mRNA_L-elsbetiae_contig1691.4631.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1691.4631.1
Unique NamemRNA_L-elsbetiae_contig1691.4631.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1691.4631.1 vs. uniprot
Match: D7FSB9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB9_ECTSI)

HSP 1 Score: 206 bits (523), Expect = 4.010e-60
Identity = 145/332 (43.67%), Postives = 185/332 (55.72%), Query Frame = 1 
Query:   28 MAKSRLAVIQDDILAVKHALANKLSFEGLEGQQLNHVLQTLLAQRAEASTASPSCSGG-----GXXXXXXXXXXXXXXXXXTVSRVPVAGASSKAAAAKIRGKKK-KIPSPXXXXXXXX----------------------SPAKKPRTTPPK-KSPSSAKTPAP---EKRRQASSGKAXXXXXXXXXXXXXPPAAKTPVPEXXXXXXXXXXXXNLDRLRQMRKGIKIGDTVSVLMDVNVRGSWELEWAEGEVTREMNRSGIFQIAYDKHRFGKQGCAQVKQEPSMTGESPLRWIHEQRLQIDHPNFFCGQGGPPPVGIDNSRPRGAWFLHQ 927
            M KS+L VIQDDILAVKHALAN +++EGL+G QL  VL TL +QRA+ +T + +         G                  +SRVPV G+ +KA +AK   KK   I +P XXXXXXX                      +PAK+    PPK KSP     PAP   + ++QAS+                   A+ PV +                LR++RK +K+GD VSVL DV++RG+WE  W +GEV REMNRSGIFQIA+D  R G++    VK EP   GE   RW+HEQRL I+HP+FFCGQG  PP+GIDN RP+GAW+LHQ
Sbjct:    1 MEKSKLEVIQDDILAVKHALANNIAYEGLQGDQLKTVLSTLFSQRAQQTTEAATAXXXXXXXXGETASFAAAGGPQGNGPTNMSRVPVNGSRAKAVSAKKSSKKPANITTPAXXXXXXXXXXXXXXXXDTQQTKEVADEETAPAKQ--APPPKSKSPKRQHNPAPRPAQGKKQAST-------------------AEKPVAKKRKTSFGVV-------LRELRKSVKVGDFVSVLGDVSLRGTWEKVWVKGEVVREMNRSGIFQIAFDHDRQGQRSA--VKTEPGSNGEDE-RWVHEQRLSIEHPDFFCGQGDSPPIGIDNLRPKGAWYLHQ 301
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BLAST of mRNA_L-elsbetiae_contig1691.4631.1 vs. uniprot
Match: A0A6H5KF34_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KF34_9PHAE)

HSP 1 Score: 58.2 bits (139), Expect = 7.920e-7
Identity = 26/39 (66.67%), Postives = 32/39 (82.05%), Query Frame = 1 
Query:  586 LRQMRKGIKIGDTVSVLMDVNVRGSWELEWAEGEVTREM 702
            LR++RK IK+GD VSVL DV++RGSWE  W +GEV REM
Sbjct:  108 LRELRKSIKVGDFVSVLGDVSLRGSWEKVWIKGEVVREM 146
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1691.4631.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSB9_ECTSI4.010e-6043.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KF34_9PHAE7.920e-766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1691contigL-elsbetiae_contig1691:6200..8793 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-20_004940.1
Exons2
Model size938
Cds size909
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1691.4631.1prot_L-elsbetiae_contig1691.4631.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1691 6200..8766 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.398356-CDS-L-elsbetiae_contig1691:6199..64361622815702.398356-CDS-L-elsbetiae_contig1691:6199..6436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1691 6200..6436 -
1691683047.5744905-CDS-L-elsbetiae_contig1691:6199..64361691683047.5744905-CDS-L-elsbetiae_contig1691:6199..6436Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1691 6200..6436 -
1622815702.412799-CDS-L-elsbetiae_contig1691:8094..87661622815702.412799-CDS-L-elsbetiae_contig1691:8094..8766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1691 8095..8766 -
1691683047.5839977-CDS-L-elsbetiae_contig1691:8094..87661691683047.5839977-CDS-L-elsbetiae_contig1691:8094..8766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1691 8095..8766 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815702.4240313-UTR-L-elsbetiae_contig1691:8766..87931622815702.4240313-UTR-L-elsbetiae_contig1691:8766..8793Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1691 8767..8793 -
1691683047.601676-UTR-L-elsbetiae_contig1691:8766..87931691683047.601676-UTR-L-elsbetiae_contig1691:8766..8793Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1691 8767..8793 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1691.4631.1

>prot_L-elsbetiae_contig1691.4631.1 ID=prot_L-elsbetiae_contig1691.4631.1|Name=mRNA_L-elsbetiae_contig1691.4631.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=303bp
MAKSRLAVIQDDILAVKHALANKLSFEGLEGQQLNHVLQTLLAQRAEAST
ASPSCSGGGSSGGSSGGSSGGSSTSSTVSRVPVAGASSKAAAAKIRGKKK
KIPSPSEAAAAPASPAKKPRTTPPKKSPSSAKTPAPEKRRQASSGKAAKK
PRTTPPKKSPPPAAKTPVPEQASSGKAARKPRNLDRLRQMRKGIKIGDTV
SVLMDVNVRGSWELEWAEGEVTREMNRSGIFQIAYDKHRFGKQGCAQVKQ
EPSMTGESPLRWIHEQRLQIDHPNFFCGQGGPPPVGIDNSRPRGAWFLHQ
RAA
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mRNA from alignment at L-elsbetiae_contig1691:6200..8793-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1691.4631.1 ID=mRNA_L-elsbetiae_contig1691.4631.1|Name=mRNA_L-elsbetiae_contig1691.4631.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2594bp|location=Sequence derived from alignment at L-elsbetiae_contig1691:6200..8793- (Laminarionema elsbetiae ELsaHSoW15)
CCGCAGCGCACAAAAAGCACCTGCATCATGGCGAAGAGCAGGTTAGCGGT
CATCCAAGATGACATATTGGCGGTCAAGCATGCCTTGGCCAACAAGCTCT
CCTTCGAAGGACTTGAAGGACAACAACTGAACCACGTCCTTCAGACCCTC
TTGGCGCAACGAGCTGAAGCGAGCACAGCAAGTCCTTCATGTTCCGGCGG
CGGAAGCAGCGGCGGAAGCAGCGGCGGAAGCAGCGGCGGAAGCAGCACCA
GCAGCACAGTGTCGAGAGTTCCTGTGGCTGGAGCGAGTTCGAAAGCCGCA
GCAGCTAAGATAAGAGGCAAGAAGAAGAAGATCCCCTCACCTAGTGAAGC
CGCTGCTGCTCCTGCTTCGCCCGCTAAGAAGCCGCGCACCACCCCACCCA
AAAAATCGCCATCCTCCGCCAAGACACCCGCGCCCGAGAAACGGCGGCAG
GCAAGCTCCGGGAAGGCAGCAAAGAAACCGCGGACCACTCCACCCAAAAA
ATCGCCACCCCCCGCCGCCAAGACACCCGTGCCCGAGCAGGCAAGCTCCG
GGAAGGCAGCAAGGAAGCCGAGGAACCTGGATCGATTGCGCCAAATGCGA
AAAGGTATCAAGATCGGCGACACCGTGTCGGTCCTCATGGATGTGAACGT
CAGAGGATCTTGGGAGTTGGAATGGGCCGAGGGAGAGGTGACCCGAGAGG
TGAGATTAGGTGGATGCGTTGCGCAACGGGTGCACCAGTTTCGGGGTCCA
CAGGCGGAAATAATGCGAAAAAAAAGGAACTTTTTACTTTTTTGCGCCAA
ACATGCGCGGCGCGTTTTGAAAGAAGAAAATCGACTGCGCTCGGTCGAAA
TAGATATGGTACATTTGTACAACATATGTACATTGATTAAAAGCAAATAG
AGCTTGTGGCCGTCCGTTAAAACTCCAATGCTTATGGGCACACGAGGTTT
GGCGGCATGGGCATAGATTTTTAGATCAAATTCAGCGAAAACTCTCTATT
GCCACGAGCGTCCACAACAACGAGATCTGAGGTCTGAAAACTCCACGTCA
GGGCAGTCAAAGACACTGGGTAGGGTGTGGCAGTCAAACACATCTCCTTG
GGGCGTGCTTATCCAGGCAAAACAAGACCACCCTCTCTTGAGTTGAGTAA
ACGCGGGGGGACATGGGTGCTTTCCTACACTACATGGATCCTAGCCCGAA
CCCGTGATCAAAATTCAGTAGTCTACGCGAGGTTTTTGTCTTAAGCTAAC
ATATGGGATAAAGTATGGAAACCGTTTGGGGGGGTCGGTGGTTGGGGTTA
GGTTTAGGGTTAGGGTTAGAGTTAGTAGTATAAAATTAATTTCTGCGTAG
GCGATCCTCAAAATTTGACCCGGGGAATCGTGTCTAAGTGGGGAGAGGTG
CCTTGAACTGGAATATTAGAGCTTAGCGGGAGTGGTAACCCTCTGAACCG
GAATCACGGGCACTCAATTTCGGAACGCGCCCAGGCACATGAATGTGGGT
GGCAACAAGTTCTCTTGCAGCTCGTATACACAACCTAGTTTAAGTTCTCA
TTTATCTCTGCACGCTTCGAGAGCGAACGGTCAAGCAATGGTTGCGGGAT
AACTGCAGTGGGCGTTTCACTGGAGCTGTAGTAATGTACATATGTATGTA
CCTACAAGGTTTTTCGGCGGCTGCCGCCGCCACGCTCACTGCCGCGATCT
TCGCTCTCCCCAACCCCCGTCAGCTGAGGTGCGAAAATGTTGCCTCTACA
TGCGGCATGTACATACCTCCAGTATGTACATACCTCCATACATGTGTATG
TAGAATCTCGAAGGCCGAACATTTTCCGCTCCGAGGTCGACCGACGGGTG
GTGTATTTATTTCGCCCCCGTCTACGCGCACCCAGTGTCTCTTTTATTAT
GTCTCTCACTGCCCCTTCCCGATCTTCGGTATATCTTTCCTTTTTGGGAT
TGTGTTGCCCCCCCAGCTGTTGTCGCCAAGGTCTGCATCACACCACAGCA
GAGCAGCACTTCGGCGACACAGATGTATTTACCGGAAGAGGGCTTCGATC
GTTCAGTGAACGTGCATGTAGTTATTTTATGTTTCTCCCAACTGAAAAAC
GTGCTCATGGCTTGTCTAGTCCCTCAGATTTAGACATGGGATGTCTCTCT
TGTACATACGCACAGACATACGACCCGTCTGCTTCGGCGAATTTGATCTG
CGTATGTATGTACAATCTAAAGAAGCCGATAATGGGAAACAAACAAAAAA
ACATGTTCAAAAGCCGGCCTGCCGACAAAGCCCTTTTCTGACCACGGAAG
CCATTCACCAGATCGCTTGCTGTTATACTCCACCCGGTCGACCTTCTCTT
CCGGCAGATGAATCGCAGCGGGATCTTCCAGATAGCGTACGACAAGCACA
GGTTCGGCAAACAGGGCTGCGCACAAGTGAAGCAGGAGCCAAGCATGACC
GGGGAAAGCCCTCTTAGATGGATCCACGAGCAGAGGCTTCAGATCGACCA
CCCGAACTTCTTCTGCGGCCAGGGAGGCCCCCCACCGGTCGGCATTGACA
ACAGCCGCCCGAGAGGCGCGTGGTTCCTTCACCAGAGGGCCGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1691:6200..8793-

>mRNA_L-elsbetiae_contig1691.4631.1 ID=mRNA_L-elsbetiae_contig1691.4631.1|Name=mRNA_L-elsbetiae_contig1691.4631.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1818bp|location=Sequence derived from alignment at L-elsbetiae_contig1691:6200..8793- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAAGAGCAGGTTAGCGGTCATCCAAGATGACATATTGGCGGTCAA
GCATGCCTTGGCCAACAAGCTCTCCTTCGAAGGACTTGAAGGACAACAAC
TGAACCACGTCCTTCAGACCCTCTTGGCGCAACGAGCTGAAGCGAGCACA
GCAAGTCCTTCATGTTCCGGCGGCGGAAGCAGCGGCGGAAGCAGCGGCGG
AAGCAGCGGCGGAAGCAGCACCAGCAGCACAGTGTCGAGAGTTCCTGTGG
CTGGAGCGAGTTCGAAAGCCGCAGCAGCTAAGATAAGAGGCAAGAAGAAG
AAGATCCCCTCACCTAGTGAAGCCGCTGCTGCTCCTGCTTCGCCCGCTAA
GAAGCCGCGCACCACCCCACCCAAAAAATCGCCATCCTCCGCCAAGACAC
CCGCGCCCGAGAAACGGCGGCAGGCAAGCTCCGGGAAGGCAGCAAAGAAA
CCGCGGACCACTCCACCCAAAAAATCGCCACCCCCCGCCGCCAAGACACC
CGTGCCCGAGCAGGCAAGCTCCGGGAAGGCAGCAAGGAAGCCGAGGAACC
TGGATCGATTGCGCCAAATGCGAAAAGGTATCAAGATCGGCGACACCGTG
TCGGTCCTCATGGATGTGAACGTCAGAGGATCTTGGGAGTTGGAATGGGC
CGAGGGAGAGGTGACCCGAGAGATGGCGAAGAGCAGGTTAGCGGTCATCC
AAGATGACATATTGGCGGTCAAGCATGCCTTGGCCAACAAGCTCTCCTTC
GAAGGACTTGAAGGACAACAACTGAACCACGTCCTTCAGACCCTCTTGGC
GCAACGAGCTGAAGCGAGCACAGCAAGTCCTTCATGTTCCGGCGGCGGAA
GCAGCGGCGGAAGCAGCGGCGGAAGCAGCGGCGGAAGCAGCACCAGCAGC
ACAGTGTCGAGAGTTCCTGTGGCTGGAGCGAGTTCGAAAGCCGCAGCAGC
TAAGATAAGAGGCAAGAAGAAGAAGATCCCCTCACCTAGTGAAGCCGCTG
CTGCTCCTGCTTCGCCCGCTAAGAAGCCGCGCACCACCCCACCCAAAAAA
TCGCCATCCTCCGCCAAGACACCCGCGCCCGAGAAACGGCGGCAGGCAAG
CTCCGGGAAGGCAGCAAAGAAACCGCGGACCACTCCACCCAAAAAATCGC
CACCCCCCGCCGCCAAGACACCCGTGCCCGAGCAGGCAAGCTCCGGGAAG
GCAGCAAGGAAGCCGAGGAACCTGGATCGATTGCGCCAAATGCGAAAAGG
TATCAAGATCGGCGACACCGTGTCGGTCCTCATGGATGTGAACGTCAGAG
GATCTTGGGAGTTGGAATGGGCCGAGGGAGAGGTGACCCGAGAGATGAAT
CGCAGCGGGATCTTCCAGATAGCGTACGACAAGCACAGGTTCGGCAAACA
GGGCTGCGCACAAGTGAAGCAGGAGCCAAGCATGACCGGGGAAAGCCCTC
TTAGATGGATCCACGAGCAGAGGCTTCAGATCGACCACCCGAACTTCTTC
TGCGGCCAGGGAGGCCCCCCACCGGTCGGCATTGACAACAGCCGCCCGAG
AGGCGCGTGGTTCCTTCACCAGAGGGCCGCCATGAATCGCAGCGGGATCT
TCCAGATAGCGTACGACAAGCACAGGTTCGGCAAACAGGGCTGCGCACAA
GTGAAGCAGGAGCCAAGCATGACCGGGGAAAGCCCTCTTAGATGGATCCA
CGAGCAGAGGCTTCAGATCGACCACCCGAACTTCTTCTGCGGCCAGGGAG
GCCCCCCACCGGTCGGCATTGACAACAGCCGCCCGAGAGGCGCGTGGTTC
CTTCACCAGAGGGCCGCC
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