mRNA_L-elsbetiae_contig1692.4638.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1692.4638.1
Unique NamemRNA_L-elsbetiae_contig1692.4638.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1692.4638.1 vs. uniprot
Match: A0A6H5KJG0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJG0_9PHAE)

HSP 1 Score: 189 bits (480), Expect = 9.580e-55
Identity = 111/203 (54.68%), Postives = 129/203 (63.55%), Query Frame = 1 
Query:   67 AYDACFERLLRSGCVAGLALLDSAHGRPLYENRVDDLLPR--------------------------NKDSG-----------GRGRYD-LVSAEEGRRLVDALKGLTDD--GLCRQDR---LTCMGVPFRVFGGTPLGIYAVGPGRQVGLVGRSLAGVGYLVVFYRRPHLPQQVVPCVESFVDGFWTDVQGFGLR--LPPADT 540
            +YDA F+ L+ SGC+AGLALLD++ GRPLYENR+DD LPR                          NK+ G           G G+ D LVS+ EG+RLV A+K LTDD   +CR+     LTCMGVPFRVFGGTPLGIYAVGPGR+VGLV R+L  VG+LVV YRRPHLPQQVV  VE FVD FW   QG  +R  LPP  T
Sbjct:   85 SYDALFQGLVGSGCIAGLALLDASRGRPLYENRLDDRLPRPPXXXXXXXXXXXXXXXXXXXXXXEDNKNDGKEVVGARGGGEGPGQRDGLVSSSEGQRLVAAVKSLTDDDDAICRKQEEQPLTCMGVPFRVFGGTPLGIYAVGPGRRVGLVVRALPRVGFLVVVYRRPHLPQQVVGEVEKFVDDFWAGTQGRAVRSPLPPPPT 287
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1692.4638.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KJG0_9PHAE9.580e-5554.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1692contigL-elsbetiae_contig1692:5711..11441 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-16_002620.1
Exons4
Model size970
Cds size582
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1692.4638.1prot_L-elsbetiae_contig1692.4638.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1692 6078..11420 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.9453788-UTR-L-elsbetiae_contig1692:5710..60771622815702.9453788-UTR-L-elsbetiae_contig1692:5710..6077Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1692 5711..6077 -
1691683047.9262109-UTR-L-elsbetiae_contig1692:5710..60771691683047.9262109-UTR-L-elsbetiae_contig1692:5710..6077Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1692 5711..6077 -
1622815703.0072198-UTR-L-elsbetiae_contig1692:11420..114411622815703.0072198-UTR-L-elsbetiae_contig1692:11420..11441Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1692 11421..11441 -
1691683047.9760418-UTR-L-elsbetiae_contig1692:11420..114411691683047.9760418-UTR-L-elsbetiae_contig1692:11420..11441Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1692 11421..11441 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.9589748-CDS-L-elsbetiae_contig1692:6077..62461622815702.9589748-CDS-L-elsbetiae_contig1692:6077..6246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1692 6078..6246 -
1691683047.9365094-CDS-L-elsbetiae_contig1692:6077..62461691683047.9365094-CDS-L-elsbetiae_contig1692:6077..6246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1692 6078..6246 -
1622815702.9695935-CDS-L-elsbetiae_contig1692:7166..73511622815702.9695935-CDS-L-elsbetiae_contig1692:7166..7351Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1692 7167..7351 -
1691683047.9456906-CDS-L-elsbetiae_contig1692:7166..73511691683047.9456906-CDS-L-elsbetiae_contig1692:7166..7351Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1692 7167..7351 -
1622815702.979326-CDS-L-elsbetiae_contig1692:8134..83411622815702.979326-CDS-L-elsbetiae_contig1692:8134..8341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1692 8135..8341 -
1691683047.9548306-CDS-L-elsbetiae_contig1692:8134..83411691683047.9548306-CDS-L-elsbetiae_contig1692:8134..8341Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1692 8135..8341 -
1622815702.9953303-CDS-L-elsbetiae_contig1692:11399..114201622815702.9953303-CDS-L-elsbetiae_contig1692:11399..11420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1692 11400..11420 -
1691683047.9654806-CDS-L-elsbetiae_contig1692:11399..114201691683047.9654806-CDS-L-elsbetiae_contig1692:11399..11420Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1692 11400..11420 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1692.4638.1

>prot_L-elsbetiae_contig1692.4638.1 ID=prot_L-elsbetiae_contig1692.4638.1|Name=mRNA_L-elsbetiae_contig1692.4638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=194bp
MMDTTHEVPGSPRRKAYDACFERLLRSGCVAGLALLDSAHGRPLYENRVD
DLLPRNKDSGGRGRYDLVSAEEGRRLVDALKGLTDDGLCRQDRLTCMGVP
FRVFGGTPLGIYAVGPGRQVGLVGRSLAGVGYLVVFYRRPHLPQQVVPCV
ESFVDGFWTDVQGFGLRLPPADTAPPPPPPPPSTSGGRTAAGL*
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mRNA from alignment at L-elsbetiae_contig1692:5711..11441-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1692.4638.1 ID=mRNA_L-elsbetiae_contig1692.4638.1|Name=mRNA_L-elsbetiae_contig1692.4638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5731bp|location=Sequence derived from alignment at L-elsbetiae_contig1692:5711..11441- (Laminarionema elsbetiae ELsaHSoW15)
GGAAACGAGAGGGAGCAAAGCATGATGGATACTACTCACGAGGTAGGTAT
GCCCACCGAGGTCGTGTTATGTGCTAGGATGAAAATACTGACGGACCTTT
GCAGTAGCCAACTGGAGAGCGATGCACATACATTTTCAATTTTTAAAAAC
TCTGCATGACGCCAGACGAGATCTTACGTAGATAAATGTTGCGTGTGTGT
GTCACTGGAGAAACATTTTGTGGGGGCGTACTCTTGTGATTTTATTCTCT
AAGCATCGCCTGCGCTCACTTAGGGACCAAATACCGCATTTCAATCTCCA
GTGTTGTTCGTTGGGGGGGCCGGCAGATATTTACCTAGAAGGGGCTCGGC
AGATGTGATACGGTTCGCAGAACTCCTCCATATACCACTGGGATACAGAC
TAGACCGCTCGGGGCACGTGCCTTGGCAGAGATATCTCGGCTTGGGGAGC
TCGAACACAGATTCTGACGGTTCGACTACTGAGCAGTAGGCAGCTGTAGG
AGGAAATACCGCTGCTGTGGTCGCGAACCTTTGTTGGTCAATTGATATCA
GCCCTCGCGAAAATCGCTGCCATAGAATGTGTGCCGATACCACGCAAGAT
AACACACCTCAAACAACCACTCAAGATAACACCTCCCCTCGGAGAGAGAA
CCTGGTTTCCACTTGGAAATTGTGTGAAAATACGCTCCCACGCGATCACC
GTTTTCTTACGCCACCGAGCTCGAACACAGTAATGGACGGGTGATACCGA
AAGATGACGACAGTGGTGTATGTCTCCGATGCCCGTTTTCAGTCGTAGAA
AATTTGGTCAATTGATTGACGCCCATCAAAACGCAGCGATGCAGCCAGTC
AGCACCGGAATTTCGTGTGTCGTTTGACCCTCGTACCAGGCACAGGCCGC
ATAGAAATAGGCTAAACCTAACCCAGTACCACCACAGTGCATGACACTAT
GGGTTTCAGTCTGTTTTGATTGCTTAGATTTAGCTGGATGGGCTGCAGCG
ACTATCTGAGGTGCCAGCGGAGTACCCAGGGATGCTCGAAGGAGTTTCCC
AACTCTCAAAAACGCCTGATTTATCTCTCAGGGTATCTCTGGAAAATGTT
TTTCTGCCTCTCGAGCCCCACACCCCTCCGTTTTCCTTGCTTTCTTCAGC
GATACTGATCTGCCTAGACATTAGCTACCGGAGAGTGTCCTCAGAAGCCA
AACCTGTGTTCTACAGCTTTCGCAGCTCCACGAAAGGTCGATAAATTCCA
TTGCGGGCCCCCCAAGCGGCACACCACTGTTTCACCAAAGGCTAAGTAAA
ACAAATCACAACCATCGTCCGCCGGGTGCCCGGGGCTCCGTGACATGTCA
ATATGTACACGGCCCAGCAGGTACACCCTGCCGACCACACGCAGTAGGGC
TCGTGGATTATAATACCCCACCTACACCATCAAACTGGATTACGCCGAAA
TCGGAGGGTGGGCGGTGGGCGGGGGGCGGCAGCTACAATATGATACCCTG
ACGGGGGAAGGCGGGTGGTGGTATGTAGCCCCCAACGGATGCCCCCCTTT
ACCGTCTACGAGGGTCTGGAATATATACATATTTAAAGAGGCACTTGTTT
CGCTCCTTTACATCGAGTTCTGGCCGCAGAGTGCCGTGTTGGTGGTGAGG
AAATAACCAAATAACGTGGTCTGTAGCTCCTGTACTTATCATCTAGGGTG
TGGGAAAAATAACGAAGCGAATCGATGCTCTAGCCGCTGCGTGGGGATGA
ATCACACCGATGACAAGTTCGTCGGGGACTCGCAGACAAACATCACGCGC
ATTAAAGACCCCCCCCACCAAAATCCCCCGCCGTCTTCTGGCTTGCTGAC
ACCACTGCGCCAGTCCTAGGAGCTCACATACTCCATCTGAGACGCAACAA
ACATTAGACCATCCGAGCTAAATACCTGCTCATAGCTAGGGTCGGTGCAA
GTTTTAGGCCCCGGATCGCTGTGTGAGTGTCGAGTTAGAGCTCACTTCGA
ACACACGTCGGTGCGCTCGGCTAGGCCAGCAGCAGCAGACGGCAGTAGCA
AGAGTTAGTGCCCTGCAAAGAGTCAGCTACTGTCAATGAGTGCGCTGCAC
AACTTAGACTCTGCTCTTGCCGATGTGCATGGTGTTGCGACTGGTCTCTT
TAGGGGTGGATCAAGAAGCTACGTTTGGTGTAGGAATCGAGCTCGTCTGT
CTCGCAGCTGGCTCTCTTCTTCGACTCTCCCTCTCTCTTCCCTATCCGAG
TTGTGCGATGCCACGTCTAACGCTGTGCAAAAACTACCACCTAGATTTCT
GACCCGCTCTGTAGTCACACATCTCTACTACACAGCCTCAAAGTTGGGTT
TCTGATCACTTCCTCCAAGCTGAGAAATCGGCTACTTTATGCGTGGGCAT
ACTGAGGCCCTGTGCCTTTTTGCCGTGACAGAATGCGCCTTCCTTGAAAT
CCTCCCGCGTATGCGCCCCCTTGAGTTTTAGTTCGACCAATAATGTGTTG
TAAAAACAATACTAGACCTACAGCATGAAGGCCCACAATAAAATAGAAAT
GAGTTGGACTGCTTTGGTTTTGTTTTGTGATGTCGGTGCCGCCCCCCGTC
CATGCTCGCGCAACCTGGGTAACCCCGACGGCTCTTCCATGCCAATGGCA
CCGGGCCCCCAAGCATGAGCCCCCTTGCTCCACAAGCCCTCCTCTCCTAT
GGTAGCGGAGACTTTGCTGCCGTAATTTAATCTCACAGAGCGGCCGAAAA
CAGCAGTCGCGTATGTAGCCAGTCGAGATTACCACCCAACGAGCGGGGCA
CCGTGTCAGCGGCCTCGAGGTCTAGGTATGCACGTATGTACCGTGAGCTG
ATATCGAGAGACGATGCCCCCCAGCGAGGCGGGAGCCTTTGATTGGCCGC
GGGGAGGTGGCGTCACAAGCGATGGTCGAGCAATAATGTTAAATGTTGTG
CAGAATATCGTAGAGCGCGTGACACACACGCACGCACGCACGCACGCACG
CACGAGAAACAGCGGGCAAGACACGAAGGAAAAAAGCCAACCAGATGCAC
AGCAGCCCTATTGCCCCCCCTCCCTCCCTCCCCCCGAAAAAAAAAAAAAG
GTGCCGGGTTCTCCGAGAAGAAAAGCCTACGACGCGTGCTTTGAGAGACT
CCTCCGCAGCGGGTGCGTCGCGGGGCTGGCCCTCCTGGACTCCGCGCACG
GACGCCCCCTCTACGAAAATCGGGTGGACGACCTGCTGCCTCGGAACAAG
GACAGCGGTGGGCGGGGCCGCTACGACTTGGTTTCTGCGGAAGAGGGGCG
GCGCTTGGTGGGTGGCTGCACGAGTATCAGTCTCATCGCAGGGGGGGGGC
AGGGGAGGCGCTGACGGCTGGCTGCCTTTTTGGGCGGTCTGTTGTGAACT
GTTTTTGCTGGTGGGTTGATCCCGGAAACGATGAGATGCTGGCGCCGGTG
CCAATTTAGGCCTCCTTATGCTGAACGTGTTGACGCGCAGCCACTTCTTC
CGCTATAAACTACCGCCGGAAGATTCCTAAAATTGGACGGATGGATCGAT
ACATAGTACCCGCCTCGTTCCGATGGCAGAGGAGAAGACGAGATTCTTCC
TGCGGGCTCGTGGGTGGCCGACGGTGATGGCGATGGAGATGTTCAGTCCA
AACAGCAGTCTAGAGTTTCGAATACATGATGGCTGTTTACGCAGAACATT
TGCCAGGTCCATGAAGCACAACGCCTTGCATTTATCTTGCCCTTCTTCCC
CCTCCCTGCCGACGGGCCAACACGGCACAACGACCTTGTACAGCCTACGG
CTTCTCTACAATACGGCCTAAGGATTGGATGCGTTGGGACGGAATGGAAA
ATCACGCTTGTTCTCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGGGGGCCCCCA
CGAGCCNNNNNNNNNNCCGGCCAAAGGGTTGGGTGGGTTGGGACGGAGTG
GAAAGACCCGCTTTTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCCCC
CCCCTGAAACACGCACTCGCTCGCAACCTATCTCGCACAGGTGGATGCCC
TGAAAGGCTTAACGGACGACGGCCTCTGCCGGCAAGACCGGCTGACGTGT
ATGGGGGTGCCGTTCCGAGTCTTCGGCGGCACGCCGCTCGGTATCTACGC
GGTGGGCCCCGGCAGGCAGGTCGGGCTGGTCGGGCGGAGTCTTGCGGGGG
TGGGGTACCTGGTGGTCTTCTACAGGTGCGGTGATGTGTGTGTGTATGTG
GCGTTTCTACAGGTGTGCGGTGCTGTGTGCGGTGCGGTACGGTGCGGTAC
GGTGCGTCAGGCTTTGTTGTAATGTTCATTTTTTCGCGGGGGCTTCGCGG
CGCTTGCCGGTAGAGGGGGTGGCGGAGAGAGGCCGGAATGTTTCATGCCT
GGGCCTCCTGCCGCGTTCTTGTGCGGCTCGAGAGGGGGCGTCGAACGCTC
GCCCCCGTGTCATGGTGGGTACTTGCCGCCGTTATTTTTTTAGGAAGCTG
CCGCCGCAGCAGCGCCCGGAATGCAACCCCGCGTGTTGGGCCAGGCGAGG
AACCGCCCTCCGTGCGCGAAAATGACGCGCAAAGCGGGGGTGGCAGTCAC
CGTGGCCGGTCAGACCCGCGGAGGGTTGGTTCGCCGTGCCCCCGGAGTCG
ACTCTATTGAATTCGCCCCCCAGCGGAGAAATAAACCGAGCCGTTCAAAC
CCTGGAAAATCTATCAACCAATCTCAAGCCTGTCAACCACGAACGGAATG
CGGTTCGCACCGTGGAACACATGGCACGAAAAAAGATGAAGCCGTCCGCT
CGGTATTGTGTAGACGTTTGCTGGGGGAATCGGTGCGAGTCAGCAGGCGC
CTGCCTCACGACCGGTGGTATGGGGGCATTGCCTTTCCTGCCTGCCGATT
TCTCAGCGAGGGTTACGTAGGTACGAGGTATCTATGTACGTACCACGGGC
GTGTACACGGGGAGGACAGCCAATAATGTGGACTTTGATTCGCCCCCGCG
CCCTCCTGCGGCCCAACTTTTTCTGTCATAGATAGAGCGCCGCTGCCGCG
AGTGCTGTTCCCTAAGAAAGCAGCGAGACAGACTCCCTCGCCCCCCTTGC
TGGATACTCTCGGCATGTGCTGTGGCGGTCTTCCTTGCGGAACAGGAGGC
CGCACCTGCCTCAGCAGGTGGTGCCGTGCGTGGAGAGCTTCGTGGATGGT
TTCTGGACTGACGTTCAAGGTTTTGGCCTCCGATTGCCACCAGCAGACAC
CGCGCCGCCGCCGCCACCACCACCGCCATCAACGTCGGGGGGGAGAACGG
CGGCTGGGTTGTAGCACTAAATGTAGTCTGTTAGATATGTTAGTCTGCTT
GTTTCGAACGTGTTGAGACCATCGCAATTCAAAAGATAGATGAAGGATAC
CGCTTGGCACAGTAGTCATGGAGCAGCAGCACACGCACGCGCGTGCGTTT
TTTTTTATCCTTGGGCGGGGAACAACAGCTGCCAGGCGTACTTTCGCTTT
TTTCTATTTTTGAGAAAAAAAAGTCGTTGCTTTATTTGGGGGTTTCGTAG
TGGCGCTTTAAAAAAATAAATAAGTACTCAGATTTAACTCTAAGAGCATC
GAGTAGCCTGTGCTGGACTTTTTTCCTGCCAAGTGAAGAAAAAATGTGAC
GTCAGGCCGGGATCGCTCTGATCTCAAAAGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1692:5711..11441-

>mRNA_L-elsbetiae_contig1692.4638.1 ID=mRNA_L-elsbetiae_contig1692.4638.1|Name=mRNA_L-elsbetiae_contig1692.4638.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1164bp|location=Sequence derived from alignment at L-elsbetiae_contig1692:5711..11441- (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGATACTACTCACGAGATGATGGATACTACTCACGAGGTGCCGGG
TTCTCCGAGAAGAAAAGCCTACGACGCGTGCTTTGAGAGACTCCTCCGCA
GCGGGTGCGTCGCGGGGCTGGCCCTCCTGGACTCCGCGCACGGACGCCCC
CTCTACGAAAATCGGGTGGACGACCTGCTGCCTCGGAACAAGGACAGCGG
TGGGCGGGGCCGCTACGACTTGGTTTCTGCGGAAGAGGGGCGGCGCTTGG
TGCCGGGTTCTCCGAGAAGAAAAGCCTACGACGCGTGCTTTGAGAGACTC
CTCCGCAGCGGGTGCGTCGCGGGGCTGGCCCTCCTGGACTCCGCGCACGG
ACGCCCCCTCTACGAAAATCGGGTGGACGACCTGCTGCCTCGGAACAAGG
ACAGCGGTGGGCGGGGCCGCTACGACTTGGTTTCTGCGGAAGAGGGGCGG
CGCTTGGTGGATGCCCTGAAAGGCTTAACGGACGACGGCCTCTGCCGGCA
AGACCGGCTGACGTGTATGGGGGTGCCGTTCCGAGTCTTCGGCGGCACGC
CGCTCGGTATCTACGCGGTGGGCCCCGGCAGGCAGGTCGGGCTGGTCGGG
CGGAGTCTTGCGGGGGTGGGGTACCTGGTGGTCTTCTACAGGTGGATGCC
CTGAAAGGCTTAACGGACGACGGCCTCTGCCGGCAAGACCGGCTGACGTG
TATGGGGGTGCCGTTCCGAGTCTTCGGCGGCACGCCGCTCGGTATCTACG
CGGTGGGCCCCGGCAGGCAGGTCGGGCTGGTCGGGCGGAGTCTTGCGGGG
GTGGGGTACCTGGTGGTCTTCTACAGGAGGCCGCACCTGCCTCAGCAGGT
GGTGCCGTGCGTGGAGAGCTTCGTGGATGGTTTCTGGACTGACGTTCAAG
GTTTTGGCCTCCGATTGCCACCAGCAGACACCGCGCCGCCGCCGCCACCA
CCACCGCCATCAACGTCGGGGGGGAGAACGGCGGCTGGGTTGTAGGAGGC
CGCACCTGCCTCAGCAGGTGGTGCCGTGCGTGGAGAGCTTCGTGGATGGT
TTCTGGACTGACGTTCAAGGTTTTGGCCTCCGATTGCCACCAGCAGACAC
CGCGCCGCCGCCGCCACCACCACCGCCATCAACGTCGGGGGGGAGAACGG
CGGCTGGGTTGTAG
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