mRNA_L-elsbetiae_contig16964.4669.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16964.4669.1
Unique NamemRNA_L-elsbetiae_contig16964.4669.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16964.4669.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16964contigL-elsbetiae_contig16964:1984..2645 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size408
Cds size408
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815705.2728934-CDS-L-elsbetiae_contig16964:1983..21391622815705.2728934-CDS-L-elsbetiae_contig16964:1983..2139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16964 1984..2139 -
1691683049.1891189-CDS-L-elsbetiae_contig16964:1983..21391691683049.1891189-CDS-L-elsbetiae_contig16964:1983..2139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16964 1984..2139 -
1622815705.2830982-CDS-L-elsbetiae_contig16964:2393..26451622815705.2830982-CDS-L-elsbetiae_contig16964:2393..2645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16964 2394..2645 -
1691683049.1993406-CDS-L-elsbetiae_contig16964:2393..26451691683049.1993406-CDS-L-elsbetiae_contig16964:2393..2645Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16964 2394..2645 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16964.4669.1prot_L-elsbetiae_contig16964.4669.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16964 1984..2645 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16964.4669.1

>prot_L-elsbetiae_contig16964.4669.1 ID=prot_L-elsbetiae_contig16964.4669.1|Name=mRNA_L-elsbetiae_contig16964.4669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=136bp
MFCRARSGDILPAKCPGHPADFQGNAKSLVSFFKYVSLGSLCIDIDTDRC
RVEVTVSHDHKMMSENVAGCVEYGLRVCREGSLEASDLCLVRTRLANDDE
DPKTSPYLLESPFEGSQKSRQLKQISSLFGVKATHV
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mRNA from alignment at L-elsbetiae_contig16964:1984..2645-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16964.4669.1 ID=mRNA_L-elsbetiae_contig16964.4669.1|Name=mRNA_L-elsbetiae_contig16964.4669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=662bp|location=Sequence derived from alignment at L-elsbetiae_contig16964:1984..2645- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTTGTCGAGCCCGATCCGGCGATATATTACCCGCGAAATGTCCTGG
TCATCCGGCTGATTTCCAGGGGAACGCCAAGAGCTTAGTTAGCTTCTTCA
AGTACGTCAGCCTTGGGTCGCTCTGCATCGACATCGACACCGACAGATGC
CGTGTGGAGGTTACGGTATCTCATGACCACAAGATGATGTCGGAGAATGT
GGCGGGGTGCGTGGAGTATGGCCTTCGAGTCTGCCGCGAGGGGAGCTTGG
AGGTAAGTTTTTGACAGCTGGAGATTGCAGACCTCTCCAGGTTGATCCCA
GCAGAGGGGCCATTCTGGTTACGTTCCGCTCCGCACGCATGATGTGTCGC
GCATCACGGAAACACGTAAAGCGCTGGGAGTTAACCTTGTTGCAGCGCAC
CCTGCGTAACCCCCCCGCCCCCCCCCCTCTCCTCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCGCTTTCCGCGGCGGTCTTGGCGCACT
CACCAGGCGAGTGACTTATGTCTGGTTCGAACCAGGCTAGCGAACGATGA
TGAAGACCCCAAGACGTCGCCATATCTTCTAGAGTCTCCCTTTGAAGGCT
CTCAGAAAAGCCGGCAGCTGAAGCAAATTTCCTCCCTGTTCGGCGTCAAG
GCAACCCATGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16964:1984..2645-

>mRNA_L-elsbetiae_contig16964.4669.1 ID=mRNA_L-elsbetiae_contig16964.4669.1|Name=mRNA_L-elsbetiae_contig16964.4669.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=816bp|location=Sequence derived from alignment at L-elsbetiae_contig16964:1984..2645- (Laminarionema elsbetiae ELsaHSoW15)
ATGTTTTGTCGAGCCCGATCCGGCGATATATTACCCGCGAAATGTCCTGG
TCATCCGGCTGATTTCCAGGGGAACGCCAAGAGCTTAGTTAGCTTCTTCA
AGTACGTCAGCCTTGGGTCGCTCTGCATCGACATCGACACCGACAGATGC
CGTGTGGAGGTTACGGTATCTCATGACCACAAGATGATGTCGGAGAATGT
GGCGGGGTGCGTGGAGTATGGCCTTCGAGTCTGCCGCGAGGGGAGCTTGG
AGATGTTTTGTCGAGCCCGATCCGGCGATATATTACCCGCGAAATGTCCT
GGTCATCCGGCTGATTTCCAGGGGAACGCCAAGAGCTTAGTTAGCTTCTT
CAAGTACGTCAGCCTTGGGTCGCTCTGCATCGACATCGACACCGACAGAT
GCCGTGTGGAGGTTACGGTATCTCATGACCACAAGATGATGTCGGAGAAT
GTGGCGGGGTGCGTGGAGTATGGCCTTCGAGTCTGCCGCGAGGGGAGCTT
GGAGGCGAGTGACTTATGTCTGGTTCGAACCAGGCTAGCGAACGATGATG
AAGACCCCAAGACGTCGCCATATCTTCTAGAGTCTCCCTTTGAAGGCTCT
CAGAAAAGCCGGCAGCTGAAGCAAATTTCCTCCCTGTTCGGCGTCAAGGC
AACCCATGTGGCGAGTGACTTATGTCTGGTTCGAACCAGGCTAGCGAACG
ATGATGAAGACCCCAAGACGTCGCCATATCTTCTAGAGTCTCCCTTTGAA
GGCTCTCAGAAAAGCCGGCAGCTGAAGCAAATTTCCTCCCTGTTCGGCGT
CAAGGCAACCCATGTG
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