPPILHRDLKSHNIFVHE 89          
BLAST of mRNA_L-elsbetiae_contig16968.4670.1 vs. uniprot
Match: B8CC40_THAPS (Protein kinase domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CC40_THAPS)

HSP 1 Score: 91.7 bits (226), Expect = 9.830e-21
Identity = 44/66 (66.67%), Postives = 54/66 (81.82%), Query Frame = 1
Query:   10 QAIWIVSELCARGSLRQVLDDKGAPLAPRARLRVAVDVAEGMLYLHSREEPIIHRDLKSHNIFMME 207
            QAIWIVSELC+ GSLRQ+LDD+   L+   RL +A+ VAEGM YLH+++ PIIHRDLKSHNIF+ E
Sbjct:   83 QAIWIVSELCSLGSLRQLLDDRERKLSMDVRLNLALQVAEGMAYLHTQDPPIIHRDLKSHNIFVHE 148          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16968.4670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5J8D6_9PHAE4.300e-3291.04Protein kinase domain-containing protein n=1 Tax=E... [more]
D7FTR3_ECTSI2.020e-3190.91Similar to Serine/threonine-protein kinase CTR1 n=... [more]
A0A835Z8B5_9STRA6.690e-2776.92Kinase-like domain-containing protein n=1 Tax=Trib... [more]
A0A836CLH3_9STRA7.060e-2677.27Kinase-like domain-containing protein n=1 Tax=Trib... [more]
F0YIL7_AURAN9.460e-2469.70Protein kinase domain-containing protein (Fragment... [more]
A0A7S2RPC6_9STRA1.600e-2369.12Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XPL6_HETAK2.440e-2369.70Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A8J2X365_9STRA2.570e-2373.44Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S0CKJ9_9STRA5.660e-2368.18Hypothetical protein (Fragment) n=1 Tax=Proboscia ... [more]
B8CC40_THAPS9.830e-2166.67Protein kinase domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16968contigL-elsbetiae_contig16968:3002..3220 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score125.2
Seed ortholog evalue1.3e-26
Seed eggNOG ortholog2880.D7FTR3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein kinase activity
EggNOG OGsCOG0515@1,KOG0192@2759
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.3200393-CDS-L-elsbetiae_contig16968:3001..32201622815705.3200393-CDS-L-elsbetiae_contig16968:3001..3220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16968 3002..3220 +
1691683049.2113833-CDS-L-elsbetiae_contig16968:3001..32201691683049.2113833-CDS-L-elsbetiae_contig16968:3001..3220Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16968 3002..3220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16968.4670.1prot_L-elsbetiae_contig16968.4670.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16968 3002..3220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16968.4670.1

>prot_L-elsbetiae_contig16968.4670.1 ID=prot_L-elsbetiae_contig16968.4670.1|Name=mRNA_L-elsbetiae_contig16968.4670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
LLPQAIWIVSELCARGSLRQVLDDKGAPLAPRARLRVAVDVAEGMLYLHS
REEPIIHRDLKSHNIFMMEDPE*
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mRNA from alignment at L-elsbetiae_contig16968:3002..3220+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16968.4670.1 ID=mRNA_L-elsbetiae_contig16968.4670.1|Name=mRNA_L-elsbetiae_contig16968.4670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=219bp|location=Sequence derived from alignment at L-elsbetiae_contig16968:3002..3220+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCTGCCGCAGGCCATCTGGATCGTCAGCGAGCTCTGCGCTCGGGGCAG CCTGAGGCAAGTGCTGGACGACAAAGGAGCGCCGCTGGCGCCGAGGGCAA GGTTGAGGGTTGCCGTGGACGTGGCGGAGGGGATGCTGTACCTGCACAGC AGGGAAGAGCCCATCATCCACCGCGACCTCAAGAGCCACAACATCTTCAT GATGGAGGATCCAGAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16968:3002..3220+

>mRNA_L-elsbetiae_contig16968.4670.1 ID=mRNA_L-elsbetiae_contig16968.4670.1|Name=mRNA_L-elsbetiae_contig16968.4670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig16968:3002..3220+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCTGCCGCAGGCCATCTGGATCGTCAGCGAGCTCTGCGCTCGGGGCAG
CCTGAGGCAAGTGCTGGACGACAAAGGAGCGCCGCTGGCGCCGAGGGCAA
GGTTGAGGGTTGCCGTGGACGTGGCGGAGGGGATGCTGTACCTGCACAGC
AGGGAAGAGCCCATCATCCACCGCGACCTCAAGAGCCACAACATCTTCAT
GATGGAGGATCCAGAGTGACTGCTGCCGCAGGCCATCTGGATCGTCAGCG
AGCTCTGCGCTCGGGGCAGCCTGAGGCAAGTGCTGGACGACAAAGGAGCG
CCGCTGGCGCCGAGGGCAAGGTTGAGGGTTGCCGTGGACGTGGCGGAGGG
GATGCTGTACCTGCACAGCAGGGAAGAGCCCATCATCCACCGCGACCTCA
AGAGCCACAACATCTTCATGATGGAGGATCCAGAGTGA
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