mRNA_L-elsbetiae_contig16873.4613.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig16873.4613.1
Unique NamemRNA_L-elsbetiae_contig16873.4613.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig16873.4613.1 vs. uniprot
Match: A0A6H5JLH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH5_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 1.500e-33
Identity = 78/124 (62.90%), Postives = 89/124 (71.77%), Query Frame = 2 
Query:   68 FTLKIRVLRSEAMEALL*GCMIWGL---HVATTTSC*YRSTTNYSRRVIGYRRKRGTFRQLFYAQALMKRVGCQSVEATVRQRRLLFAGALARQPNGRLPKRLMFGKLASW*G-GRTRPEHN*L 427
            F LK R+L++EA+EALL GCM W     H     +  +R       RVIGYRRKRGT+RQL YAQAL KRVGCQSVEATVRQRRLLFAGA+ARQP+GRLPKRLMFG+L      G+  PE N L
Sbjct:  100 FRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLL----RVIGYRRKRGTYRQLSYAQAL-KRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWL 218
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BLAST of mRNA_L-elsbetiae_contig16873.4613.1 vs. uniprot
Match: A0A6H5KLX9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLX9_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 4.420e-33
Identity = 78/124 (62.90%), Postives = 89/124 (71.77%), Query Frame = 2 
Query:   68 FTLKIRVLRSEAMEALL*GCMIWGL---HVATTTSC*YRSTTNYSRRVIGYRRKRGTFRQLFYAQALMKRVGCQSVEATVRQRRLLFAGALARQPNGRLPKRLMFGKLASW*G-GRTRPEHN*L 427
            F LK R+L++EA+EALL GCM W     H     +  +R       RVIGYRRKRGT+RQL YAQAL KRVGCQSVEATVRQRRLLFAGA+ARQP+GRLPKRLMFG+L      G+  PE N L
Sbjct:  151 FRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLL----RVIGYRRKRGTYRQLSYAQAL-KRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWL 269
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BLAST of mRNA_L-elsbetiae_contig16873.4613.1 vs. uniprot
Match: A0A6H5JWS4_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWS4_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 8.910e-33
Identity = 78/124 (62.90%), Postives = 89/124 (71.77%), Query Frame = 2 
Query:   68 FTLKIRVLRSEAMEALL*GCMIWGL---HVATTTSC*YRSTTNYSRRVIGYRRKRGTFRQLFYAQALMKRVGCQSVEATVRQRRLLFAGALARQPNGRLPKRLMFGKLASW*G-GRTRPEHN*L 427
            F LK R+L++EA+EALL GCM W     H     +  +R       RVIGYRRKRGT+RQL YAQAL KRVGCQSVEATVRQRRLLFAGA+ARQP+GRLPKRLMFG+L      G+  PE N L
Sbjct:  119 FRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLL----RVIGYRRKRGTYRQLSYAQAL-KRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWL 237
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BLAST of mRNA_L-elsbetiae_contig16873.4613.1 vs. uniprot
Match: A0A6H5JEX7_9PHAE (Reverse transcriptase domain-containing protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX7_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 3.140e-32
Identity = 79/124 (63.71%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   68 FTLKIRVLRSEAMEALL*GCMIWGL---HVATTTSC*YRSTTNYSRRVIGYRRKRGTFRQLFYAQALMKRVGCQSVEATVRQRRLLFAGALARQPNGRLPKRLMFGKLASW*G-GRTRPEHN*L 427
            F LK R+L++EA+EALL GCM W     H     +  +R       RVIGYRRKRGT+RQL YAQAL KRVGCQSVEATVRQRRLLFAGA+ARQP+GRLPKRLMFG+L    G G+  PE N L
Sbjct:  570 FRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLL----RVIGYRRKRGTYRQLSYAQAL-KRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEGPGQGNPEQNWL 688
[Close]
BLAST of mRNA_L-elsbetiae_contig16873.4613.1 vs. uniprot
Match: A0A6H5KA81_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA81_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 5.570e-32
Identity = 79/124 (63.71%), Postives = 89/124 (71.77%), Query Frame = 2 
Query:   68 FTLKIRVLRSEAMEALL*GCMIWGL---HVATTTSC*YRSTTNYSRRVIGYRRKRGTFRQLFYAQALMKRVGCQSVEATVRQRRLLFAGALARQPNGRLPKRLMFGKLASW*G-GRTRPEHN*L 427
            F LK R+L++EA+EALL GCM W     H     +  +R       RVIGYRRKRGT+RQL YAQAL KRVGCQSVEATVRQRRLLFAGA+ARQP+GRLPKRLMFG+L      GR  PE N L
Sbjct:  402 FRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLL----RVIGYRRKRGTYRQLSYAQAL-KRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGENPGRGSPEQNWL 520
[Close]
BLAST of mRNA_L-elsbetiae_contig16873.4613.1 vs. uniprot
Match: A0A6H5K7U5_9PHAE (Reverse transcriptase domain-containing protein n=9 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7U5_9PHAE)

HSP 1 Score: 130 bits (326), Expect = 8.510e-32
Identity = 79/124 (63.71%), Postives = 89/124 (71.77%), Query Frame = 2 
Query:   68 FTLKIRVLRSEAMEALL*GCMIWGL---HVATTTSC*YRSTTNYSRRVIGYRRKRGTFRQLFYAQALMKRVGCQSVEATVRQRRLLFAGALARQPNGRLPKRLMFGKLASW*G-GRTRPEHN*L 427
            F LK R+L++EA+EALL GCM W     H     +  +R       RVIGYRRKRGT+RQL YAQAL KRVGCQSVEATVRQRRLLFAGA+ARQP+GRLPKRLMFG+L      GR  PE N L
Sbjct:  899 FRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLL----RVIGYRRKRGTYRQLSYAQAL-KRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGRGNPEQNWL 1017
[Close]
BLAST of mRNA_L-elsbetiae_contig16873.4613.1 vs. uniprot
Match: A0A6H5KX41_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX41_9PHAE)

HSP 1 Score: 129 bits (324), Expect = 1.570e-31
Identity = 78/124 (62.90%), Postives = 90/124 (72.58%), Query Frame = 2 
Query:   68 FTLKIRVLRSEAMEALL*GCMIWGL---HVATTTSC*YRSTTNYSRRVIGYRRKRGTFRQLFYAQALMKRVGCQSVEATVRQRRLLFAGALARQPNGRLPKRLMFGKLASW*G-GRTRPEHN*L 427
            F+LK R+L++EA+EALL GCM W     H     +  +R       RVIGYRRKRGT+RQL YAQAL KRVGCQSVEATVRQRRLLFAGA+ARQP+GRLPKRLMFG+L      G+  PE N L
Sbjct:  843 FSLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLL----RVIGYRRKRGTYRQLSYAQAL-KRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWL 961
[Close]
BLAST of mRNA_L-elsbetiae_contig16873.4613.1 vs. uniprot
Match: A0A6H5JBT6_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBT6_9PHAE)

HSP 1 Score: 125 bits (315), Expect = 1.900e-31
Identity = 75/116 (64.66%), Postives = 87/116 (75.00%), Query Frame = 2 
Query:   68 FTLKIRVLRSEAMEALL*GCMIWGL---HVATTTSC*YRSTTNYSRRVIGYRRKRGTFRQLFYAQALMKRVGCQSVEATVRQRRLLFAGALARQPNGRLPKRLMFGKLASW*GGRT 406
            F LKIR+L++EAM+ALL GCM W     H  T  S  +R       RVIGY+RK+ T+RQL YAQ L KRV CQSVEAT+RQRRLLFAGALARQP+GRLPKRLMFG+LA   GGR+
Sbjct:  265 FRLKIRLLQAEAMDALLYGCMTWSPLSGHYQTLRSIHHRLLL----RVIGYKRKKDTYRQLSYAQTL-KRVECQSVEATIRQRRLLFAGALARQPDGRLPKRLMFGELA---GGRS 372
[Close]
BLAST of mRNA_L-elsbetiae_contig16873.4613.1 vs. uniprot
Match: A0A6H5KQ91_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ91_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 2.620e-31
Identity = 78/124 (62.90%), Postives = 89/124 (71.77%), Query Frame = 2 
Query:   68 FTLKIRVLRSEAMEALL*GCMIWGL---HVATTTSC*YRSTTNYSRRVIGYRRKRGTFRQLFYAQALMKRVGCQSVEATVRQRRLLFAGALARQPNGRLPKRLMFGKLASW*G-GRTRPEHN*L 427
            F LK R+L++EA+EALL GCM W     H     +  +R       RVIGYRRKRGT+RQL YAQAL KRVGCQSVEATVRQRRLLFAGA+ARQP+GRLPKRLMFG+L      G+  PE N L
Sbjct:  514 FRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLL----RVIGYRRKRGTYRQLSYAQAL-KRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWL 632
[Close]
BLAST of mRNA_L-elsbetiae_contig16873.4613.1 vs. uniprot
Match: A0A6H5K319_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K319_9PHAE)

HSP 1 Score: 128 bits (322), Expect = 3.000e-31
Identity = 78/124 (62.90%), Postives = 89/124 (71.77%), Query Frame = 2 
Query:   68 FTLKIRVLRSEAMEALL*GCMIWGL---HVATTTSC*YRSTTNYSRRVIGYRRKRGTFRQLFYAQALMKRVGCQSVEATVRQRRLLFAGALARQPNGRLPKRLMFGKLASW*G-GRTRPEHN*L 427
            F LK R+L++EA+EALL GCM W     H     +  +R       RVIGYRRKRGT+RQL YAQAL KRVGCQSVEATVRQRRLLFAGA+ARQP+GRLPKRLMFG+L      G+  PE N L
Sbjct: 1186 FRLKARLLQAEAVEALLYGCMTWSPRRNHYGMLQTTHHRLLL----RVIGYRRKRGTYRQLSYAQAL-KRVGCQSVEATVRQRRLLFAGAVARQPDGRLPKRLMFGELVGGEDPGQGNPEQNWL 1304
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig16873.4613.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JLH5_9PHAE1.500e-3362.90Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLX9_9PHAE4.420e-3362.90Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWS4_9PHAE8.910e-3362.90Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JEX7_9PHAE3.140e-3263.71Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KA81_9PHAE5.570e-3263.71Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K7U5_9PHAE8.510e-3263.71Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KX41_9PHAE1.570e-3162.90Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JBT6_9PHAE1.900e-3164.66Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ91_9PHAE2.620e-3162.90Reverse transcriptase domain-containing protein n=... [more]
A0A6H5K319_9PHAE3.000e-3162.90Reverse transcriptase domain-containing protein n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig16873contigL-elsbetiae_contig16873:1127..1637 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size513
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.1357615-CDS-L-elsbetiae_contig16873:1126..15461622815701.1357615-CDS-L-elsbetiae_contig16873:1126..1546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16873 1127..1546 +
1691683046.7803211-CDS-L-elsbetiae_contig16873:1126..15461691683046.7803211-CDS-L-elsbetiae_contig16873:1126..1546Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig16873 1127..1546 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815701.1486647-UTR-L-elsbetiae_contig16873:1546..16371622815701.1486647-UTR-L-elsbetiae_contig16873:1546..1637Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16873 1547..1637 +
1691683046.789401-UTR-L-elsbetiae_contig16873:1546..16371691683046.789401-UTR-L-elsbetiae_contig16873:1546..1637Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig16873 1547..1637 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig16873.4613.1prot_L-elsbetiae_contig16873.4613.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig16873 1127..1546 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig16873.4613.1

>prot_L-elsbetiae_contig16873.4613.1 ID=prot_L-elsbetiae_contig16873.4613.1|Name=mRNA_L-elsbetiae_contig16873.4613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
CPRSGGALFSKTQFFCGTIIIIVYTQDPGTSFGGDGGTVVRLHDLGAPRC
NYYKLLISIHHQLLQASHWVPAQARYLPAAFLRPGPDEAGGVPERGSHCP
TAASAVCRGLGKAAERATPQAADVRQVGELVGGEDPPGT*
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mRNA from alignment at L-elsbetiae_contig16873:1127..1637+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig16873.4613.1 ID=mRNA_L-elsbetiae_contig16873.4613.1|Name=mRNA_L-elsbetiae_contig16873.4613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=511bp|location=Sequence derived from alignment at L-elsbetiae_contig16873:1127..1637+ (Laminarionema elsbetiae ELsaHSoW15)
TGCCCGCGTTCAGGCGGTGCACTGTTCTCTAAGACCCAGTTTTTTTGTGG
TACTATAATCATCATCGTTTACACTCAAGATCCGGGTACTTCGTTCGGAG
GCGATGGAGGCACTGTTGTAAGGCTGCATGATCTGGGGGCTCCACGTTGC
AACTACTACAAGCTGCTGATATCGATCCACCACCAACTACTCCAGGCGAG
TCATTGGGTACCGGCGCAAGCGCGGTACCTTCCGGCAGCTTTTCTACGCC
CAGGCCCTGATGAAGCGGGTGGGGTGCCAGAGCGTGGAAGCCACTGTCCG
ACAGCGGCGTCTGCTGTTTGCCGGGGCCTTGGCAAGGCAGCCGAACGGGC
GACTCCCCAAGCGGCTGATGTTCGGCAAGTTGGCGAGTTGGTAGGGGGGG
AGGACCCGCCCGGAACATAACTAACTGGGAGATGTGCCTGAAGGACGACC
TCAAGGCATTCGAAATCCCCAGCGCCGATTGGGCGACAGCAGCGAAGAAG
GTGGAAGAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig16873:1127..1637+

>mRNA_L-elsbetiae_contig16873.4613.1 ID=mRNA_L-elsbetiae_contig16873.4613.1|Name=mRNA_L-elsbetiae_contig16873.4613.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig16873:1127..1637+ (Laminarionema elsbetiae ELsaHSoW15)
TGCCCGCGTTCAGGCGGTGCACTGTTCTCTAAGACCCAGTTTTTTTGTGG
TACTATAATCATCATCGTTTACACTCAAGATCCGGGTACTTCGTTCGGAG
GCGATGGAGGCACTGTTGTAAGGCTGCATGATCTGGGGGCTCCACGTTGC
AACTACTACAAGCTGCTGATATCGATCCACCACCAACTACTCCAGGCGAG
TCATTGGGTACCGGCGCAAGCGCGGTACCTTCCGGCAGCTTTTCTACGCC
CAGGCCCTGATGAAGCGGGTGGGGTGCCAGAGCGTGGAAGCCACTGTCCG
ACAGCGGCGTCTGCTGTTTGCCGGGGCCTTGGCAAGGCAGCCGAACGGGC
GACTCCCCAAGCGGCTGATGTTCGGCAAGTTGGCGAGTTGGTAGGGGGGG
AGGACCCGCCCGGAACATAATGCCCGCGTTCAGGCGGTGCACTGTTCTCT
AAGACCCAGTTTTTTTGTGGTACTATAATCATCATCGTTTACACTCAAGA
TCCGGGTACTTCGTTCGGAGGCGATGGAGGCACTGTTGTAAGGCTGCATG
ATCTGGGGGCTCCACGTTGCAACTACTACAAGCTGCTGATATCGATCCAC
CACCAACTACTCCAGGCGAGTCATTGGGTACCGGCGCAAGCGCGGTACCT
TCCGGCAGCTTTTCTACGCCCAGGCCCTGATGAAGCGGGTGGGGTGCCAG
AGCGTGGAAGCCACTGTCCGACAGCGGCGTCTGCTGTTTGCCGGGGCCTT
GGCAAGGCAGCCGAACGGGCGACTCCCCAAGCGGCTGATGTTCGGCAAGT
TGGCGAGTTGGTAGGGGGGGAGGACCCGCCCGGAACATAA
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