mRNA_L-elsbetiae_contig16948.4659.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16948.4659.1
Unique NamemRNA_L-elsbetiae_contig16948.4659.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16948.4659.1 vs. uniprot
Match: A0A6H5L2X0_9PHAE (PI3K/PI4K catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2X0_9PHAE)

HSP 1 Score: 90.1 bits (222), Expect = 7.240e-18
Identity = 80/129 (62.02%), Postives = 81/129 (62.79%), Query Frame = 1 
Query:  103 EGEDESWEIVNAPAR-WEADAA---AXXXXXXXXXXXXXXXSRDPAADSSQSDSYSEYFAAMEAERLDLQLAAEAEEEEAKLDAEALLPPPRESADTTTVGGTSGXXXXXXXXXXXXXRRRPAGRHYFS 477
            EGEDESWEIVNAP R WEA AA       X       XXXX        SQSDSYSEY AAMEAERLDLQLAAEAEEEEAKLDAEALL P               XXXXXXXX      +RPAGRHYFS
Sbjct:  934 EGEDESWEIVNAPPRHWEAAAARGGGSAGXGVGVAGTXXXXXXXXGGPDSQSDSYSEYLAAMEAERLDLQLAAEAEEEEAKLDAEALLLP--------RGXXXXXXXXXXXXXGDCSSVKRPAGRHYFS 1054
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16948.4659.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2X0_9PHAE7.240e-1862.02PI3K/PI4K catalytic domain-containing protein n=1 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16948contigL-elsbetiae_contig16948:1241..2499 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size502
Cds size501
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815704.3897002-CDS-L-elsbetiae_contig16948:1240..14141622815704.3897002-CDS-L-elsbetiae_contig16948:1240..1414Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16948 1241..1414 +
1691683048.6249073-CDS-L-elsbetiae_contig16948:1240..14141691683048.6249073-CDS-L-elsbetiae_contig16948:1240..1414Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16948 1241..1414 +
1622815704.4008708-CDS-L-elsbetiae_contig16948:2171..24981622815704.4008708-CDS-L-elsbetiae_contig16948:2171..2498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16948 2172..2498 +
1691683048.641983-CDS-L-elsbetiae_contig16948:2171..24981691683048.641983-CDS-L-elsbetiae_contig16948:2171..2498Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16948 2172..2498 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16948.4659.1prot_L-elsbetiae_contig16948.4659.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16948 1241..2498 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16948.4659.1

>prot_L-elsbetiae_contig16948.4659.1 ID=prot_L-elsbetiae_contig16948.4659.1|Name=mRNA_L-elsbetiae_contig16948.4659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
TGSDTTTSAVAVLPQEASAAVAGVTAAAAPPPPREGEDESWEIVNAPARW
EADAAAAMAACAAAAAAASERSRDPAADSSQSDSYSEYFAAMEAERLDLQ
LAAEAEEEEAKLDAEALLPPPRESADTTTVGGTSGGSGSGGSGSGGSGRR
RPAGRHYFSPAAVMDAA
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mRNA from alignment at L-elsbetiae_contig16948:1241..2499+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16948.4659.1 ID=mRNA_L-elsbetiae_contig16948.4659.1|Name=mRNA_L-elsbetiae_contig16948.4659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1259bp|location=Sequence derived from alignment at L-elsbetiae_contig16948:1241..2499+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGGGAGCGACACCACCACTTCTGCCGTTGCCGTGCTACCGCAGGAGGC
TTCGGCGGCGGTAGCGGGAGTGACGGCGGCGGCGGCGCCACCGCCACCGC
GCGAGGGCGAAGACGAGTCGTGGGAGATCGTGAACGCTCCTGCGCGGTGG
GAGGCCGATGCTGCTGCTGCCATGGTGAGTGGGTGAAGTGAGTGAGACAA
AAGAGGAGGACTCTTGTCGTCGCTTGCGCATGTTTAGTGCTGTTTTCCAT
CCGCGTACTGTCCCAGAGGGTCTCCTCTCACTCAAGCGGTTTCGTCTTGA
CATACATGCATGCATGCATACATACATACATACATACATACATACATACA
TACATACATACATACATACATACATACATACATACACCATTCCCGCAAGG
TGTATAATATCAGGCCGGGACTCAGGACTGAGGTACAAACAGACAGTGCG
AGGGGAGAGCAAAACTGCTTCGCACGCGTACCCCCCCCCCCCCCCCCCCC
ACCCCCACCAACACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCAAGTT
TATCCCGGCGTGTGGTTCCCGACATGAGCATTCTGTTTTACCACCTTGTC
GGTGTGGCACAAAGCCTGAGGTGAGAGAGTTTTACCGCCGACGTAAACCG
AGTAAAACAAGATATCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
TCTCCTTCCAACACCCCCCCCCCCCCCCCCCCCCCCCCCCACACNNNNNN
NNNNGACACAAACACGAAGGGCAGAGGTTGCTACCGCCGACCAAAACCCA
GTACTCCAAACAATCCCCCCCCCCCCCTCCCCTCCCCTCCCCTTTTTTTT
CTCTTTCCGGTCCCCACCCACCCACACGCGCTGGCGGAAATAAATGTCTT
GCTCGCTCGCTCGCGTGTTTCGTCGACAAAGGCCGCTTGCGCGGCCGCCG
CCGCCGCCGCCTCCGAGAGAAGCAGAGACCCCGCCGCCGACAGCAGCCAA
AGCGACAGCTACAGCGAGTATTTCGCCGCCATGGAAGCCGAGCGGCTCGA
CCTCCAGCTCGCCGCCGAGGCCGAGGAGGAGGAGGCAAAGCTGGACGCGG
AGGCATTGCTGCCGCCGCCCCGGGAGAGCGCCGATACTACGACGGTAGGC
GGGACAAGCGGCGGTAGCGGCAGCGGCGGTAGCGGCAGCGGCGGTAGCGG
CAGGAGGAGACCTGCCGGGCGCCACTACTTTTCCCCGGCCGCCGTGATGG
ACGCGGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16948:1241..2499+

>mRNA_L-elsbetiae_contig16948.4659.1 ID=mRNA_L-elsbetiae_contig16948.4659.1|Name=mRNA_L-elsbetiae_contig16948.4659.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig16948:1241..2499+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGGGAGCGACACCACCACTTCTGCCGTTGCCGTGCTACCGCAGGAGGC
TTCGGCGGCGGTAGCGGGAGTGACGGCGGCGGCGGCGCCACCGCCACCGC
GCGAGGGCGAAGACGAGTCGTGGGAGATCGTGAACGCTCCTGCGCGGTGG
GAGGCCGATGCTGCTGCTGCCATGACCGGGAGCGACACCACCACTTCTGC
CGTTGCCGTGCTACCGCAGGAGGCTTCGGCGGCGGTAGCGGGAGTGACGG
CGGCGGCGGCGCCACCGCCACCGCGCGAGGGCGAAGACGAGTCGTGGGAG
ATCGTGAACGCTCCTGCGCGGTGGGAGGCCGATGCTGCTGCTGCCATGGC
CGCTTGCGCGGCCGCCGCCGCCGCCGCCTCCGAGAGAAGCAGAGACCCCG
CCGCCGACAGCAGCCAAAGCGACAGCTACAGCGAGTATTTCGCCGCCATG
GAAGCCGAGCGGCTCGACCTCCAGCTCGCCGCCGAGGCCGAGGAGGAGGA
GGCAAAGCTGGACGCGGAGGCATTGCTGCCGCCGCCCCGGGAGAGCGCCG
ATACTACGACGGTAGGCGGGACAAGCGGCGGTAGCGGCAGCGGCGGTAGC
GGCAGCGGCGGTAGCGGCAGGAGGAGACCTGCCGGGCGCCACTACTTTTC
CCCGGCCGCCGTGATGGACGCGGCGGCCGCTTGCGCGGCCGCCGCCGCCG
CCGCCTCCGAGAGAAGCAGAGACCCCGCCGCCGACAGCAGCCAAAGCGAC
AGCTACAGCGAGTATTTCGCCGCCATGGAAGCCGAGCGGCTCGACCTCCA
GCTCGCCGCCGAGGCCGAGGAGGAGGAGGCAAAGCTGGACGCGGAGGCAT
TGCTGCCGCCGCCCCGGGAGAGCGCCGATACTACGACGGTAGGCGGGACA
AGCGGCGGTAGCGGCAGCGGCGGTAGCGGCAGCGGCGGTAGCGGCAGGAG
GAGACCTGCCGGGCGCCACTACTTTTCCCCGGCCGCCGTGATGGACGCGG
CG
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