mRNA_L-elsbetiae_contig1695.4662.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1695.4662.1
Unique NamemRNA_L-elsbetiae_contig1695.4662.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1695.4662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1695contigL-elsbetiae_contig1695:14223..15795 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size306
Cds size306
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1695.4662.1prot_L-elsbetiae_contig1695.4662.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1695 14223..15795 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815704.534638-CDS-L-elsbetiae_contig1695:14222..143211622815704.534638-CDS-L-elsbetiae_contig1695:14222..14321Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1695 14223..14321 -
1691683048.679167-CDS-L-elsbetiae_contig1695:14222..143211691683048.679167-CDS-L-elsbetiae_contig1695:14222..14321Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1695 14223..14321 -
1622815704.546762-CDS-L-elsbetiae_contig1695:15062..151881622815704.546762-CDS-L-elsbetiae_contig1695:15062..15188Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1695 15063..15188 -
1691683048.6923032-CDS-L-elsbetiae_contig1695:15062..151881691683048.6923032-CDS-L-elsbetiae_contig1695:15062..15188Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1695 15063..15188 -
1622815704.5618732-CDS-L-elsbetiae_contig1695:15714..157951622815704.5618732-CDS-L-elsbetiae_contig1695:15714..15795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1695 15715..15795 -
1691683048.7029715-CDS-L-elsbetiae_contig1695:15714..157951691683048.7029715-CDS-L-elsbetiae_contig1695:15714..15795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1695 15715..15795 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1695.4662.1

>prot_L-elsbetiae_contig1695.4662.1 ID=prot_L-elsbetiae_contig1695.4662.1|Name=mRNA_L-elsbetiae_contig1695.4662.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
GGRVGALLSPAAVTRHGGDPDKILEILSMIDDEWLDDIARAARGDPVPSR
CGLARISPSSSPPDNSRLESKHASPTDLNGLLGAPAATMAGGDLEAAVRL
AA
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mRNA from alignment at L-elsbetiae_contig1695:14223..15795-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1695.4662.1 ID=mRNA_L-elsbetiae_contig1695.4662.1|Name=mRNA_L-elsbetiae_contig1695.4662.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1573bp|location=Sequence derived from alignment at L-elsbetiae_contig1695:14223..15795- (Laminarionema elsbetiae ELsaHSoW15)
GGGGGACGTGTGGGAGCGCTGCTCTCTCCTGCCGCCGTGACGCGTCACGG
CGGCGATCCGGACAAGATCCTGGAGATATTGGTGGGGAGCGACGCGCGCA
CATTGCTCGATAAAGCCAGAAAATCGTAGAACGAGTGAATCCCACGCCTT
TCGAACCCAACCGAAGAGGTCCAGGCGATGCTTTCTCCGTATTGGTGTTT
TTGGGCGGGTTTCTCATCCGATCTGGTGCCCATCTGTCCACCAACACGCC
CCTCGACTATATATGTACTCTCTTTTAAAAAGTATACCGACTAAACGTGA
CCCTTCGAAGTCCAACCTGTGAATATCGTCGTCCCGGGGGGCCTGTTGTA
GACACACTATCCGTGCCTCACGACCCCCTACTACGGTACTACAGCTCATT
TTGTATGATGTGTGTACCTCCCGCTACATGTTTGGCCTTGTACGTGGAGC
GTTGCTCAGTTTTGTGATTGTCCCCTACGATGCGCTTGTGCTGCCGTGTA
GCCTCGTGAAGCGTTGCACAGCAGGTTTTCTCTTGACCCCCCAACGATGC
CCTGCTCTTATCGTGCGCTTTTTATTATGTTTCAATGCCGTTTTCGGCGT
GTATCAGTCGATGATCGACGACGAGTGGCTGGACGACATCGCGAGGGCGG
CCAGGGGGGATCCGGTGCCGTCGCGATGTGGCCTCGCGCGAATATCGCCG
TCATCTTCCCCGCCCGATAACAGCAGGCTAGAGGTGAGCCGTCAAAAACA
CCCCCTGGCTGTGTTTGTGCGAAGCCGTCTAACGAGGGCATGGGTGTGAC
GGCGGGTTTCTGTGTTGCTTCTTTCGGAGCCCCGAGGCCAGACCTTCCCG
CCCCACATACCTACTCGAACGGCTCTCCCGTGCCGGGGCCCCGGGCCGCG
GCCCGCTAAAATCACCCAAGGAAACCAAAGATGAAACGTCCCCACAGTGG
CTTCGTCCTTAAGCTGTGCGGACGGGAGGAGGGTTCCGGGGTGGATTTCG
CAATTCCGTAGGTACTATGTGGTGATGTAACGTACATACATAGAACGAAC
CCCCTTTCTGTGTTTTTTTCCGGTGGGAGTGGTGAAACGAAATTTCGGTG
GTCAACTGTTGCGCGCGGCCGATGCTTCGGCGCAGTCGTCCCTGCCTTAA
GGACACCAACACGTGAAGGACACTTCCCGCTTTGATTACGGGCACAGCAG
TTGTTTTGGTACTTAAAACCGCATTTCTTAAGAGTTCTCATAATGAAAGA
TACTCTATTGTACTTCGAAGTATGTATGCATGTAAACAATCCTCTAATTC
TTACGGAAGCTTTCTCGTGTTACAAGGTCACTGAAAACATAAGAATTCTT
GAAGCAGGGTCGCGACTGCTGTACTTGGAAATATCAACCCGCACCGTAAC
ACCCCCCCCTCCCCCCTCCCCCCCCTTCACCGCCCGCCCCACGCCGCCCC
GTTGTTGGCACGGCACGGACGTAGAGCAAGCACGCCAGTCCGACGGACTT
GAACGGCCTTCTCGGCGCACCGGCGGCGACGATGGCAGGAGGGGATCTGG
AAGCGGCCGTCCGCCTCGCCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1695:14223..15795-

>mRNA_L-elsbetiae_contig1695.4662.1 ID=mRNA_L-elsbetiae_contig1695.4662.1|Name=mRNA_L-elsbetiae_contig1695.4662.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig1695:14223..15795- (Laminarionema elsbetiae ELsaHSoW15)
GGGGGACGTGTGGGAGCGCTGCTCTCTCCTGCCGCCGTGACGCGTCACGG
CGGCGATCCGGACAAGATCCTGGAGATATTGGGGGGACGTGTGGGAGCGC
TGCTCTCTCCTGCCGCCGTGACGCGTCACGGCGGCGATCCGGACAAGATC
CTGGAGATATTGTCGATGATCGACGACGAGTGGCTGGACGACATCGCGAG
GGCGGCCAGGGGGGATCCGGTGCCGTCGCGATGTGGCCTCGCGCGAATAT
CGCCGTCATCTTCCCCGCCCGATAACAGCAGGCTAGAGTCGATGATCGAC
GACGAGTGGCTGGACGACATCGCGAGGGCGGCCAGGGGGGATCCGGTGCC
GTCGCGATGTGGCCTCGCGCGAATATCGCCGTCATCTTCCCCGCCCGATA
ACAGCAGGCTAGAGAGCAAGCACGCCAGTCCGACGGACTTGAACGGCCTT
CTCGGCGCACCGGCGGCGACGATGGCAGGAGGGGATCTGGAAGCGGCCGT
CCGCCTCGCCGCCAGCAAGCACGCCAGTCCGACGGACTTGAACGGCCTTC
TCGGCGCACCGGCGGCGACGATGGCAGGAGGGGATCTGGAAGCGGCCGTC
CGCCTCGCCGCC
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