mRNA_L-elsbetiae_contig16958.4665.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16958.4665.1
Unique NamemRNA_L-elsbetiae_contig16958.4665.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig16958.4665.1 vs. uniprot
Match: D7FV82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FV82_ECTSI)

HSP 1 Score: 136 bits (342), Expect = 1.500e-35
Identity = 71/77 (92.21%), Postives = 75/77 (97.40%), Query Frame = 1
Query:    1 MAVRVLDELDMGKLMMLVHQLLRLIRSGPRRFPRRDLVNLQEDLAELVGERGLVSVGQQLRIVQRIQRSYKCLLPRR 231
            MAVRVLDELD+GKLMMLVHQ+LRLIRSGPRRFPRRDLVNL EDLAELVGERGLVSVGQQL+IVQR+QRSYK LLPRR
Sbjct:  691 MAVRVLDELDLGKLMMLVHQVLRLIRSGPRRFPRRDLVNLHEDLAELVGERGLVSVGQQLQIVQRVQRSYKFLLPRR 767          
BLAST of mRNA_L-elsbetiae_contig16958.4665.1 vs. uniprot
Match: A0A7R9VRK5_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VRK5_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.910e-12
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 1
Query:   28 DMGKLMMLVHQLLRLIRSGPRRFPRRDLVNLQEDLAELVGERGLVSVGQQLRIVQRIQRSYKCL 219
            D+G LM+L+H+   ++    RRF R +L N+ EDLAEL GERG VSV QQL+IV R+ R+Y  L
Sbjct:   83 DLGMLMLLIHECRTILSDNRRRFRRNELRNVSEDLAELAGERGAVSVQQQLQIVARMSRTYPFL 146          
BLAST of mRNA_L-elsbetiae_contig16958.4665.1 vs. uniprot
Match: A0A835YHP7_9STRA (ATP synthase regulation protein NCA2-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHP7_9STRA)

HSP 1 Score: 68.2 bits (165), Expect = 1.380e-11
Identity = 34/61 (55.74%), Postives = 48/61 (78.69%), Query Frame = 1
Query:    7 VRVLDELDMGKLMMLVHQLLRLIRSGPRRFPRRDLVNLQEDLAELVGERGLVSVGQQLRIV 189
            ++ LDELD+GKL++L +Q+ RL+    RRF R +L NL EDL EL+G+RG+V+VGQQL I+
Sbjct:  711 LKTLDELDLGKLVLLAYQVRRLVGRHERRFRRDELHNLNEDLCELMGDRGIVTVGQQLSIL 771          
BLAST of mRNA_L-elsbetiae_contig16958.4665.1 vs. uniprot
Match: A0A7S3QA01_9STRA (Hypothetical protein n=3 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3QA01_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 3.140e-10
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 1
Query:   10 RVLDELDMGKLMMLVHQLLRLIRSGPRRFPRRDLVNLQEDLAELVGERGLVSVGQQLRIVQRIQRSYKCL 219
            ++L   D+G LM+LVH+   ++    RRF R +L N  EDLAEL GERG VSV QQL+I+ R+ R+Y  L
Sbjct:  860 QILSSDDLGMLMLLVHECRVILWQDRRRFTRSELRNASEDLAELAGERGAVSVRQQLQIIARMCRTYSFL 929          
BLAST of mRNA_L-elsbetiae_contig16958.4665.1 vs. uniprot
Match: A0A7S4MTH1_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MTH1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 4.140e-10
Identity = 35/69 (50.72%), Postives = 46/69 (66.67%), Query Frame = 1
Query:   13 VLDELDMGKLMMLVHQLLRLIRSGPRRFPRRDLVNLQEDLAELVGERGLVSVGQQLRIVQRIQRSYKCL 219
            VL   D+G LM+L+H+   ++    RRF R  L ++ EDLAEL GERG VSV QQL+IV R+ R+Y  L
Sbjct:  378 VLSAEDLGMLMLLIHECRTILNENRRRFARSGLRSVSEDLAELAGERGAVSVQQQLQIVARMCRTYPFL 446          
BLAST of mRNA_L-elsbetiae_contig16958.4665.1 vs. uniprot
Match: A0A7S2R429_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R429_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 6.880e-10
Identity = 34/70 (48.57%), Postives = 49/70 (70.00%), Query Frame = 1
Query:   13 VLDELDMGKLMMLVHQLLRLIRSGPRRFPRRDLVNLQEDLAELVGERGLVSVGQQLRIVQRIQRSYKCLL 222
            VL+  D+G LM+LVH    ++    RRF +++L ++ EDLAEL GE+G VSV QQLRI+ R+ R+Y  L+
Sbjct:  135 VLNSDDLGMLMLLVHGYRTILWRYRRRFSKKELSSISEDLAELTGEKGPVSVQQQLRIIGRMCRTYPFLM 204          
BLAST of mRNA_L-elsbetiae_contig16958.4665.1 vs. uniprot
Match: A0A7S3L1P6_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L1P6_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 7.760e-10
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    1 MAVRVLDELDMGKLMMLVHQLLRLIRSGPRRFPRRDLVNLQEDLAELVGERGLVSVGQQLRIVQRIQRSYKCL 219
            + V VL   D+G +M+L+H+L  ++    RRF R  L  + EDLAEL GERG VSV QQL+I+ R+ R+Y  L
Sbjct:  388 LGVCVLSSDDLGLIMLLIHELRTILMRESRRFTRDVLRGVSEDLAELAGERGAVSVRQQLQILTRMNRNYSFL 460          
BLAST of mRNA_L-elsbetiae_contig16958.4665.1 vs. uniprot
Match: A0A6U3SXL5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3SXL5_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.080e-9
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 1
Query:   28 DMGKLMMLVHQLLRLIRSGPRRFPRRDLVNLQEDLAELVGERGLVSVGQQLRIVQRIQRSYKCL 219
            D+G +M+LVHQ  ++++   RRF +  + N+ EDLAEL GERG V+V QQL+I+ R+ R+Y  L
Sbjct:  542 DLGMVMLLVHQCRKILQEDGRRFSQSTIRNVSEDLAELAGERGAVTVRQQLQILSRMGRTYPFL 605          
BLAST of mRNA_L-elsbetiae_contig16958.4665.1 vs. uniprot
Match: A0A7S4UYT7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4UYT7_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 1.090e-9
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 1
Query:   28 DMGKLMMLVHQLLRLIRSGPRRFPRRDLVNLQEDLAELVGERGLVSVGQQLRIVQRIQRSYKCL 219
            D+G +M+LVHQ  ++++   RRF +  + N+ EDLAEL GERG V+V QQL+I+ R+ R+Y  L
Sbjct:  741 DLGMVMLLVHQCRKILQEDGRRFSQSTIRNVSEDLAELAGERGAVTVRQQLQILSRMGRTYPFL 804          
BLAST of mRNA_L-elsbetiae_contig16958.4665.1 vs. uniprot
Match: A0A7S2LEI8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LEI8_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.610e-9
Identity = 35/68 (51.47%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    7 VRVLDELDMGKLMMLVHQLLRLIRSGPRRFPRRDLVNLQEDLAELVGERGLVSVGQQLRIVQRIQRSY 210
            V +L+  D+G L++LVH+   LI    RRF  +++ N+ EDLAEL GERG VSV QQL IV R+ R Y
Sbjct:  222 VVMLNTNDLGMLVLLVHECRTLILKNKRRFSDQEIRNVLEDLAELSGERGCVSVKQQLEIVSRMSRVY 289          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16958.4665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 19
Match NameE-valueIdentityDescription
D7FV82_ECTSI1.500e-3592.21Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7R9VRK5_9STRA3.910e-1253.13Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A835YHP7_9STRA1.380e-1155.74ATP synthase regulation protein NCA2-domain-contai... [more]
A0A7S3QA01_9STRA3.140e-1050.00Hypothetical protein n=3 Tax=Chaetoceros debilis T... [more]
A0A7S4MTH1_9STRA4.140e-1050.72Hypothetical protein n=1 Tax=Odontella aurita TaxI... [more]
A0A7S2R429_9STRA6.880e-1048.57Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S3L1P6_9STRA7.760e-1047.95Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A6U3SXL5_9STRA1.080e-948.44Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4UYT7_9STRA1.090e-948.44Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S2LEI8_9STRA1.610e-951.47Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16958contigL-elsbetiae_contig16958:2710..2943 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score138.7
Seed ortholog evalue1.2e-30
Seed eggNOG ortholog2880.D7FV82
KEGG koko:K18158
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0016020,GO:0019867,GO:0031090,GO:0031966,GO:0031967,GO:0031968,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0098588,GO:0098805
EggNOG free text desc.Nuclear control of ATPase protein
EggNOG OGs28M9W@1,2QQIS@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03029
Exons1
Model size234
Cds size234
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815704.880798-CDS-L-elsbetiae_contig16958:2709..29431622815704.880798-CDS-L-elsbetiae_contig16958:2709..2943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16958 2710..2943 -
1691683048.9236615-CDS-L-elsbetiae_contig16958:2709..29431691683048.9236615-CDS-L-elsbetiae_contig16958:2709..2943Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16958 2710..2943 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16958.4665.1prot_L-elsbetiae_contig16958.4665.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16958 2710..2943 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16958.4665.1

>prot_L-elsbetiae_contig16958.4665.1 ID=prot_L-elsbetiae_contig16958.4665.1|Name=mRNA_L-elsbetiae_contig16958.4665.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
MAVRVLDELDMGKLMMLVHQLLRLIRSGPRRFPRRDLVNLQEDLAELVGE
RGLVSVGQQLRIVQRIQRSYKCLLPRR*
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mRNA from alignment at L-elsbetiae_contig16958:2710..2943-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16958.4665.1 ID=mRNA_L-elsbetiae_contig16958.4665.1|Name=mRNA_L-elsbetiae_contig16958.4665.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=234bp|location=Sequence derived from alignment at L-elsbetiae_contig16958:2710..2943- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGTGAGAGTGCTGGACGAGCTCGACATGGGAAAGCTCATGATGCT CGTCCACCAACTCCTGAGGCTGATTCGGTCTGGGCCTCGACGGTTCCCTC GAAGAGACCTCGTCAACCTGCAGGAAGATCTGGCCGAGCTGGTGGGAGAG AGGGGCCTGGTGTCGGTGGGGCAGCAGCTCAGAATCGTGCAGCGGATTCA GCGCTCGTACAAGTGTCTCTTGCCTCGGCGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16958:2710..2943-

>mRNA_L-elsbetiae_contig16958.4665.1 ID=mRNA_L-elsbetiae_contig16958.4665.1|Name=mRNA_L-elsbetiae_contig16958.4665.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig16958:2710..2943- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGTGAGAGTGCTGGACGAGCTCGACATGGGAAAGCTCATGATGCT
CGTCCACCAACTCCTGAGGCTGATTCGGTCTGGGCCTCGACGGTTCCCTC
GAAGAGACCTCGTCAACCTGCAGGAAGATCTGGCCGAGCTGGTGGGAGAG
AGGGGCCTGGTGTCGGTGGGGCAGCAGCTCAGAATCGTGCAGCGGATTCA
GCGCTCGTACAAGTGTCTCTTGCCTCGGCGTTGAATGGCCGTGAGAGTGC
TGGACGAGCTCGACATGGGAAAGCTCATGATGCTCGTCCACCAACTCCTG
AGGCTGATTCGGTCTGGGCCTCGACGGTTCCCTCGAAGAGACCTCGTCAA
CCTGCAGGAAGATCTGGCCGAGCTGGTGGGAGAGAGGGGCCTGGTGTCGG
TGGGGCAGCAGCTCAGAATCGTGCAGCGGATTCAGCGCTCGTACAAGTGT
CTCTTGCCTCGGCGTTGA
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