mRNA_L-elsbetiae_contig16939.4652.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16939.4652.1
Unique NamemRNA_L-elsbetiae_contig16939.4652.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16939.4652.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16939contigL-elsbetiae_contig16939:2360..2896 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size537
Cds size330
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16939.4652.1prot_L-elsbetiae_contig16939.4652.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16939 2429..2758 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.6184676-UTR-L-elsbetiae_contig16939:2359..24281622815703.6184676-UTR-L-elsbetiae_contig16939:2359..2428Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16939 2360..2428 +
1691683048.3212829-UTR-L-elsbetiae_contig16939:2359..24281691683048.3212829-UTR-L-elsbetiae_contig16939:2359..2428Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16939 2360..2428 +
1622815703.6423445-UTR-L-elsbetiae_contig16939:2758..28961622815703.6423445-UTR-L-elsbetiae_contig16939:2758..2896Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16939 2759..2896 +
1691683048.3450465-UTR-L-elsbetiae_contig16939:2758..28961691683048.3450465-UTR-L-elsbetiae_contig16939:2758..2896Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16939 2759..2896 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815703.6292236-CDS-L-elsbetiae_contig16939:2428..27581622815703.6292236-CDS-L-elsbetiae_contig16939:2428..2758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16939 2429..2758 +
1691683048.3315713-CDS-L-elsbetiae_contig16939:2428..27581691683048.3315713-CDS-L-elsbetiae_contig16939:2428..2758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16939 2429..2758 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16939.4652.1

>prot_L-elsbetiae_contig16939.4652.1 ID=prot_L-elsbetiae_contig16939.4652.1|Name=mRNA_L-elsbetiae_contig16939.4652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=110bp
MSMSVRHTDETGLSMGRLCYPRGTGTHDGGPSRPSVRASGWLAVLTRLCR
LHRARRRKPIRGVPLEAYYAECPWSLLLTEPPWCQTANRTSHAPLTIEQA
SMLLSNSYT*
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mRNA from alignment at L-elsbetiae_contig16939:2360..2896+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16939.4652.1 ID=mRNA_L-elsbetiae_contig16939.4652.1|Name=mRNA_L-elsbetiae_contig16939.4652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=537bp|location=Sequence derived from alignment at L-elsbetiae_contig16939:2360..2896+ (Laminarionema elsbetiae ELsaHSoW15)
GCCGGGCTTGCGACGCCTATTCAGTGCAAGTACATAACGTGCGGGCAGGG
ATGCCGAGCTTCAGAAGGAATGTCCATGTCTGTGCGTCACACAGACGAGA
CGGGGCTTTCGATGGGACGCCTGTGCTACCCACGCGGCACGGGAACTCAC
GACGGTGGGCCATCGAGGCCCAGCGTGCGTGCAAGCGGGTGGTTGGCAGT
ATTGACCCGGCTTTGCAGGCTCCACCGCGCGCGTCGAAGGAAGCCTATAC
GCGGAGTGCCCCTGGAAGCCTACTACGCGGAGTGCCCCTGGTCTCTCTTG
CTGACAGAGCCCCCCTGGTGTCAGACGGCGAACCGGACAAGCCACGCACC
GCTCACCATTGAACAAGCCAGCATGCTTCTCAGTAACAGTTATACTTGAA
GCATTTCGCTATTTTGTTCGCCAAACCCTAGCTCCGCGAAGGCTTATTCA
GGGCCAGCGCATCACCTGGACGTGAGGAGACCACAGAGCGCCCCGAACAC
CCAAAGCACTACAGCACCAAAAACTCATAAATTGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16939:2360..2896+

>mRNA_L-elsbetiae_contig16939.4652.1 ID=mRNA_L-elsbetiae_contig16939.4652.1|Name=mRNA_L-elsbetiae_contig16939.4652.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=660bp|location=Sequence derived from alignment at L-elsbetiae_contig16939:2360..2896+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTCCATGTCTGTGCGTCACACAGACGAGACGGGGCTTTCGATGGGACG
CCTGTGCTACCCACGCGGCACGGGAACTCACGACGGTGGGCCATCGAGGC
CCAGCGTGCGTGCAAGCGGGTGGTTGGCAGTATTGACCCGGCTTTGCAGG
CTCCACCGCGCGCGTCGAAGGAAGCCTATACGCGGAGTGCCCCTGGAAGC
CTACTACGCGGAGTGCCCCTGGTCTCTCTTGCTGACAGAGCCCCCCTGGT
GTCAGACGGCGAACCGGACAAGCCACGCACCGCTCACCATTGAACAAGCC
AGCATGCTTCTCAGTAACAGTTATACTTGAATGTCCATGTCTGTGCGTCA
CACAGACGAGACGGGGCTTTCGATGGGACGCCTGTGCTACCCACGCGGCA
CGGGAACTCACGACGGTGGGCCATCGAGGCCCAGCGTGCGTGCAAGCGGG
TGGTTGGCAGTATTGACCCGGCTTTGCAGGCTCCACCGCGCGCGTCGAAG
GAAGCCTATACGCGGAGTGCCCCTGGAAGCCTACTACGCGGAGTGCCCCT
GGTCTCTCTTGCTGACAGAGCCCCCCTGGTGTCAGACGGCGAACCGGACA
AGCCACGCACCGCTCACCATTGAACAAGCCAGCATGCTTCTCAGTAACAG
TTATACTTGA
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