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Homology
BLAST of mRNA_L-elsbetiae_contig1692.4639.1 vs. uniprot
Match: D8LK93_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK93_ECTSI) HSP 1 Score: 143 bits (360), Expect = 1.830e-38 Identity = 72/94 (76.60%), Postives = 77/94 (81.91%), Query Frame = 1
Query: 67 ATAEQYPSYIRRKSAGMNG--EDDGGERETEKGYVGGDRVRLLVGSFNVGNSPLADLAPWLPYGGKGFDLIVVGLQESTYRAPRAARDS-PFQR 339
AT E YPSY+R +G + +G ERETE+GY GGDRVRLLVGSFNVGNSPL DLAPWLPYGGKGFDLIVVGLQESTYR PR ARDS PFQR
Sbjct: 56 ATVELYPSYVRPPPGADDGGKQQEGQERETERGYEGGDRVRLLVGSFNVGNSPLTDLAPWLPYGGKGFDLIVVGLQESTYRPPRGARDSSPFQR 149
BLAST of mRNA_L-elsbetiae_contig1692.4639.1 vs. uniprot
Match: A0A7S3YA27_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YA27_HETAK) HSP 1 Score: 68.6 bits (166), Expect = 5.100e-11 Identity = 24/48 (50.00%), Postives = 40/48 (83.33%), Query Frame = 1
Query: 160 YVGGDRVRLLVGSFNVGNSPLADLAPWLPYGGKGFDLIVVGLQESTYR 303
Y+GG ++LL+G+FN+GN+ + ++ WLPY G+G+D+I +GLQEST++
Sbjct: 29 YLGGSEIQLLIGTFNMGNAEIENIGEWLPYEGEGYDVIAIGLQESTFK 76
BLAST of mRNA_L-elsbetiae_contig1692.4639.1 vs. uniprot
Match: A0A7S1CC49_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CC49_9STRA) HSP 1 Score: 55.5 bits (132), Expect = 1.300e-6 Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1
Query: 178 VRLLVGSFNVGNS-PLADLAPWLPYGGKGFDLIVVGLQESTYR 303
+R+ V ++NVGN P AD APW+P GG D+IVVGLQESTY+
Sbjct: 53 LRVHVCTWNVGNKMPRADFAPWIPAGGGDHDVIVVGLQESTYK 95
BLAST of mRNA_L-elsbetiae_contig1692.4639.1 vs. uniprot
Match: A0A485L4S4_9STRA (Aste57867_15572 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L4S4_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 2.930e-6 Identity = 34/94 (36.17%), Postives = 48/94 (51.06%), Query Frame = 1
Query: 70 TAEQYPSYIRRKSAGMNGEDDGGERETEKGYVGGDRVRLLVGSFNVGN----SPLADLAPWLPYGGKGFDLIVVGLQESTYRAPRAARDSPFQR 339
T + I K++ G+ +G ER ++L G++NVGN S D+ W+P GG +D+I VGLQESTY+ A DSP R
Sbjct: 17 TPHPFLQKIAEKTSTPGGKPEGQERT----------LKLFTGTWNVGNKMPPSTSQDINCWIPEGGGDYDIIAVGLQESTYKKKSNAPDSPGHR 100
BLAST of mRNA_L-elsbetiae_contig1692.4639.1 vs. uniprot
Match: A0A1V9ZWR6_9STRA (Phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9ZWR6_9STRA) HSP 1 Score: 56.6 bits (135), Expect = 3.870e-6 Identity = 24/43 (55.81%), Postives = 34/43 (79.07%), Query Frame = 1
Query: 178 VRLLVGSFNVGNS-PLADLAPWLPYGGKGFDLIVVGLQESTYR 303
+++L+GS+NVGN P + PWLP GG GFD+I VGLQES+++
Sbjct: 30 LQVLIGSWNVGNKMPPTSVDPWLPQGGGGFDVIAVGLQESSFK 72
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | hypothetical protein |
Ec32 ortholog | Ec-16_002530.1 |
Exons | 3 |
Model size | 550 |
Cds size | 549 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815702.837406-CDS-L-elsbetiae_contig1692:11663..11860 | 1622815702.837406-CDS-L-elsbetiae_contig1692:11663..11860 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1692 11664..11860 + |
1691683047.8687515-CDS-L-elsbetiae_contig1692:11663..11860 | 1691683047.8687515-CDS-L-elsbetiae_contig1692:11663..11860 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1692 11664..11860 + |
1622815702.852634-CDS-L-elsbetiae_contig1692:16293..16399 | 1622815702.852634-CDS-L-elsbetiae_contig1692:16293..16399 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1692 16294..16399 + |
1691683047.8786902-CDS-L-elsbetiae_contig1692:16293..16399 | 1691683047.8786902-CDS-L-elsbetiae_contig1692:16293..16399 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1692 16294..16399 + |
1622815702.8621817-CDS-L-elsbetiae_contig1692:17510..17756 | 1622815702.8621817-CDS-L-elsbetiae_contig1692:17510..17756 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1692 17511..17756 + |
1691683047.8903334-CDS-L-elsbetiae_contig1692:17510..17756 | 1691683047.8903334-CDS-L-elsbetiae_contig1692:17510..17756 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1692 17511..17756 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1692.4639.1 >prot_L-elsbetiae_contig1692.4639.1 ID=prot_L-elsbetiae_contig1692.4639.1|Name=mRNA_L-elsbetiae_contig1692.4639.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=183bp
MSASKHGTDLPSGTKLADVNTAATAEQYPSYIRRKSAGMNGEDDGGERET EKGYVGGDRVRLLVGSFNVGNSPLADLAPWLPYGGKGFDLIVVGLQESTY RAPRAARDSPFQRNSPFQRSFSLSPTNSLSPMKVGRSSPRWAVTTMQGEG PDDTPPPGTGLRGSSYSPPPVSVLPAGLSAHKR back to topmRNA from alignment at L-elsbetiae_contig1692:11664..17756+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1692.4639.1 ID=mRNA_L-elsbetiae_contig1692.4639.1|Name=mRNA_L-elsbetiae_contig1692.4639.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6093bp|location=Sequence derived from alignment at L-elsbetiae_contig1692:11664..17756+ (Laminarionema elsbetiae ELsaHSoW15) ATGAGCGCTTCGAAGCACGGCACCGACCTTCCCAGCGGAACAAAGCTGGC
CGATGTCAATACAGCTGCGACGGCAGAGCAGTATCCGTCCTACATCCGAC
GCAAGAGCGCGGGAATGAACGGGGAAGACGACGGGGGGGAGCGAGAGACA
GAGAAGGGATACGTCGGCGGGGATCGGGTCAGGCTGCTCGTCGGGAGGTA
GGCGGGGTTGACGTGCTAGTCGGGTACTGGCTGTGTGTCTCCAATAGTCC
ATCTATTTGGTGTTGTAACTGCGGAGATTTACAACTCCAACGGTATCATA
CATAGGAAGGCCGAGTCAGACGCACTGTATGTAGATGCACCCCCGGCGCT
GATCGAATCGATGAATGGGTGGTCATAATGTCTACACCCTGCACACGCAC
CAAGTACATTTTACTACTCGTACAATATTTACCCACGTTCTGTTTGGGAG
AGTCTACAACATAATTGTTCCTCCACTTCGCTAATCTCGGTGTAAGAAAA
CGAAAGGGGATGTGGGTGTGTTTCATCAGATCCACAAGGGAGATTCGCCT
GCACCCACGCCGCCTGCCCCGCAGGAGAGTATCATAATCTCCTTAGGTCA
TGTTCATGGTAAGGTGGGAACAATTGTGGTCCATCTAAGTGGTGTTGTGA
GAGGAGGCTCAGGTAAATAGTCGAGGCCTAAAGTGGCGAAGTGTATGTAT
CATGTTGAAGCACGAACTGCACAATTCGCCCCGAAGCACATAGCTCGTTA
AACATGTATGGTTGGTTGGAAATGGGCACTGTGGTTGGAATGTAAATACT
CCGGGTTGTGTTGTAGAAAAGTATTTCGAGAGGCGCAGGCTGAAGGAATC
CCGTGGAAGTAGACGGTTCTGTGCAGATGATTTTACTGCCCGCTGGTATG
CTCGTTCCCCTCTGACAAAAAACTCGCACGGGAGGCAGGCGACCAACGAT
AAGTACGCATCGCTTGGTGCTATTCTTGTGGGACACACTAACAAGACAAA
TCCACCACGTGTGTGCCCAGTTGGCAGGTACTTCATGGCTGTCGTCGCAG
TATTTTAGCATCACACCCCAGACGTTAGCACCACACCCCAGACGAACCAA
AAATCTTGTGCATACGTAATTACCGTTTCAATCGAAAATCAGAAGAATTG
AAAACCTCCGCACACCCTGTACAGCTACCGCTGATCGCTGTCGCTGTTAG
CTATGCAGAGCTGGCCAGGCAGTAGCTGTCTGTAGATCGCCGCTAACTGC
GCAGCCTTTAAACAATAGCTGTTGGTACACCGCTACTAGATAGCTGCCTG
CGCAGCTTCTTGAGGCAAAGCTGTCTGCAGCCGGCTAGCTGGCGCAGCTT
ATCGAAAACAAGAGCTGTCTGCCAGACAGCTGACCGCTATAGCAGCTGTA
CAGGGTGTGAAATTTTAAACTTACGAAGCGCTGGTTATCTCGACATGTCT
TGCACAAACCTGATTAATCCACGACGCGGGTCCATTTGGCAGTCAATAGC
TAAATATCGAAGTACAATAGTAGCACCACACCTCCGACGAAAGTACAATA
GTAATATTCTACTCATGAAGATACGCCCATCGAAAATCAGAACAATCGAA
CACGACAGTGTGGAAGGCCAGCTGCCACTTGGATATCTTGCTCTGGTACT
CATGAGGGAACCGACAATAAGTAGTATCAGTAAAATCTCTTGTTCTAACG
CCTCCTTCGCTGCCTCTACGTGTGTACCTACCATGAGAATACTCTGCCAC
AATAATCATAAATCTGGGAAATATTTTGAAATGATTTTTCTTCGTGGGCG
ACCACCCTCTCGTAGCTGTGCAATATATAAGCATGGCTTCGCAGTGCTTG
CTCCTCGGCTTCGCGGATGAGGCCGTCTCTGCAGAAGTATACCTGAGGCG
TCATGCCTGATTTGAACAGCGCCTGATGTTTGTTTCACACAGAGAGTTGT
CCTCCGTGCACGTGTGGTGAATTTGTACGTTGTCTTCGGGTAAATGTCCG
TGTGTGTGGAGGTCACGCTTATAAGGGGTATATAACATCCTACACGGTCC
GTCGAAGACGTTTGACCCTTTTCACATTTGGCGTCGCGAGGAGATGCTAG
TTTTCTTTCAGGAATGTAAAAGTCAAAGAACTTTTCTCTCCATGAATATA
ATGAAGAAACAATATGATGGGAGATCGAAACGAAAACGGTAATCGAACTG
CGGAACTCCTGAGACGTGGCGGACGTAGCGCACCAGTTGAACACGAAGAA
AACGTGTGGAAAAACACGCTCAGAGGATATGTGAAAAAGTGGGATAAAAA
CGCTTCGCCGCCAGTCGGTCGGGTTCCGGCTACCCTAAAAAGCCTTCCCT
TGCGTAGCAACCAAGAAGACGAGTCAAAAAAGGGGGGGGGCAATGTGGAG
GTGACCCTTATACAAGCTGGTTCAGATTGAACGCCCAAAATTCATTCCCC
GACTAATAACGAACGCAATACAGGCTCAATTTTGATGAAATCGGTATCGT
AGTGTTGCCTACGAGTGAGTCAACAAGGTGACATGTTCCTTTTTCGGATT
TTGGGCTTGGGTGCGAAGCTATAGGCGGAAATGTAGTCTCGGCCAATCAG
CGGCCTCCAAACTGTCTAGTACCAAAAATACGAATTTCCAAACCAATATG
CCGTTCAATCTCCACACTTTTTGTATCATGGCAATTGCGATCCTCTAGGG
AACCTAACAAAAAAAACTGTTTTGAAAACGGTTGTCCTGGCATCGAGTTA
TACCCAAAAATATGATATTTCGGTTACGACGACGCCAATATTTCCTGATG
ATATAGGACTAAGACCGTGGGGCCGGCGCCAACGGTTTCTTGCATATCTC
CCCGAAAAAAGATTCAATCAATCTCAAACTTGACATCGTGATGGATATTG
ACGCTGCAAATATGAAAAACAATATTCCGGGGTGTTCCGGTCGGTGGGTG
GGTCTGTACTGGCTTTCGGGGGTCTCGCCGGCCTCAGGACCCCCGATAGC
CAGTACAGAGCCCTGTTCGCAAAACAAAAACTTCCACGCGCTCCGCCGTC
CCACAAGAAACATTCGTACCAAGTTTGGTTGGATAAATAACTCAAAAGAC
TGACGCCGCAGGGTCGTCTGCCGTGAAAAAAACGTGAAAAATGTCCAAAG
CATACTTGAATCAAGTAATTAGGGGGGCACGCAGACTTTTTCACACTTCA
ACGCACGTTTTGGCATTTCCTCACGCCGTTTTTACAAGTTGGACCATGAA
ATTTTGCACAGATGTACTACGAGTGATGATGAAGAGCCGTCAGAGTGGGC
TTTTTTTATTTTTCATGTTGTTGGCTTTTTATTCACGGTCGCGGTCGACC
TATATGACAGGGGGGGGCGGATCCCGGATATCTCGACAACGAAAACCAAA
ATCAAAAAAGCCCACTCTCAGAGAGTTAGATAATGCCTTCCTGAACATGT
GTGCAAAATTTCGGGGTCTAACTCGAAAAAACAGCGTGAGGAATCTCCGG
GGAATAAATTTTGGGTATTCAATCTGAACCAGCTTGTAAGGGATATAAAC
CTCCTACAGTCCGTCGAAGACGTTTGACCCTTTTCACATCACATGTGCCA
AGAAATAATTAACGTTTGCTTGCTGTTGTAGTAGGGTGTACCACCGTCGT
GTAAGGCAGAAACAAAACAAGAGGGCAAGAGACAGCCCTGAGGGTGTCCG
CCTGTTCTTGATCCTCCGTGCGTGCTGGTTACCTCGTTGCGGAAACATGC
GTACACATGGCATGTCCCTTTTCACCGGTGGTTGCCATTGTACACAGGCT
CGTTATTGTTGTTGTTGTTGTGGTCTTATCACATTAGCTATCTAGTCCAA
AACATCCTTGGGGGCCCGTAGTCACAAAACAAGGCACACTCGACGCCGCG
GAAGAAAACAAAACAAAAATATGGTATGTACATGCCATTACAGAGCCGGA
TGTTTTCATGGAAATGGGCCTTACGTTGTTTCCGGGAAAGAAAGTATCAT
ACGGTACAAATTAACCGGCCTGCTCATGTGATTAGACTGCTAACATTTGT
ATACATGAATTAAGATTTTAAGGGGTTCGAAAATACAGTAGTAGTGGAGC
TTGAGTAGGTGTGTGTCTTAGATTTTTCTTTGACGCGATGCCGAAAAGAC
GACGGCGTAAAAAAAAAACGGTGCAGTCACCCACGAAAATATGACCCTCT
CGACGCCGGGAATAGCAGCATGCTCGCGTTTACGAGGAAATAGAGGGGCA
GGTGGATCTTAGACGGCGAACCGGCAGTCGGAAATTATATATATAGAGAC
TCCTGTGGGACATTTTTCGTGTTCAGACTGCTAGAGGCTGCCGGCACGGG
AGGAGCAGCGGCACTCGCGGCGTTGGCTGCCACCGGGGCGAGTCCGGCAG
CCCTAAGATACTACCACTGCGAGAGGAGCCGCTAGTTTTCAGTAAATATT
TACACAAGGCTGTGTTCTGTTCCAAAATAGACCATAATACGAAAACAAGC
TCTGATTCGACAGACGGACAACACGCGCCGCCTCACCGCGGCGTGTGTGT
GTGTGTGTGTGTGTGTGGATGTACGCGTGCGATCAACACAAGCCCGCAAA
CAATTTTGCCCAACGCAAAACCCGGAACAGCTTTAACGTCGGGAACAGCC
CGCTCGCGGACCTCGCGCCGTGGCTGCCATACGGAGGGAAGGGCTTCGAC
CTCATCGTTGTCGGCCTTCAGGAGAGCACCTACAGGGTGAGAGGAGATAA
GATAGATGTTCGTACATTCATAGGAGAGGGCGAGAGAGAGAGAGAGAGAG
AGAGTCCACATGGGCGCGAATGAGAGATGGCAGGGGATTTGCGGGGACAG
CAGCGCGAGGTGTGAAAGAAGAGACAGACAGACAGACAGAGCGGCAGAGA
AGTCTAGACGAACGAGAGACGGCAAAGGATTGGCAGAGACATTGGTCATG
AGTCGGGAGCGAACAAAGGCGACGTAGACGGGGTGAGATAAATATGGGGA
GACAGAACTAGTCTGAGGAAAGACGATACAGCAGTGTACAGAGAGAGGGG
CCCCGCCAACAGGGTAATTGGGTGAAATCGGGGGGGGGGGGCTAGAGACG
ACACACTCCAGAGGAAACTGTGCAACGCCAAAGGGCTATTGTTTTCGGCG
GGGGTTGTGAAACAGACGAGCCAGTGTGTTTTTAGGTTGTTCATAGATGC
ACAGCATGCAGGTAGAAACGGCTACCCAGGACGCATGCAATCGGTTGTAT
TGTGAAAGCACCCCTCATGATTTGTTTGAGTATCTAAAAAGTATATATGT
ATACTTCCGAAAAACTGTCAAATTGTCCAATTGTACTCATCTCACGTTTG
CAGGCGCGTGATGCCGACATCCCCGCGCTACTTCCAATTTGATATTCTCG
GCAGCTATCAGCTCTTGTTATAAAGGTGTTCTTGAAGCCACGTTCCGCTC
TGAAGCTTTGAAGAGGTCGCTTGCCCCGCTTCGACTAGCGACACGAACGA
CCGCGATAACACCCGGCTGTTGACAAGACATGAGCGCAACCACATAACCC
CTGACCCCCCCCCCCCCCCCGCCTCCTCCGCGAGAGAGAGATCAAGCGGA
CCCCCTCTCTGGTGCCTCCTGCCCGCACCGTTCAACTCGATAACGTACCC
TACACATCGCATCGTGGTCCCCCCTCTCCGCCCATATTTCACGCACAGCA
GTTTTCTCAATTTTTTCACGCGTGTGTTTTGTTTATGTTGCTGCCTGTTT
TGTTTTTGCATATGGTGCATAATTTATGTATTTATATGTAAAATAATCAT
TATATTATATCTACATATATATATTCATGCATCATATACGACCGCAGGCA
CCCAGGGCCGCGCGAGACTCCCCGTTCCAGCGCAACTCCCCGTTCCAGCG
CAGCTTCAGCCTCAGCCCCACCAACAGCCTGTCGCCGATGAAGGTGGGGC
GCTCTTCGCCGCGATGGGCGGTGACGACGATGCAGGGCGAAGGCCCCGAC
GACACGCCTCCTCCGGGAACCGGGCTCCGGGGGTCTTCTTATTCCCCCCC
GCCGGTGTCGGTGTTGCCCGCCGGGCTCTCCGCCCACAAGCGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1692:11664..17756+ >mRNA_L-elsbetiae_contig1692.4639.1 ID=mRNA_L-elsbetiae_contig1692.4639.1|Name=mRNA_L-elsbetiae_contig1692.4639.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1098bp|location=Sequence derived from alignment at L-elsbetiae_contig1692:11664..17756+ (Laminarionema elsbetiae ELsaHSoW15) ATGAGCGCTTCGAAGCACGGCACCGACCTTCCCAGCGGAACAAAGCTGGC CGATGTCAATACAGCTGCGACGGCAGAGCAGTATCCGTCCTACATCCGAC GCAAGAGCGCGGGAATGAACGGGGAAGACGACGGGGGGGAGCGAGAGACA GAGAAGGGATACGTCGGCGGGGATCGGGTCAGGCTGCTCGTCGGGAGATG AGCGCTTCGAAGCACGGCACCGACCTTCCCAGCGGAACAAAGCTGGCCGA TGTCAATACAGCTGCGACGGCAGAGCAGTATCCGTCCTACATCCGACGCA AGAGCGCGGGAATGAACGGGGAAGACGACGGGGGGGAGCGAGAGACAGAG AAGGGATACGTCGGCGGGGATCGGGTCAGGCTGCTCGTCGGGAGCTTTAA CGTCGGGAACAGCCCGCTCGCGGACCTCGCGCCGTGGCTGCCATACGGAG GGAAGGGCTTCGACCTCATCGTTGTCGGCCTTCAGGAGAGCACCTACAGG CTTTAACGTCGGGAACAGCCCGCTCGCGGACCTCGCGCCGTGGCTGCCAT ACGGAGGGAAGGGCTTCGACCTCATCGTTGTCGGCCTTCAGGAGAGCACC TACAGGGCACCCAGGGCCGCGCGAGACTCCCCGTTCCAGCGCAACTCCCC GTTCCAGCGCAGCTTCAGCCTCAGCCCCACCAACAGCCTGTCGCCGATGA AGGTGGGGCGCTCTTCGCCGCGATGGGCGGTGACGACGATGCAGGGCGAA GGCCCCGACGACACGCCTCCTCCGGGAACCGGGCTCCGGGGGTCTTCTTA TTCCCCCCCGCCGGTGTCGGTGTTGCCCGCCGGGCTCTCCGCCCACAAGC GCGCACCCAGGGCCGCGCGAGACTCCCCGTTCCAGCGCAACTCCCCGTTC CAGCGCAGCTTCAGCCTCAGCCCCACCAACAGCCTGTCGCCGATGAAGGT GGGGCGCTCTTCGCCGCGATGGGCGGTGACGACGATGCAGGGCGAAGGCC CCGACGACACGCCTCCTCCGGGAACCGGGCTCCGGGGGTCTTCTTATTCC CCCCCGCCGGTGTCGGTGTTGCCCGCCGGGCTCTCCGCCCACAAGCGC back to top
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