mRNA_L-elsbetiae_contig169.4623.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig169.4623.1
Unique NamemRNA_L-elsbetiae_contig169.4623.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig169.4623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig169contigL-elsbetiae_contig169:10970..12194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size594
Cds size570
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig169.4623.1prot_L-elsbetiae_contig169.4623.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig169 10994..12194 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.861915-UTR-L-elsbetiae_contig169:10969..109931622815701.861915-UTR-L-elsbetiae_contig169:10969..10993Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig169 10970..10993 -
1691683047.2379057-UTR-L-elsbetiae_contig169:10969..109931691683047.2379057-UTR-L-elsbetiae_contig169:10969..10993Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig169 10970..10993 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.8721182-CDS-L-elsbetiae_contig169:10993..110111622815701.8721182-CDS-L-elsbetiae_contig169:10993..11011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig169 10994..11011 -
1691683047.2554183-CDS-L-elsbetiae_contig169:10993..110111691683047.2554183-CDS-L-elsbetiae_contig169:10993..11011Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig169 10994..11011 -
1622815701.8839338-CDS-L-elsbetiae_contig169:11642..121941622815701.8839338-CDS-L-elsbetiae_contig169:11642..12194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig169 11643..12194 -
1691683047.268847-CDS-L-elsbetiae_contig169:11642..121941691683047.268847-CDS-L-elsbetiae_contig169:11642..12194Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig169 11643..12194 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig169.4623.1

>prot_L-elsbetiae_contig169.4623.1 ID=prot_L-elsbetiae_contig169.4623.1|Name=mRNA_L-elsbetiae_contig169.4623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=190bp
QEGAQAEGTETPAVESAEDPAAEPVSEAATGFCGGAAEPTAGEEKATEPT
VAAAAVETPADAAEGDVADAVVPAPRHRGRGGGFGFFKKWVKHARKLASR
KKLKGKRSKTPAALSSAKPAAAEEGAPEVEEKKEEGGEDVAVGEETSLAD
AAEDAEPEMVPGVVTAAGGTADESTAVDGEEMAAPIQSA*
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mRNA from alignment at L-elsbetiae_contig169:10970..12194-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig169.4623.1 ID=mRNA_L-elsbetiae_contig169.4623.1|Name=mRNA_L-elsbetiae_contig169.4623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1225bp|location=Sequence derived from alignment at L-elsbetiae_contig169:10970..12194- (Laminarionema elsbetiae ELsaHSoW15)
CAGGAAGGCGCGCAGGCTGAGGGCACCGAGACCCCCGCCGTCGAGTCGGC
TGAGGACCCTGCCGCTGAGCCTGTGAGCGAGGCCGCTACAGGGTTTTGTG
GTGGTGCTGCTGAGCCTACCGCAGGCGAGGAAAAAGCCACCGAGCCCACC
GTTGCTGCGGCGGCGGTGGAAACACCAGCGGACGCTGCGGAGGGAGACGT
TGCTGATGCCGTCGTCCCAGCGCCTAGACACCGTGGTCGAGGCGGCGGGT
TTGGCTTCTTCAAGAAGTGGGTTAAGCATGCAAGGAAGCTGGCCTCCCGC
AAGAAGCTCAAAGGAAAACGCTCCAAGACCCCTGCCGCGCTCTCTTCCGC
CAAGCCCGCGGCTGCGGAAGAGGGGGCCCCGGAAGTAGAAGAGAAAAAGG
AGGAGGGAGGCGAGGACGTTGCTGTCGGGGAGGAGACCTCCTTGGCGGAT
GCTGCCGAAGATGCCGAACCTGAGATGGTTCCCGGAGTTGTCACTGCCGC
CGGGGGTACCGCAGACGAGTCTACGGCCGTTGACGGGGAAGAGATGGCTG
CGGTAAGCTCTCATGACCGCCGCATGACAATGTTTCGTCCGGTTGTTAAC
TAAATAAGCTATGTAGGTGCCCATGATAGCTCTCGCCGCCTACGGCACTG
GCGGTTTTGTGGTGGGCGCAAGGCATGGCCACTTTTATTTGTTTGGGTCG
GGGCTCTGATGCTACGGTTCAGCTCTCGGGCCCATTCGACTCGGATATAT
CTGGCAGCATCGGGTTCGTCTGGGCTGGGCACGTCATGGTTGGGTTAGGG
CTAGGGTTGCTTGCACTGCGCACCTTGTTTTGCTCTTGCGGACCATAAAA
TATACCAGCATCAAGGTATTCAAGGTGGACAGCTGAGACGGGACGAACGG
GGAAAATGTTTTTGGAGGGCAATGCCTCACCGCTGGTTGTCCATCCGTGT
CGCCCCTTGAAGAGAACCATAACACGAACCACCAGAGTTGAACAATCCGC
GGACGTCTGCTTTGTTTCGTTTTTGTTATTTCTGATGGGGTGAAGTACTT
GGGTTGGACAATTTTGTGTGAAGGCATAAATATATGCTGTTGCGAAGATC
TCCGCGCACCGACGTTATTTCTTAGTTTTTTCTTCCGCATTGTTCGTACC
GCATCGACCGTTCGACCCACATGGCAACCCCAGCCAATTCAGAGTGCGTA
ACAATTCGGCGAGGGCCAGAACCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig169:10970..12194-

>mRNA_L-elsbetiae_contig169.4623.1 ID=mRNA_L-elsbetiae_contig169.4623.1|Name=mRNA_L-elsbetiae_contig169.4623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1140bp|location=Sequence derived from alignment at L-elsbetiae_contig169:10970..12194- (Laminarionema elsbetiae ELsaHSoW15)
CAGGAAGGCGCGCAGGCTGAGGGCACCGAGACCCCCGCCGTCGAGTCGGC
TGAGGACCCTGCCGCTGAGCCTGTGAGCGAGGCCGCTACAGGGTTTTGTG
GTGGTGCTGCTGAGCCTACCGCAGGCGAGGAAAAAGCCACCGAGCCCACC
GTTGCTGCGGCGGCGGTGGAAACACCAGCGGACGCTGCGGAGGGAGACGT
TGCTGATGCCGTCGTCCCAGCGCCTAGACACCGTGGTCGAGGCGGCGGGT
TTGGCTTCTTCAAGAAGTGGGTTAAGCATGCAAGGAAGCTGGCCTCCCGC
AAGAAGCTCAAAGGAAAACGCTCCAAGACCCCTGCCGCGCTCTCTTCCGC
CAAGCCCGCGGCTGCGGAAGAGGGGGCCCCGGAAGTAGAAGAGAAAAAGG
AGGAGGGAGGCGAGGACGTTGCTGTCGGGGAGGAGACCTCCTTGGCGGAT
GCTGCCGAAGATGCCGAACCTGAGATGGTTCCCGGAGTTGTCACTGCCGC
CGGGGGTACCGCAGACGAGTCTACGGCCGTTGACGGGGAAGAGATGGCTG
CGCAGGAAGGCGCGCAGGCTGAGGGCACCGAGACCCCCGCCGTCGAGTCG
GCTGAGGACCCTGCCGCTGAGCCTGTGAGCGAGGCCGCTACAGGGTTTTG
TGGTGGTGCTGCTGAGCCTACCGCAGGCGAGGAAAAAGCCACCGAGCCCA
CCGTTGCTGCGGCGGCGGTGGAAACACCAGCGGACGCTGCGGAGGGAGAC
GTTGCTGATGCCGTCGTCCCAGCGCCTAGACACCGTGGTCGAGGCGGCGG
GTTTGGCTTCTTCAAGAAGTGGGTTAAGCATGCAAGGAAGCTGGCCTCCC
GCAAGAAGCTCAAAGGAAAACGCTCCAAGACCCCTGCCGCGCTCTCTTCC
GCCAAGCCCGCGGCTGCGGAAGAGGGGGCCCCGGAAGTAGAAGAGAAAAA
GGAGGAGGGAGGCGAGGACGTTGCTGTCGGGGAGGAGACCTCCTTGGCGG
ATGCTGCCGAAGATGCCGAACCTGAGATGGTTCCCGGAGTTGTCACTGCC
GCCGGGGGTACCGCAGACGAGTCTACGGCCGTTGACGGGGAAGAGATGGC
TGCGCCAATTCAGAGTGCGTAACCAATTCAGAGTGCGTAA
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