mRNA_L-elsbetiae_contig169.4625.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig169.4625.1
Unique NamemRNA_L-elsbetiae_contig169.4625.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig169.4625.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig169contigL-elsbetiae_contig169:15786..16742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size308
Cds size306
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig169.4625.1prot_L-elsbetiae_contig169.4625.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig169 15788..16742 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.9160073-CDS-L-elsbetiae_contig169:15787..158371622815701.9160073-CDS-L-elsbetiae_contig169:15787..15837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig169 15788..15837 -
1691683047.2780015-CDS-L-elsbetiae_contig169:15787..158371691683047.2780015-CDS-L-elsbetiae_contig169:15787..15837Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig169 15788..15837 -
1622815701.9323957-CDS-L-elsbetiae_contig169:16004..161451622815701.9323957-CDS-L-elsbetiae_contig169:16004..16145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig169 16005..16145 -
1691683047.2915502-CDS-L-elsbetiae_contig169:16004..161451691683047.2915502-CDS-L-elsbetiae_contig169:16004..16145Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig169 16005..16145 -
1622815701.9440565-CDS-L-elsbetiae_contig169:16627..167421622815701.9440565-CDS-L-elsbetiae_contig169:16627..16742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig169 16628..16742 -
1691683047.3018339-CDS-L-elsbetiae_contig169:16627..167421691683047.3018339-CDS-L-elsbetiae_contig169:16627..16742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig169 16628..16742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig169.4625.1

>prot_L-elsbetiae_contig169.4625.1 ID=prot_L-elsbetiae_contig169.4625.1|Name=mRNA_L-elsbetiae_contig169.4625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=102bp
ESAVLAAAVEVSADVVDKEPAVDEAALDVVVAAAETGAASIEDAAAPVVA
EATDPEAPASGEGVVPESGDVVDEPVVEDGASPAVEPTEETTSPEATEEP
AE
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mRNA from alignment at L-elsbetiae_contig169:15786..16742-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig169.4625.1 ID=mRNA_L-elsbetiae_contig169.4625.1|Name=mRNA_L-elsbetiae_contig169.4625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=957bp|location=Sequence derived from alignment at L-elsbetiae_contig169:15786..16742- (Laminarionema elsbetiae ELsaHSoW15)
GAGTCCGCTGTTCTTGCGGCGGCCGTAGAAGTCTCGGCGGACGTTGTCGA
CAAGGAGCCCGCCGTTGATGAAGCTGCTCTTGACGTCGTCGTCGCTGCTG
CCGAGACTGGTGCTGGTGAGTGAAACCGTATGCGTGAAGGATTGGCGTTC
TGTTCCGCCGAGGCTCCCTGCAGGCGGTATTGTTTCGGCGTGGTTTTTGA
TCGTGCGAAACTCGGCGGTGGGTGCTCTGTGAAAGCTGCGGACGGTCATG
GGCGCACGGTAGACCGTTGGAAGTAATCTTGATTCATCGTGCAGCAAAGC
GGTCGCTACTACCGTGTACTGTGAATTCAGCTATGGTCGCGGCCGGCCAT
CTTTCTGCGCGCCGCGAACCCGGCTCGGTGCAATTAGGCAATCGCTCGAT
GCTGCTTCCATCCTGAAGCGGCCTGCTGGTATGTATTGCCATTGCGTATT
TGGTAGTGTTCATATCGGCACTCTTTGTGTTGTTGGAAGCGAGCCACTAC
ACACACACCAGTCCTGTAGCGACACCTTTGTTTATGGCTCTTGCGCTGCT
GCCCCCACTGGGGCTTTTATTTCGCCTGCCCTGTTGGATCGCTGCAGCTT
CGATCGAAGATGCCGCCGCGCCCGTTGTCGCAGAGGCCACGGATCCTGAA
GCACCTGCATCTGGGGAGGGCGTCGTCCCGGAGTCTGGCGATGTCGTGGA
CGAACCCGTTGTTGAGGATGGTGCTAGCCCTGCCGTCGGTGAGTGGTAGA
AATACTGTATTGTCTCATGCCCGTTCCCGCAGCGGGGGAATCGACCGTAT
TTCCTCGCAGATGATCCGAGTCTTGCCAACAATGCAATGGTACCAAAGGC
CCGCCTCTCGCTCGTCTATCCCCTCTCTGTCCTTCGCCCAACGCTGCTTC
ACCAGAGCCGACAGAGGAAACAACGTCACCGGAGGCTACGGAAGAGCCTG
CAGAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig169:15786..16742-

>mRNA_L-elsbetiae_contig169.4625.1 ID=mRNA_L-elsbetiae_contig169.4625.1|Name=mRNA_L-elsbetiae_contig169.4625.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=612bp|location=Sequence derived from alignment at L-elsbetiae_contig169:15786..16742- (Laminarionema elsbetiae ELsaHSoW15)
GAGTCCGCTGTTCTTGCGGCGGCCGTAGAAGTCTCGGCGGACGTTGTCGA
CAAGGAGCCCGCCGTTGATGAAGCTGCTCTTGACGTCGTCGTCGCTGCTG
CCGAGACTGGTGCTGGAGTCCGCTGTTCTTGCGGCGGCCGTAGAAGTCTC
GGCGGACGTTGTCGACAAGGAGCCCGCCGTTGATGAAGCTGCTCTTGACG
TCGTCGTCGCTGCTGCCGAGACTGGTGCTGCTTCGATCGAAGATGCCGCC
GCGCCCGTTGTCGCAGAGGCCACGGATCCTGAAGCACCTGCATCTGGGGA
GGGCGTCGTCCCGGAGTCTGGCGATGTCGTGGACGAACCCGTTGTTGAGG
ATGGTGCTAGCCCTGCCGTCGCTTCGATCGAAGATGCCGCCGCGCCCGTT
GTCGCAGAGGCCACGGATCCTGAAGCACCTGCATCTGGGGAGGGCGTCGT
CCCGGAGTCTGGCGATGTCGTGGACGAACCCGTTGTTGAGGATGGTGCTA
GCCCTGCCGTCGAGCCGACAGAGGAAACAACGTCACCGGAGGCTACGGAA
GAGCCTGCAGAGAGCCGACAGAGGAAACAACGTCACCGGAGGCTACGGAA
GAGCCTGCAGAG
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